Wall clock time and date at job start Tue Mar 31 2020 13:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46858 * 2 1 4 4 C 1.50701 * 109.46694 * 180.02562 * 3 2 1 5 5 C 1.33815 * 124.52329 * 90.00535 * 4 3 2 6 6 C 1.37475 * 115.09899 * 179.74626 * 5 4 3 7 7 C 1.36645 * 113.29792 * 0.48562 * 6 5 4 8 8 C 1.46584 * 125.46032 * 179.79887 * 7 6 5 9 9 O 1.21703 * 119.99384 * 7.41140 * 8 7 6 10 10 N 1.34771 * 119.99855 * 187.40621 * 8 7 6 11 11 C 1.46495 * 120.00440 * 5.57992 * 10 8 7 12 12 C 1.46500 * 119.99781 * 185.57854 * 10 8 7 13 13 H 1.09006 * 110.64218 * 1.68715 * 12 10 8 14 14 C 1.55149 * 110.72169 * 125.02476 * 12 10 8 15 15 C 1.55135 * 101.48642 * 82.69734 * 14 12 10 16 16 N 1.47428 * 104.71774 * 37.29798 * 15 14 12 17 17 C 1.36940 * 125.64446 * 155.82116 * 16 15 14 18 18 H 1.08002 * 119.99349 * 191.10050 * 17 16 15 19 19 C 1.38812 * 119.99944 * 11.10230 * 17 16 15 20 20 N 1.31617 * 119.99822 * 205.68532 * 19 17 16 21 21 Si 1.86797 * 120.00197 * 25.69006 * 19 17 16 22 22 H 1.48505 * 109.46976 * 269.99898 * 21 19 17 23 23 H 1.48503 * 109.47204 * 29.99738 * 21 19 17 24 24 H 1.48496 * 109.47060 * 150.00074 * 21 19 17 25 25 C 1.47021 * 108.70521 * 335.55009 * 16 15 14 26 26 S 1.70613 * 124.52134 * 270.01994 * 4 3 2 27 27 H 1.08999 * 109.47100 * 299.99720 * 1 2 3 28 28 H 1.08993 * 109.47675 * 59.99688 * 1 2 3 29 29 H 1.08999 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46389 * 240.00451 * 2 1 3 31 31 H 1.08993 * 109.46976 * 120.00045 * 2 1 3 32 32 H 1.08999 * 109.47036 * 60.00241 * 3 2 1 33 33 H 1.09003 * 109.46914 * 300.00116 * 3 2 1 34 34 H 1.08000 * 122.45144 * 0.03287 * 5 4 3 35 35 H 1.07995 * 123.35026 * 180.29567 * 6 5 4 36 36 H 1.08995 * 109.47549 * 275.43664 * 11 10 8 37 37 H 1.09010 * 109.46926 * 35.43702 * 11 10 8 38 38 H 1.09003 * 109.46959 * 155.43222 * 11 10 8 39 39 H 1.09002 * 111.00743 * 200.93765 * 14 12 10 40 40 H 1.08997 * 111.01038 * 324.75103 * 14 12 10 41 41 H 1.08994 * 110.49706 * 278.45476 * 15 14 12 42 42 H 1.09002 * 110.34618 * 156.05971 * 15 14 12 43 43 H 0.97008 * 120.00018 * 354.94404 * 20 19 17 44 44 H 1.09000 * 109.87969 * 120.70763 * 25 16 15 45 45 H 1.08997 * 109.88510 * 241.87183 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3049 1.4427 -1.1035 6 6 5.6612 1.4482 -0.8789 7 6 5.9894 1.4417 0.4475 8 6 7.3527 1.4411 0.9862 9 8 8.3024 1.5825 0.2384 10 7 7.5543 1.2840 2.3094 11 6 6.4230 0.9921 3.1932 12 6 8.9048 1.4052 2.8641 13 1 9.6212 1.6523 2.0806 14 6 8.9395 2.4630 3.9985 15 6 8.4389 1.6333 5.2100 16 7 9.0320 0.2971 5.0196 17 6 9.2732 -0.6175 6.0099 18 1 9.8711 -1.4927 5.8026 19 6 8.7491 -0.4196 7.2800 20 7 9.3409 -0.9548 8.3267 21 14 7.2040 0.6060 7.5035 22 1 7.5793 2.0284 7.7073 23 1 6.3518 0.4875 6.2932 24 1 6.4528 0.1177 8.6877 25 6 9.3157 0.1065 3.5896 26 16 4.5145 1.4418 1.4047 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8820 1.4435 -2.0972 35 1 6.3942 1.4537 -1.6719 36 1 5.9341 1.9238 3.4775 37 1 5.7106 0.3522 2.6723 38 1 6.7825 0.4828 4.0874 39 1 9.9537 2.8271 4.1624 40 1 8.2603 3.2882 3.7843 41 1 7.3508 1.5695 5.2055 42 1 8.7900 2.0747 6.1427 43 1 10.0995 -1.5471 8.2049 44 1 10.3800 -0.0785 3.4443 45 1 8.7356 -0.7324 3.2052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033117745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:34 Heat of formation + Delta-G solvation = 8.358979 kcal Electronic energy + Delta-G solvation = -25321.429981 eV Core-core repulsion = 21851.743642 eV Total energy + Delta-G solvation = -3469.686339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46361 -39.58424 -38.68592 -36.17896 -35.75991 -34.35441 -31.86804 -30.94842 -30.17284 -28.20915 -27.63509 -25.68006 -24.67103 -23.22227 -22.47472 -22.31905 -20.85295 -19.60227 -19.48330 -19.20342 -17.72516 -17.14594 -16.85432 -16.61855 -16.22085 -15.88603 -15.64298 -15.40362 -15.04493 -14.71823 -14.51263 -14.28100 -14.11486 -14.00690 -13.69730 -13.53733 -13.32944 -13.24807 -13.05299 -12.84376 -12.68992 -12.57661 -12.47006 -12.31343 -12.05831 -11.78922 -11.63478 -11.55690 -11.37312 -11.25063 -11.03933 -10.63598 -10.00251 -9.57559 -9.40322 -9.14593 -8.63655 -5.43236 -0.49752 0.49400 0.98881 1.36840 1.42392 1.54928 1.71988 1.78422 2.10978 2.56591 3.04653 3.31015 3.45018 3.66396 3.72713 3.79595 3.96522 4.08252 4.14544 4.18089 4.31621 4.32133 4.38230 4.42030 4.44791 4.63739 4.65001 4.73911 4.74469 4.85475 4.86174 4.92582 4.94393 4.97468 5.05023 5.12399 5.18045 5.23987 5.31113 5.43510 5.45017 5.48479 5.57127 6.09920 6.20199 6.82790 6.92960 7.46153 8.12103 8.85596 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.003750 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.035919 B = 7464.054372 C = 8779.387252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.205 4.205 5 C -0.163 4.163 6 C -0.048 4.048 7 C -0.307 4.307 8 C 0.588 3.412 9 O -0.573 6.573 10 N -0.594 5.594 11 C 0.047 3.953 12 C 0.139 3.861 13 H 0.111 0.889 14 C -0.125 4.125 15 C 0.089 3.911 16 N -0.621 5.621 17 C -0.320 4.320 18 H 0.037 0.963 19 C -0.076 4.076 20 N -0.956 5.956 21 Si 1.100 2.900 22 H -0.271 1.271 23 H -0.249 1.249 24 H -0.308 1.308 25 C 0.127 3.873 26 S 0.250 5.750 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.247 0.753 44 H 0.033 0.967 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.300 8.680 -19.075 28.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.325 4.325 5 C -0.192 4.192 6 C -0.083 4.083 7 C -0.427 4.427 8 C 0.378 3.622 9 O -0.455 6.455 10 N -0.325 5.325 11 C -0.097 4.097 12 C 0.035 3.965 13 H 0.129 0.871 14 C -0.164 4.164 15 C -0.035 4.035 16 N -0.350 5.350 17 C -0.448 4.448 18 H 0.055 0.945 19 C -0.269 4.269 20 N -0.599 5.599 21 Si 0.925 3.075 22 H -0.197 1.197 23 H -0.174 1.174 24 H -0.236 1.236 25 C 0.001 3.999 26 S 0.521 5.479 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.179 0.821 35 H 0.165 0.835 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -20.117 9.307 -16.737 27.775 hybrid contribution 2.215 -1.510 -2.326 3.549 sum -17.902 7.797 -19.063 27.289 Atomic orbital electron populations 1.21766 0.94353 1.02228 1.02500 1.21555 0.96766 0.95212 1.02325 1.20355 0.85550 0.98412 1.04658 1.25187 1.02787 1.04949 0.99550 1.20056 0.91546 1.06857 1.00734 1.20875 0.97223 0.95547 0.94614 1.24409 0.96567 1.22536 0.99173 1.17366 0.87706 0.75671 0.81414 1.90762 1.43625 1.52855 1.58298 1.47641 1.08753 1.69580 1.06524 1.22439 0.88326 1.02907 0.96012 1.21958 0.83472 0.95093 0.95968 0.87067 1.23089 1.03474 0.96879 0.92952 1.22469 0.97397 0.85356 0.98256 1.44832 1.74359 1.13454 1.02312 1.19856 1.28951 1.04434 0.91547 0.94463 1.27213 1.05271 1.04074 0.90370 1.71036 1.24064 1.34181 1.30656 0.83479 0.73467 0.74977 0.75592 1.19670 1.17406 1.23633 1.21714 0.97969 0.95930 0.84324 1.83557 0.91839 1.66841 1.05712 0.92215 0.91822 0.92424 0.91802 0.92446 0.89717 0.88468 0.82145 0.83497 0.89367 0.89654 0.89014 0.89005 0.88067 0.92956 0.93495 0.94407 0.94883 0.95830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.32 5.92 30.60 0.18 -1.14 16 3 C -0.05 -0.55 5.65 29.85 0.17 -0.38 16 4 C -0.21 -3.28 5.53 24.68 0.14 -3.14 16 5 C -0.16 -2.77 9.99 21.08 0.21 -2.56 16 6 C -0.05 -1.08 10.02 21.72 0.22 -0.86 16 7 C -0.31 -7.84 6.19 24.08 0.15 -7.70 16 8 C 0.59 18.68 7.63 86.42 0.66 19.34 16 9 O -0.57 -21.62 16.24 -4.36 -0.07 -21.69 16 10 N -0.59 -18.34 2.82 -820.78 -2.32 -20.65 16 11 C 0.05 1.29 7.06 127.77 0.90 2.19 16 12 C 0.14 4.64 3.58 46.18 0.17 4.80 16 13 H 0.11 3.72 7.01 -2.38 -0.02 3.71 16 14 C -0.13 -3.86 6.54 32.06 0.21 -3.65 16 15 C 0.09 3.47 3.81 86.93 0.33 3.80 16 16 N -0.62 -29.26 2.86 -691.53 -1.98 -31.24 16 17 C -0.32 -18.32 10.44 84.03 0.88 -17.44 16 18 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 19 C -0.08 -4.41 5.41 84.86 0.46 -3.95 16 20 N -0.96 -60.89 13.70 21.65 0.30 -60.59 16 21 Si 1.10 50.23 24.69 68.60 1.69 51.93 16 22 H -0.27 -11.34 6.57 99.48 0.65 -10.69 16 23 H -0.25 -9.71 5.82 99.48 0.58 -9.13 16 24 H -0.31 -14.50 7.11 99.48 0.71 -13.80 16 25 C 0.13 5.18 6.29 86.73 0.55 5.72 16 26 S 0.25 4.75 17.86 -56.49 -1.01 3.74 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.09 1.96 7.53 -2.39 -0.02 1.94 16 37 H 0.09 2.08 5.07 -18.13 -0.09 1.99 16 38 H 0.09 3.08 4.35 -2.39 -0.01 3.07 16 39 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 40 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.05 1.91 3.11 -2.39 -0.01 1.90 16 42 H 0.05 1.99 6.10 -2.39 -0.01 1.97 16 43 H 0.25 15.92 8.73 -92.70 -0.81 15.11 16 44 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.02 1.01 8.04 -2.39 -0.02 0.99 16 Total: -1.00 -71.74 357.20 3.23 -68.51 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.69 Total: 15.53 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.93 Total: -5.53 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.00 Total: -112.49 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.07 Total: -21.69 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 1.69 Total: 51.93 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.01 Total: 3.74 kcal Total: -71.74 3.23 -68.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033117745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.870 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds