Wall clock time and date at job start Tue Mar 31 2020 13:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47139 * 2 1 4 4 S 1.70620 * 124.52212 * 269.97512 * 3 2 1 5 5 C 1.75840 * 91.56156 * 180.02562 * 4 3 2 6 6 C 1.46578 * 125.45582 * 179.97438 * 5 4 3 7 7 O 1.21711 * 119.99886 * 188.29090 * 6 5 4 8 8 N 1.34775 * 120.00508 * 8.29383 * 6 5 4 9 9 C 1.46499 * 119.99685 * 5.47176 * 8 6 5 10 10 C 1.46495 * 120.00492 * 185.47145 * 8 6 5 11 11 H 1.09000 * 110.63642 * 358.30966 * 10 8 6 12 12 C 1.55159 * 110.72041 * 234.97655 * 10 8 6 13 13 C 1.55132 * 101.48365 * 205.96888 * 12 10 8 14 14 N 1.47420 * 104.72297 * 37.29491 * 13 12 10 15 15 C 1.36936 * 125.64649 * 155.82155 * 14 13 12 16 16 H 1.07999 * 119.99697 * 199.46436 * 15 14 13 17 17 C 1.38811 * 120.00219 * 19.46355 * 15 14 13 18 18 N 1.31624 * 119.99847 * 29.81818 * 17 15 14 19 19 Si 1.86801 * 119.99984 * 209.82113 * 17 15 14 20 20 H 1.48506 * 109.46901 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47190 * 299.99712 * 19 17 15 22 22 H 1.48500 * 109.47351 * 60.00070 * 19 17 15 23 23 C 1.47012 * 108.70515 * 335.55168 * 14 13 12 24 24 C 1.36647 * 109.08248 * 0.26677 * 5 4 3 25 25 C 1.33819 * 124.52375 * 90.00143 * 3 2 1 26 26 C 1.50701 * 122.44391 * 359.97438 * 25 3 2 27 27 H 1.08994 * 109.47118 * 299.99546 * 1 2 3 28 28 H 1.09004 * 109.47042 * 60.00059 * 1 2 3 29 29 H 1.09009 * 109.47130 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47007 * 240.00045 * 2 1 3 31 31 H 1.08996 * 109.47230 * 120.00553 * 2 1 3 32 32 H 1.09009 * 109.47401 * 275.71281 * 9 8 6 33 33 H 1.09004 * 109.47625 * 35.70835 * 9 8 6 34 34 H 1.08997 * 109.47271 * 155.71202 * 9 8 6 35 35 H 1.08996 * 111.00334 * 324.20596 * 12 10 8 36 36 H 1.09002 * 111.00057 * 88.02057 * 12 10 8 37 37 H 1.09005 * 110.49657 * 278.44994 * 13 12 10 38 38 H 1.09001 * 110.33961 * 156.06474 * 13 12 10 39 39 H 0.96996 * 119.99860 * 6.31413 * 18 17 15 40 40 H 1.08996 * 109.88618 * 120.70360 * 23 14 13 41 41 H 1.09004 * 109.88682 * 241.87577 * 23 14 13 42 42 H 1.07998 * 123.35267 * 179.73914 * 24 5 4 43 43 H 1.09000 * 109.47277 * 90.00493 * 26 25 3 44 44 H 1.09003 * 109.46663 * 209.99796 * 26 25 3 45 45 H 1.09001 * 109.47297 * 329.99510 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 16 2.3552 2.3322 -1.4058 5 6 2.8474 3.7231 -0.4491 6 6 3.3028 5.0077 -0.9883 7 8 3.7627 5.8522 -0.2421 8 7 3.2122 5.2540 -2.3102 9 6 2.5501 4.2889 -3.1914 10 6 3.7757 6.4867 -2.8661 11 1 4.2029 7.1042 -2.0760 12 6 2.6997 7.2725 -3.6612 13 6 3.5763 8.0690 -4.6630 14 7 4.6646 7.1435 -5.0268 15 6 5.3991 7.1900 -6.1816 16 1 5.9443 6.3176 -6.5102 17 6 5.4429 8.3584 -6.9298 18 7 5.3217 9.5260 -6.3344 19 14 5.6738 8.2737 -8.7815 20 1 5.6855 9.6487 -9.3423 21 1 6.9619 7.6020 -9.0895 22 1 4.5570 7.5030 -9.3849 23 6 4.8350 6.1663 -3.9418 24 6 2.7434 3.4122 0.8775 25 6 2.2852 2.1358 1.1025 26 6 2.0881 1.5801 2.4894 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2599 3.5133 -3.4794 33 1 1.7092 3.8351 -2.6667 34 1 2.1885 4.8000 -4.0836 35 1 2.0249 6.5930 -4.1818 36 1 2.1452 7.9459 -3.0076 37 1 3.9813 8.9631 -4.1888 38 1 2.9951 8.3369 -5.5453 39 1 5.2939 9.5761 -5.3661 40 1 4.6815 5.1572 -4.3241 41 1 5.8344 6.2557 -3.5159 42 1 2.9931 4.1018 1.6703 43 1 3.0094 1.1032 2.8241 44 1 1.8295 2.3897 3.1718 45 1 1.2829 0.8455 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033644647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:07 Heat of formation + Delta-G solvation = 16.928236 kcal Electronic energy + Delta-G solvation = -25008.046204 eV Core-core repulsion = 21538.731456 eV Total energy + Delta-G solvation = -3469.314748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.07217 -38.79925 -37.42149 -35.02203 -34.05564 -32.37017 -30.59137 -29.22325 -28.22818 -27.41568 -26.85870 -24.94147 -23.95384 -22.64365 -20.84198 -20.34073 -19.31900 -18.44436 -18.13439 -17.52392 -16.38391 -16.22381 -15.40332 -15.07456 -14.58845 -14.44412 -14.25745 -13.99694 -13.71763 -13.49910 -13.31070 -13.20277 -13.09705 -12.88913 -12.69483 -12.48759 -12.29291 -12.23503 -11.88038 -11.65193 -11.59638 -11.43989 -11.10980 -10.77457 -10.71336 -10.60227 -10.56160 -10.12006 -10.02528 -9.89437 -9.57047 -8.88408 -8.53929 -8.42939 -8.35694 -6.95537 -6.12108 -3.17918 0.39122 1.34151 1.79464 2.19729 2.96977 3.18741 3.49610 3.53146 3.71436 4.37153 4.46965 4.59057 4.65030 4.88458 4.90563 4.97693 5.05881 5.15068 5.15595 5.21625 5.31520 5.35930 5.42244 5.43039 5.46236 5.52637 5.56537 5.57360 5.63758 5.72920 5.76977 5.82338 5.95467 6.08728 6.15939 6.29206 6.33124 6.39831 6.59497 6.82124 6.90325 7.00833 7.41588 7.79751 8.15462 8.47432 8.99668 9.79056 10.34881 11.19389 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.002763 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.634363 B =10131.746548 C =10736.301530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.223 4.223 4 S 0.225 5.775 5 C -0.264 4.264 6 C 0.588 3.412 7 O -0.533 6.533 8 N -0.596 5.596 9 C 0.060 3.940 10 C 0.129 3.871 11 H 0.107 0.893 12 C -0.144 4.144 13 C 0.146 3.854 14 N -0.599 5.599 15 C -0.340 4.340 16 H 0.064 0.936 17 C -0.023 4.023 18 N -0.910 5.910 19 Si 1.063 2.937 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.128 3.872 24 C -0.050 4.050 25 C -0.123 4.123 26 C -0.094 4.094 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.053 0.947 39 H 0.269 0.731 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.393 -19.594 13.784 26.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.342 4.342 4 S 0.496 5.504 5 C -0.384 4.384 6 C 0.375 3.625 7 O -0.412 6.412 8 N -0.328 5.328 9 C -0.085 4.085 10 C 0.026 3.974 11 H 0.125 0.875 12 C -0.183 4.183 13 C 0.020 3.980 14 N -0.326 5.326 15 C -0.467 4.467 16 H 0.081 0.919 17 C -0.226 4.226 18 N -0.550 5.550 19 Si 0.893 3.107 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.221 1.221 23 C 0.001 3.999 24 C -0.084 4.084 25 C -0.136 4.136 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.167 0.833 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.124 -18.550 11.113 24.318 hybrid contribution 0.173 -0.763 2.960 3.062 sum -10.951 -19.313 14.073 26.286 Atomic orbital electron populations 1.21786 0.94225 1.01986 1.02571 1.20095 0.96220 0.89732 1.03223 1.24617 1.07688 1.02208 0.99692 1.83586 1.59947 1.01121 1.05757 1.24520 1.16505 0.99314 0.98038 1.17007 0.78422 0.85138 0.81887 1.90816 1.46394 1.46304 1.57664 1.47649 1.56866 1.21857 1.06398 1.21984 0.97419 0.92825 0.96272 1.22269 0.94751 0.84017 0.96387 0.87463 1.23237 0.97452 0.99239 0.98422 1.21553 0.88601 0.92369 0.95498 1.44512 1.36969 1.33599 1.17556 1.19688 1.30280 0.98485 0.98291 0.91856 1.25789 0.99426 0.91198 1.06141 1.70776 1.47643 1.24552 1.12026 0.83553 0.76049 0.75550 0.75563 1.21075 1.21969 1.22074 1.21589 0.95384 0.94384 0.88527 1.20566 0.96780 0.95826 0.95196 1.18604 1.04541 0.93995 0.96411 1.20505 1.01916 1.00919 0.91886 0.92264 0.92354 0.92009 0.90793 0.90119 0.91590 0.90800 0.88345 0.91162 0.91398 0.95242 0.92828 0.92000 0.95225 0.95501 0.83261 0.91394 0.91501 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.05 -0.36 5.72 -27.89 -0.16 -0.52 16 3 C -0.22 -2.09 5.53 -35.86 -0.20 -2.28 16 4 S 0.22 2.28 17.87 -107.50 -1.92 0.36 16 5 C -0.26 -3.55 6.19 -36.80 -0.23 -3.78 16 6 C 0.59 9.78 7.63 -12.90 -0.10 9.68 16 7 O -0.53 -10.61 16.23 5.18 0.08 -10.53 16 8 N -0.60 -9.49 2.88 -173.41 -0.50 -9.99 16 9 C 0.06 0.75 7.58 59.85 0.45 1.20 16 10 C 0.13 2.40 3.36 -66.10 -0.22 2.18 16 11 H 0.11 2.17 7.00 -51.93 -0.36 1.81 16 12 C -0.14 -2.62 6.60 -24.46 -0.16 -2.79 16 13 C 0.15 3.37 5.44 -2.41 -0.01 3.36 16 14 N -0.60 -15.25 3.26 -169.94 -0.55 -15.80 16 15 C -0.34 -9.62 9.98 -15.06 -0.15 -9.77 16 16 H 0.06 1.79 7.98 -52.49 -0.42 1.37 16 17 C -0.02 -0.66 5.07 -17.43 -0.09 -0.75 16 18 N -0.91 -27.59 12.99 55.49 0.72 -26.87 16 19 Si 1.06 25.23 30.01 -169.99 -5.10 20.13 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.13 2.76 6.88 -3.07 -0.02 2.74 16 24 C -0.05 -0.61 9.81 -40.44 -0.40 -1.01 16 25 C -0.12 -1.24 5.78 -106.45 -0.62 -1.85 16 26 C -0.09 -0.69 9.55 36.01 0.34 -0.34 16 27 H 0.06 0.36 7.80 -51.93 -0.41 -0.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.08 0.48 7.25 -51.93 -0.38 0.10 16 32 H 0.07 0.77 7.45 -51.92 -0.39 0.38 16 33 H 0.07 0.78 5.12 -27.67 -0.14 0.64 16 34 H 0.10 1.25 6.13 -51.93 -0.32 0.93 16 35 H 0.07 1.17 6.14 -51.93 -0.32 0.85 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.74 6.87 -51.93 -0.36 0.38 16 38 H 0.05 1.32 8.08 -51.93 -0.42 0.91 16 39 H 0.27 8.23 6.37 -40.82 -0.26 7.97 16 40 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.46 8.13 -51.93 -0.42 0.03 16 45 H 0.07 0.40 6.86 -51.93 -0.36 0.05 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -33.21 364.73 -9.63 -42.84 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.67 Total: -1.20 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.19 Total: -4.44 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.33 Total: -52.66 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.10 Total: 20.13 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.92 Total: 0.36 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.21 -9.63 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033644647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.766 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds