Wall clock time and date at job start Tue Mar 31 2020 13:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00469 * 2 1 4 4 O 1.21285 * 119.99450 * 4.85327 * 3 2 1 5 5 C 1.50693 * 120.00232 * 184.84543 * 3 2 1 6 6 C 1.53008 * 109.47369 * 295.88357 * 5 3 2 7 7 C 1.53003 * 109.47145 * 55.88096 * 5 3 2 8 8 C 1.50700 * 109.47127 * 175.88419 * 5 3 2 9 9 C 1.33391 * 125.20307 * 179.72004 * 8 5 3 10 10 C 1.38419 * 114.92256 * 179.85740 * 9 8 5 11 11 C 1.33393 * 114.91989 * 0.43200 * 10 9 8 12 12 S 1.75879 * 125.20376 * 0.02562 * 8 5 3 13 13 C 1.46508 * 119.99710 * 180.02562 * 2 1 3 14 14 H 1.08996 * 110.91537 * 175.25590 * 13 2 1 15 15 C 1.55153 * 111.00172 * 299.16143 * 13 2 1 16 16 C 1.54327 * 103.10067 * 153.66613 * 15 13 2 17 17 N 1.47029 * 107.26936 * 337.71836 * 16 15 13 18 18 C 1.36933 * 125.64537 * 178.90485 * 17 16 15 19 19 H 1.08005 * 119.99787 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00418 * 0.02732 * 18 17 16 21 21 N 1.31626 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00345 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46668 * 59.99653 * 22 20 18 24 24 H 1.48500 * 109.47114 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46969 * 299.99925 * 22 20 18 26 26 C 1.47421 * 108.70144 * 358.93977 * 17 16 15 27 27 H 1.09006 * 109.46456 * 275.06883 * 1 2 3 28 28 H 1.08996 * 109.46846 * 35.06510 * 1 2 3 29 29 H 1.08997 * 109.47726 * 155.07253 * 1 2 3 30 30 H 1.08995 * 109.46853 * 63.18000 * 6 5 3 31 31 H 1.08997 * 109.47001 * 183.18233 * 6 5 3 32 32 H 1.09004 * 109.46837 * 303.18413 * 6 5 3 33 33 H 1.09002 * 109.47034 * 76.76879 * 7 5 3 34 34 H 1.08996 * 109.47016 * 196.76773 * 7 5 3 35 35 H 1.09001 * 109.47022 * 316.76845 * 7 5 3 36 36 H 1.08006 * 122.53688 * 0.02562 * 9 8 5 37 37 H 1.07997 * 122.54636 * 180.20015 * 10 9 8 38 38 H 1.08001 * 125.20255 * 179.79188 * 11 10 9 39 39 H 1.08996 * 110.72177 * 35.21199 * 15 13 2 40 40 H 1.09001 * 110.72099 * 272.11142 * 15 13 2 41 41 H 1.09003 * 109.88479 * 97.13275 * 16 15 13 42 42 H 1.08995 * 109.88509 * 218.14351 * 16 15 13 43 43 H 0.96994 * 120.00405 * 180.02562 * 21 20 18 44 44 H 1.09006 * 110.36540 * 142.97153 * 26 17 16 45 45 H 1.09006 * 110.36559 * 265.28969 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5358 2.2156 0.0889 5 6 3.6419 1.1694 -0.1102 6 6 4.2445 0.4862 1.1191 7 6 4.0619 0.4122 -1.3717 8 6 4.1376 2.5904 -0.1887 9 6 5.4172 2.9540 -0.2880 10 6 5.6324 4.3200 -0.3486 11 6 4.5282 5.0661 -0.2895 12 16 3.1182 4.0232 -0.1559 13 6 2.1975 -1.2688 -0.0006 14 1 3.2707 -1.0985 -0.0847 15 6 1.8642 -2.1038 1.2639 16 6 2.1173 -3.5544 0.8019 17 7 2.0182 -3.5689 -0.6649 18 6 2.1997 -4.6644 -1.4662 19 1 2.1052 -4.5710 -2.5381 20 6 2.5050 -5.8949 -0.9010 21 7 2.6206 -6.0086 0.4052 22 14 2.7518 -7.3895 -1.9941 23 1 3.8751 -7.1367 -2.9319 24 1 3.0666 -8.5717 -1.1525 25 1 1.5104 -7.6478 -2.7670 26 6 1.6920 -2.2086 -1.1301 27 1 -0.3632 0.0908 1.0237 28 1 -0.3633 0.8411 -0.5904 29 1 -0.3634 -0.9319 -0.4331 30 1 3.9311 -0.5574 1.1448 31 1 5.3320 0.5379 1.0668 32 1 3.8996 0.9915 2.0212 33 1 3.8959 1.0421 -2.2457 34 1 5.1187 0.1539 -1.3054 35 1 3.4702 -0.4987 -1.4626 36 1 6.2240 2.2367 -0.3213 37 1 6.6197 4.7495 -0.4334 38 1 4.5038 6.1454 -0.3196 39 1 0.8221 -1.9673 1.5526 40 1 2.5287 -1.8397 2.0866 41 1 3.1134 -3.8730 1.1093 42 1 1.3670 -4.2171 1.2331 43 1 2.8343 -6.8684 0.8001 44 1 2.2113 -1.9922 -2.0638 45 1 0.6152 -2.1001 -1.2600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033324665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:41 Heat of formation + Delta-G solvation = 38.173185 kcal Electronic energy + Delta-G solvation = -26240.096878 eV Core-core repulsion = 22771.703380 eV Total energy + Delta-G solvation = -3468.393498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98532 -39.27700 -38.74104 -36.44036 -35.79924 -33.87294 -31.08318 -29.82463 -29.10653 -28.24787 -27.99937 -26.49230 -25.45699 -23.45022 -22.06568 -21.95963 -20.58908 -19.61116 -18.99062 -18.13182 -17.69586 -16.79330 -16.52599 -16.45884 -16.26446 -15.93979 -15.50242 -14.91029 -14.88703 -14.52655 -14.42168 -14.05837 -13.83293 -13.63525 -13.62470 -13.33084 -13.26899 -13.02997 -12.91315 -12.87164 -12.72223 -12.46721 -12.35187 -12.25081 -12.12396 -12.02767 -11.96252 -11.73256 -11.66837 -11.13910 -10.67346 -10.37596 -9.78564 -9.44938 -9.17276 -8.86724 -7.82430 -5.18305 0.22632 0.93398 1.35479 1.42691 1.50544 1.52135 1.58371 1.95656 1.97149 2.52632 3.21589 3.36487 3.48276 3.68691 3.84354 3.87194 3.97575 3.99403 4.10659 4.33943 4.35410 4.55587 4.59887 4.60546 4.62570 4.64619 4.75054 4.76682 4.79826 4.82592 4.89769 4.92679 4.98683 5.07454 5.22714 5.26228 5.33612 5.40556 5.49324 5.51692 5.65482 5.72804 5.78772 6.19695 6.27993 6.94411 7.12370 7.78250 8.41045 9.27076 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.003323 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.263202 B = 8424.724955 C = 8920.191994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.587 5.587 3 C 0.518 3.482 4 O -0.548 6.548 5 C -0.005 4.005 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.192 4.192 9 C -0.132 4.132 10 C -0.149 4.149 11 C -0.271 4.271 12 S 0.167 5.833 13 C 0.111 3.889 14 H 0.138 0.862 15 C -0.141 4.141 16 C 0.188 3.812 17 N -0.620 5.620 18 C -0.242 4.242 19 H 0.083 0.917 20 C -0.059 4.059 21 N -0.948 5.948 22 Si 0.974 3.026 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.280 1.280 26 C 0.124 3.876 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.021 0.979 42 H 0.009 0.991 43 H 0.247 0.753 44 H 0.050 0.950 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 17.974 0.045 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.317 5.317 3 C 0.307 3.693 4 O -0.429 6.429 5 C -0.010 4.010 6 C -0.206 4.206 7 C -0.213 4.213 8 C -0.310 4.310 9 C -0.163 4.163 10 C -0.179 4.179 11 C -0.406 4.406 12 S 0.432 5.568 13 C 0.007 3.993 14 H 0.155 0.845 15 C -0.180 4.180 16 C 0.063 3.937 17 N -0.347 5.347 18 C -0.371 4.371 19 H 0.101 0.899 20 C -0.253 4.253 21 N -0.596 5.596 22 Si 0.803 3.197 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.206 1.206 26 C -0.002 4.002 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.188 0.812 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.040 0.960 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.057 18.594 0.214 18.709 hybrid contribution 1.357 -1.414 -0.427 2.006 sum 3.414 17.180 -0.213 17.517 Atomic orbital electron populations 1.21762 0.78501 1.03384 1.02514 1.47652 1.07473 1.05157 1.71395 1.20846 0.90421 0.83011 0.75061 1.90408 1.69564 1.30898 1.52056 1.19159 0.90289 0.91794 0.99726 1.22275 1.02926 1.00672 0.94735 1.22338 1.04172 1.00104 0.94660 1.24241 0.97759 0.97021 1.11985 1.20179 0.95637 0.96778 1.03739 1.20289 1.00123 0.92843 1.04632 1.26787 0.99507 1.05213 1.09114 1.85553 1.06254 0.94491 1.70485 1.23091 0.98429 0.81762 0.95972 0.84496 1.23140 1.02246 0.95221 0.97381 1.20885 0.98264 0.91417 0.83146 1.44582 1.82914 1.04397 1.02810 1.19370 1.40525 0.86957 0.90237 0.89886 1.25561 1.02270 1.00286 0.97169 1.70141 1.55661 1.23921 1.09915 0.85224 0.78132 0.78791 0.77601 1.20159 1.22293 1.20649 1.22060 0.97893 0.84435 0.95797 0.91950 0.90851 0.89966 0.90248 0.88936 0.92135 0.91860 0.88950 0.90511 0.82975 0.83174 0.81166 0.91045 0.89594 0.96029 0.97317 0.94366 0.93203 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.03 9.29 127.77 1.19 3.22 16 2 N -0.59 -16.14 2.90 -813.90 -2.36 -18.50 16 3 C 0.52 14.72 6.46 87.65 0.57 15.29 16 4 O -0.55 -17.74 12.58 -3.05 -0.04 -17.78 16 5 C 0.00 -0.11 0.64 -53.67 -0.03 -0.15 16 6 C -0.15 -3.19 7.99 71.98 0.57 -2.62 16 7 C -0.16 -3.50 7.86 71.98 0.57 -2.93 16 8 C -0.19 -4.73 5.04 24.59 0.12 -4.60 16 9 C -0.13 -2.78 9.39 21.22 0.20 -2.58 16 10 C -0.15 -2.96 10.18 21.22 0.22 -2.75 16 11 C -0.27 -5.75 11.23 66.72 0.75 -5.00 16 12 S 0.17 4.38 19.59 -56.49 -1.11 3.28 16 13 C 0.11 3.31 1.32 46.55 0.06 3.37 16 14 H 0.14 3.84 2.73 -2.39 -0.01 3.83 16 15 C -0.14 -4.59 6.33 31.78 0.20 -4.39 16 16 C 0.19 8.49 5.37 86.73 0.47 8.96 16 17 N -0.62 -29.19 3.40 -691.01 -2.35 -31.53 16 18 C -0.24 -12.72 10.28 84.03 0.86 -11.86 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 21 N -0.95 -54.16 10.31 21.65 0.22 -53.94 16 22 Si 0.97 43.76 29.55 68.60 2.03 45.79 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 C 0.12 4.52 6.56 87.02 0.57 5.09 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.07 1.83 7.65 -2.39 -0.02 1.81 16 29 H 0.08 2.07 5.91 -2.39 -0.01 2.06 16 30 H 0.08 1.81 4.08 -2.39 -0.01 1.80 16 31 H 0.09 1.63 7.78 -2.39 -0.02 1.61 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.44 8.02 -2.39 -0.02 1.42 16 34 H 0.09 1.73 8.03 -2.39 -0.02 1.71 16 35 H 0.08 1.93 3.73 -2.39 -0.01 1.92 16 36 H 0.15 2.55 7.97 -2.91 -0.02 2.53 16 37 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.07 2.23 7.37 -2.39 -0.02 2.22 16 40 H 0.09 2.46 7.47 -2.39 -0.02 2.45 16 41 H 0.02 1.08 7.38 -2.39 -0.02 1.07 16 42 H 0.01 0.45 7.51 -2.39 -0.02 0.43 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.05 1.76 7.35 -2.38 -0.02 1.74 16 45 H 0.03 1.14 5.93 -2.38 -0.01 1.12 16 Total: -1.00 -63.40 350.51 4.18 -59.22 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.00 Total: 17.18 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 6.78 Total: -3.71 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.48 Total: -103.97 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.04 Total: -17.78 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.11 Total: 3.28 kcal Total: -63.40 4.18 -59.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033324665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.391 kcal (2) G-P(sol) polarization free energy of solvation -63.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds