Wall clock time and date at job start Tue Mar 31 2020 13:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00469 * 2 1 4 4 O 1.21285 * 119.99450 * 4.85327 * 3 2 1 5 5 C 1.50693 * 120.00232 * 184.84543 * 3 2 1 6 6 C 1.53008 * 109.47369 * 295.88357 * 5 3 2 7 7 C 1.53003 * 109.47145 * 55.88096 * 5 3 2 8 8 C 1.50700 * 109.47127 * 175.88419 * 5 3 2 9 9 C 1.33391 * 125.20307 * 179.72004 * 8 5 3 10 10 C 1.38419 * 114.92256 * 179.85740 * 9 8 5 11 11 C 1.33393 * 114.91989 * 0.43200 * 10 9 8 12 12 S 1.75879 * 125.20376 * 0.02562 * 8 5 3 13 13 C 1.46508 * 119.99710 * 180.02562 * 2 1 3 14 14 H 1.08996 * 110.91537 * 175.25590 * 13 2 1 15 15 C 1.55153 * 111.00172 * 299.16143 * 13 2 1 16 16 C 1.54327 * 103.10067 * 153.66613 * 15 13 2 17 17 N 1.47029 * 107.26936 * 337.71836 * 16 15 13 18 18 C 1.36933 * 125.64537 * 178.90485 * 17 16 15 19 19 H 1.08005 * 119.99787 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00418 * 0.02732 * 18 17 16 21 21 N 1.31626 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00345 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46668 * 59.99653 * 22 20 18 24 24 H 1.48500 * 109.47114 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46969 * 299.99925 * 22 20 18 26 26 C 1.47421 * 108.70144 * 358.93977 * 17 16 15 27 27 H 1.09006 * 109.46456 * 275.06883 * 1 2 3 28 28 H 1.08996 * 109.46846 * 35.06510 * 1 2 3 29 29 H 1.08997 * 109.47726 * 155.07253 * 1 2 3 30 30 H 1.08995 * 109.46853 * 63.18000 * 6 5 3 31 31 H 1.08997 * 109.47001 * 183.18233 * 6 5 3 32 32 H 1.09004 * 109.46837 * 303.18413 * 6 5 3 33 33 H 1.09002 * 109.47034 * 76.76879 * 7 5 3 34 34 H 1.08996 * 109.47016 * 196.76773 * 7 5 3 35 35 H 1.09001 * 109.47022 * 316.76845 * 7 5 3 36 36 H 1.08006 * 122.53688 * 0.02562 * 9 8 5 37 37 H 1.07997 * 122.54636 * 180.20015 * 10 9 8 38 38 H 1.08001 * 125.20255 * 179.79188 * 11 10 9 39 39 H 1.08996 * 110.72177 * 35.21199 * 15 13 2 40 40 H 1.09001 * 110.72099 * 272.11142 * 15 13 2 41 41 H 1.09003 * 109.88479 * 97.13275 * 16 15 13 42 42 H 1.08995 * 109.88509 * 218.14351 * 16 15 13 43 43 H 0.96994 * 120.00405 * 180.02562 * 21 20 18 44 44 H 1.09006 * 110.36540 * 142.97153 * 26 17 16 45 45 H 1.09006 * 110.36559 * 265.28969 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5358 2.2156 0.0889 5 6 3.6419 1.1694 -0.1102 6 6 4.2445 0.4862 1.1191 7 6 4.0619 0.4122 -1.3717 8 6 4.1376 2.5904 -0.1887 9 6 5.4172 2.9540 -0.2880 10 6 5.6324 4.3200 -0.3486 11 6 4.5282 5.0661 -0.2895 12 16 3.1182 4.0232 -0.1559 13 6 2.1975 -1.2688 -0.0006 14 1 3.2707 -1.0985 -0.0847 15 6 1.8642 -2.1038 1.2639 16 6 2.1173 -3.5544 0.8019 17 7 2.0182 -3.5689 -0.6649 18 6 2.1997 -4.6644 -1.4662 19 1 2.1052 -4.5710 -2.5381 20 6 2.5050 -5.8949 -0.9010 21 7 2.6206 -6.0086 0.4052 22 14 2.7518 -7.3895 -1.9941 23 1 3.8751 -7.1367 -2.9319 24 1 3.0666 -8.5717 -1.1525 25 1 1.5104 -7.6478 -2.7670 26 6 1.6920 -2.2086 -1.1301 27 1 -0.3632 0.0908 1.0237 28 1 -0.3633 0.8411 -0.5904 29 1 -0.3634 -0.9319 -0.4331 30 1 3.9311 -0.5574 1.1448 31 1 5.3320 0.5379 1.0668 32 1 3.8996 0.9915 2.0212 33 1 3.8959 1.0421 -2.2457 34 1 5.1187 0.1539 -1.3054 35 1 3.4702 -0.4987 -1.4626 36 1 6.2240 2.2367 -0.3213 37 1 6.6197 4.7495 -0.4334 38 1 4.5038 6.1454 -0.3196 39 1 0.8221 -1.9673 1.5526 40 1 2.5287 -1.8397 2.0866 41 1 3.1134 -3.8730 1.1093 42 1 1.3670 -4.2171 1.2331 43 1 2.8343 -6.8684 0.8001 44 1 2.2113 -1.9922 -2.0638 45 1 0.6152 -2.1001 -1.2600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033324665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:42 Heat of formation + Delta-G solvation = 53.516053 kcal Electronic energy + Delta-G solvation = -26239.431561 eV Core-core repulsion = 22771.703380 eV Total energy + Delta-G solvation = -3467.728181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82594 -37.96872 -37.62910 -35.12984 -34.63083 -32.07229 -29.40315 -28.81145 -27.74267 -27.14521 -26.88717 -24.87308 -24.27506 -22.37266 -20.73768 -20.25538 -19.43902 -18.67788 -17.31829 -16.88417 -16.51460 -15.48797 -15.37061 -15.23304 -14.73750 -14.62856 -14.04249 -13.81598 -13.72986 -13.20361 -13.10091 -12.69555 -12.59391 -12.50409 -12.38699 -12.30214 -12.06133 -11.95662 -11.78442 -11.40621 -11.30736 -11.05898 -11.00691 -10.95755 -10.83426 -10.55009 -10.36148 -10.18957 -9.84957 -9.80693 -9.26481 -8.72721 -8.56731 -8.49041 -8.16145 -6.95668 -5.81185 -3.16241 1.15501 1.89403 2.34359 2.55170 2.86432 3.08868 3.35174 3.40126 3.40899 4.30300 4.42212 4.49988 4.94103 4.94595 5.11268 5.12892 5.17599 5.40478 5.43489 5.48088 5.51167 5.52063 5.57449 5.64009 5.67334 5.70705 5.74633 5.84434 5.89657 6.03054 6.10507 6.10696 6.17058 6.24094 6.33069 6.41302 6.45408 6.56504 6.61523 6.65600 7.43169 7.45847 7.47310 7.71574 8.08714 8.14275 9.10683 9.70453 10.34146 11.30041 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.003323 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.263202 B = 8424.724955 C = 8920.191994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.588 5.588 3 C 0.522 3.478 4 O -0.532 6.532 5 C -0.008 4.008 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.179 4.179 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.277 4.277 12 S 0.220 5.780 13 C 0.089 3.911 14 H 0.126 0.874 15 C -0.155 4.155 16 C 0.179 3.821 17 N -0.601 5.601 18 C -0.233 4.233 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.128 3.872 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.254 0.746 44 H 0.044 0.956 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 16.592 0.621 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.318 5.318 3 C 0.310 3.690 4 O -0.412 6.412 5 C -0.013 4.013 6 C -0.209 4.209 7 C -0.217 4.217 8 C -0.297 4.297 9 C -0.169 4.169 10 C -0.174 4.174 11 C -0.413 4.413 12 S 0.485 5.515 13 C -0.015 4.015 14 H 0.143 0.857 15 C -0.194 4.194 16 C 0.054 3.946 17 N -0.328 5.328 18 C -0.361 4.361 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.000 4.000 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.764 17.174 0.810 17.210 hybrid contribution 1.769 -1.091 -0.573 2.156 sum 2.533 16.083 0.237 16.283 Atomic orbital electron populations 1.21703 0.79089 1.03337 1.01934 1.47678 1.07086 1.05678 1.71321 1.20467 0.89508 0.83441 0.75633 1.90385 1.68823 1.30406 1.51573 1.19153 0.91674 0.91434 0.99029 1.22287 1.01756 1.01481 0.95400 1.22369 1.03312 1.00970 0.95007 1.24209 0.97493 0.97482 1.10533 1.19880 0.95706 0.96019 1.05265 1.19956 0.99094 0.92990 1.05403 1.26625 1.00648 1.04400 1.09615 1.85418 1.04104 0.92782 1.69166 1.23381 0.97834 0.81958 0.98297 0.85668 1.23307 1.01160 0.98694 0.96282 1.21168 1.01159 0.88761 0.83556 1.44354 1.83031 1.03085 1.02332 1.18990 1.41719 0.85881 0.89538 0.90365 1.24802 1.01583 0.97689 0.95999 1.69932 1.54311 1.24003 1.08510 0.86190 0.78059 0.82209 0.79227 1.21060 1.21554 1.21122 1.21919 0.97552 0.85997 0.94502 0.92729 0.91088 0.89924 0.89588 0.90840 0.91852 0.91711 0.90742 0.89220 0.84936 0.85627 0.83128 0.91827 0.91730 0.93147 0.93553 0.93556 0.93788 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 9.29 59.85 0.56 1.64 16 2 N -0.59 -8.50 2.90 -171.19 -0.50 -9.00 16 3 C 0.52 7.77 6.46 -10.99 -0.07 7.70 16 4 O -0.53 -8.82 12.58 5.55 0.07 -8.75 16 5 C -0.01 -0.10 0.64 -156.81 -0.10 -0.20 16 6 C -0.15 -1.81 7.99 37.16 0.30 -1.51 16 7 C -0.16 -1.96 7.86 37.16 0.29 -1.67 16 8 C -0.18 -2.38 5.04 -36.00 -0.18 -2.56 16 9 C -0.14 -1.65 9.39 -41.21 -0.39 -2.04 16 10 C -0.14 -1.66 10.18 -41.21 -0.42 -2.07 16 11 C -0.28 -3.26 11.23 29.04 0.33 -2.93 16 12 S 0.22 2.99 19.59 -107.50 -2.11 0.88 16 13 C 0.09 1.38 1.32 -65.52 -0.09 1.29 16 14 H 0.13 1.87 2.73 -51.93 -0.14 1.72 16 15 C -0.16 -2.60 6.33 -24.90 -0.16 -2.76 16 16 C 0.18 3.95 5.37 -3.06 -0.02 3.94 16 17 N -0.60 -14.07 3.40 -169.76 -0.58 -14.65 16 18 C -0.23 -6.10 10.28 -15.06 -0.15 -6.26 16 19 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 20 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 21 N -0.92 -25.62 10.31 55.49 0.57 -25.05 16 22 Si 0.91 21.15 29.55 -169.99 -5.02 16.12 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.13 2.37 6.56 -2.27 -0.01 2.35 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.92 7.65 -51.93 -0.40 0.52 16 29 H 0.08 1.09 5.91 -51.93 -0.31 0.78 16 30 H 0.09 1.08 4.08 -51.93 -0.21 0.87 16 31 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.80 8.02 -51.93 -0.42 0.38 16 34 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 35 H 0.09 1.21 3.73 -51.93 -0.19 1.02 16 36 H 0.13 1.37 7.97 -52.48 -0.42 0.95 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.06 1.03 7.37 -51.93 -0.38 0.65 16 40 H 0.06 0.98 7.47 -51.93 -0.39 0.59 16 41 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 42 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.04 0.80 7.35 -51.93 -0.38 0.42 16 45 H 0.03 0.49 5.93 -51.93 -0.31 0.19 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -29.19 350.51 -8.87 -38.06 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.38 Total: 2.39 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.21 Total: -5.30 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.50 Total: -48.69 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.07 Total: -8.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.11 Total: 0.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.19 -8.87 -38.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033324665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.577 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds