Wall clock time and date at job start Tue Mar 31 2020 13:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46858 * 2 1 4 4 C 1.50701 * 109.46694 * 180.02562 * 3 2 1 5 5 C 1.33815 * 124.52329 * 90.00535 * 4 3 2 6 6 C 1.37475 * 115.09899 * 179.74626 * 5 4 3 7 7 C 1.36645 * 113.29792 * 0.48562 * 6 5 4 8 8 C 1.46584 * 125.46032 * 179.79887 * 7 6 5 9 9 O 1.21703 * 119.99384 * 7.41140 * 8 7 6 10 10 N 1.34771 * 119.99855 * 187.40621 * 8 7 6 11 11 C 1.46495 * 120.00440 * 5.57992 * 10 8 7 12 12 C 1.46500 * 119.99781 * 185.57854 * 10 8 7 13 13 H 1.09006 * 110.64218 * 1.68715 * 12 10 8 14 14 C 1.55149 * 110.72169 * 125.02476 * 12 10 8 15 15 C 1.55135 * 101.48642 * 82.69734 * 14 12 10 16 16 N 1.47428 * 104.71774 * 37.29798 * 15 14 12 17 17 C 1.36940 * 125.64446 * 155.82116 * 16 15 14 18 18 H 1.08002 * 119.99349 * 191.10050 * 17 16 15 19 19 C 1.38812 * 119.99944 * 11.10230 * 17 16 15 20 20 N 1.31617 * 119.99822 * 205.68532 * 19 17 16 21 21 Si 1.86797 * 120.00197 * 25.69006 * 19 17 16 22 22 H 1.48505 * 109.46976 * 269.99898 * 21 19 17 23 23 H 1.48503 * 109.47204 * 29.99738 * 21 19 17 24 24 H 1.48496 * 109.47060 * 150.00074 * 21 19 17 25 25 C 1.47021 * 108.70521 * 335.55009 * 16 15 14 26 26 S 1.70613 * 124.52134 * 270.01994 * 4 3 2 27 27 H 1.08999 * 109.47100 * 299.99720 * 1 2 3 28 28 H 1.08993 * 109.47675 * 59.99688 * 1 2 3 29 29 H 1.08999 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46389 * 240.00451 * 2 1 3 31 31 H 1.08993 * 109.46976 * 120.00045 * 2 1 3 32 32 H 1.08999 * 109.47036 * 60.00241 * 3 2 1 33 33 H 1.09003 * 109.46914 * 300.00116 * 3 2 1 34 34 H 1.08000 * 122.45144 * 0.03287 * 5 4 3 35 35 H 1.07995 * 123.35026 * 180.29567 * 6 5 4 36 36 H 1.08995 * 109.47549 * 275.43664 * 11 10 8 37 37 H 1.09010 * 109.46926 * 35.43702 * 11 10 8 38 38 H 1.09003 * 109.46959 * 155.43222 * 11 10 8 39 39 H 1.09002 * 111.00743 * 200.93765 * 14 12 10 40 40 H 1.08997 * 111.01038 * 324.75103 * 14 12 10 41 41 H 1.08994 * 110.49706 * 278.45476 * 15 14 12 42 42 H 1.09002 * 110.34618 * 156.05971 * 15 14 12 43 43 H 0.97008 * 120.00018 * 354.94404 * 20 19 17 44 44 H 1.09000 * 109.87969 * 120.70763 * 25 16 15 45 45 H 1.08997 * 109.88510 * 241.87183 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3049 1.4427 -1.1035 6 6 5.6612 1.4482 -0.8789 7 6 5.9894 1.4417 0.4475 8 6 7.3527 1.4411 0.9862 9 8 8.3024 1.5825 0.2384 10 7 7.5543 1.2840 2.3094 11 6 6.4230 0.9921 3.1932 12 6 8.9048 1.4052 2.8641 13 1 9.6212 1.6523 2.0806 14 6 8.9395 2.4630 3.9985 15 6 8.4389 1.6333 5.2100 16 7 9.0320 0.2971 5.0196 17 6 9.2732 -0.6175 6.0099 18 1 9.8711 -1.4927 5.8026 19 6 8.7491 -0.4196 7.2800 20 7 9.3409 -0.9548 8.3267 21 14 7.2040 0.6060 7.5035 22 1 7.5793 2.0284 7.7073 23 1 6.3518 0.4875 6.2932 24 1 6.4528 0.1177 8.6877 25 6 9.3157 0.1065 3.5896 26 16 4.5145 1.4418 1.4047 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8820 1.4435 -2.0972 35 1 6.3942 1.4537 -1.6719 36 1 5.9341 1.9238 3.4775 37 1 5.7106 0.3522 2.6723 38 1 6.7825 0.4828 4.0874 39 1 9.9537 2.8271 4.1624 40 1 8.2603 3.2882 3.7843 41 1 7.3508 1.5695 5.2055 42 1 8.7900 2.0747 6.1427 43 1 10.0995 -1.5471 8.2049 44 1 10.3800 -0.0785 3.4443 45 1 8.7356 -0.7324 3.2052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033117745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:35 Heat of formation + Delta-G solvation = 27.424161 kcal Electronic energy + Delta-G solvation = -25320.603253 eV Core-core repulsion = 21851.743642 eV Total energy + Delta-G solvation = -3468.859611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.15149 -38.44635 -37.49704 -35.12344 -34.66310 -32.41855 -30.67373 -29.59283 -28.69594 -27.20819 -26.40126 -24.18366 -23.54825 -22.06066 -21.74790 -20.75393 -19.49322 -18.55811 -18.06123 -17.49397 -16.39490 -16.13216 -15.56141 -15.28375 -15.17980 -14.82856 -14.38981 -14.08159 -13.63108 -13.49808 -13.36194 -13.14597 -13.08574 -12.79554 -12.59819 -12.46381 -12.05953 -11.94158 -11.84916 -11.72854 -11.53208 -11.29632 -11.24615 -11.07484 -11.00888 -10.88876 -10.47693 -10.08441 -9.82203 -9.65236 -9.30293 -8.86718 -8.66742 -8.52880 -8.39593 -7.13084 -6.36671 -3.23251 0.42497 1.38413 1.84015 2.28847 3.01357 3.22437 3.34709 3.41317 3.59619 4.37095 4.54203 4.54331 4.60810 4.69655 4.95392 4.99667 5.06460 5.12896 5.14232 5.22434 5.23765 5.35002 5.42618 5.42973 5.44543 5.48591 5.58414 5.70183 5.74090 5.83443 5.85338 5.90718 5.92001 5.96079 6.08127 6.21727 6.26318 6.27750 6.50670 6.52258 6.67924 6.81935 7.43291 7.66751 8.16890 8.30571 9.00262 9.54786 10.21355 11.11962 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.003750 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.035919 B = 7464.054372 C = 8779.387252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.221 4.221 5 C -0.156 4.156 6 C -0.054 4.054 7 C -0.268 4.268 8 C 0.588 3.412 9 O -0.537 6.537 10 N -0.592 5.592 11 C 0.048 3.952 12 C 0.128 3.872 13 H 0.109 0.891 14 C -0.140 4.140 15 C 0.095 3.905 16 N -0.607 5.607 17 C -0.329 4.329 18 H 0.076 0.924 19 C -0.020 4.020 20 N -0.920 5.920 21 Si 1.063 2.937 22 H -0.293 1.293 23 H -0.288 1.288 24 H -0.298 1.298 25 C 0.126 3.874 26 S 0.232 5.768 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.263 0.737 44 H 0.042 0.958 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 6.483 -17.259 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.340 4.340 5 C -0.186 4.186 6 C -0.087 4.087 7 C -0.388 4.388 8 C 0.377 3.623 9 O -0.417 6.417 10 N -0.324 5.324 11 C -0.097 4.097 12 C 0.024 3.976 13 H 0.127 0.873 14 C -0.179 4.179 15 C -0.030 4.030 16 N -0.335 5.335 17 C -0.456 4.456 18 H 0.094 0.906 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.895 3.105 22 H -0.221 1.221 23 H -0.215 1.215 24 H -0.226 1.226 25 C 0.000 4.000 26 S 0.502 5.498 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.167 0.833 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.721 7.097 -14.883 23.483 hybrid contribution 1.171 -0.730 -2.765 3.090 sum -15.550 6.367 -17.648 24.368 Atomic orbital electron populations 1.21780 0.95355 1.01971 1.01901 1.21567 0.95900 0.95607 1.02840 1.20219 0.87473 0.97956 1.03286 1.24856 1.01580 1.07204 1.00380 1.19872 0.92531 1.06833 0.99371 1.20675 0.96119 0.96838 0.95084 1.24588 0.96877 1.19300 0.98072 1.17022 0.86821 0.76652 0.81853 1.90792 1.42152 1.51112 1.57637 1.47637 1.09027 1.69495 1.06192 1.22391 0.88501 1.01593 0.97205 1.22193 0.82414 0.96896 0.96059 0.87309 1.23131 1.02305 0.96930 0.95515 1.22291 0.96674 0.86746 0.97261 1.44854 1.74078 1.12720 1.01848 1.20019 1.30542 1.04827 0.90193 0.90643 1.25836 1.02983 1.02621 0.90633 1.70895 1.23419 1.32313 1.29410 0.83874 0.76861 0.75249 0.74471 1.22114 1.21490 1.22610 1.21682 0.98583 0.94225 0.85556 1.83802 0.93263 1.67166 1.05596 0.92554 0.92664 0.92438 0.91562 0.91564 0.90708 0.90177 0.84529 0.83272 0.91874 0.91054 0.86266 0.89778 0.91148 0.94666 0.91990 0.92619 0.94056 0.94862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 3 C -0.05 -0.37 5.65 -27.88 -0.16 -0.53 16 4 C -0.22 -2.15 5.53 -35.86 -0.20 -2.35 16 5 C -0.16 -1.57 9.99 -41.41 -0.41 -1.99 16 6 C -0.05 -0.65 10.02 -40.43 -0.41 -1.06 16 7 C -0.27 -3.68 6.19 -36.79 -0.23 -3.91 16 8 C 0.59 9.71 7.63 -12.90 -0.10 9.61 16 9 O -0.54 -10.24 16.24 5.19 0.08 -10.16 16 10 N -0.59 -9.66 2.82 -173.41 -0.49 -10.15 16 11 C 0.05 0.72 7.06 59.84 0.42 1.14 16 12 C 0.13 2.21 3.58 -66.10 -0.24 1.98 16 13 H 0.11 1.87 7.01 -51.93 -0.36 1.51 16 14 C -0.14 -2.34 6.54 -24.46 -0.16 -2.50 16 15 C 0.10 1.95 3.81 -2.40 -0.01 1.94 16 16 N -0.61 -14.28 2.86 -169.93 -0.49 -14.76 16 17 C -0.33 -9.14 10.44 -15.06 -0.16 -9.29 16 18 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 19 C -0.02 -0.58 5.41 -17.43 -0.09 -0.67 16 20 N -0.92 -28.27 13.70 55.49 0.76 -27.51 16 21 Si 1.06 25.37 24.69 -169.99 -4.20 21.17 16 22 H -0.29 -6.65 6.57 56.52 0.37 -6.28 16 23 H -0.29 -6.17 5.82 56.52 0.33 -5.84 16 24 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 25 C 0.13 2.56 6.29 -3.06 -0.02 2.54 16 26 S 0.23 2.56 17.86 -107.50 -1.92 0.64 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 37 H 0.07 0.96 5.07 -27.16 -0.14 0.82 16 38 H 0.12 2.14 4.35 -51.93 -0.23 1.92 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.71 3.11 -51.93 -0.16 0.55 16 42 H 0.06 1.38 6.10 -51.93 -0.32 1.06 16 43 H 0.26 8.05 8.73 -40.82 -0.36 7.69 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.70 8.04 -51.93 -0.42 0.28 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -31.83 357.20 -9.18 -41.00 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.77 Total: 1.01 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.54 Total: -6.62 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.22 Total: -52.42 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.20 Total: 21.17 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.92 Total: 0.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.83 -9.18 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033117745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.426 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds