Wall clock time and date at job start Tue Mar 31 2020 13:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47139 * 2 1 4 4 S 1.70620 * 124.52212 * 269.97512 * 3 2 1 5 5 C 1.75840 * 91.56156 * 180.02562 * 4 3 2 6 6 C 1.46578 * 125.45582 * 179.97438 * 5 4 3 7 7 O 1.21711 * 119.99886 * 188.29090 * 6 5 4 8 8 N 1.34775 * 120.00508 * 8.29383 * 6 5 4 9 9 C 1.46499 * 119.99685 * 5.47176 * 8 6 5 10 10 C 1.46495 * 120.00492 * 185.47145 * 8 6 5 11 11 H 1.09000 * 110.63642 * 358.30966 * 10 8 6 12 12 C 1.55159 * 110.72041 * 234.97655 * 10 8 6 13 13 C 1.55132 * 101.48365 * 205.96888 * 12 10 8 14 14 N 1.47420 * 104.72297 * 37.29491 * 13 12 10 15 15 C 1.36936 * 125.64649 * 155.82155 * 14 13 12 16 16 H 1.07999 * 119.99697 * 199.46436 * 15 14 13 17 17 C 1.38811 * 120.00219 * 19.46355 * 15 14 13 18 18 N 1.31624 * 119.99847 * 29.81818 * 17 15 14 19 19 Si 1.86801 * 119.99984 * 209.82113 * 17 15 14 20 20 H 1.48506 * 109.46901 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47190 * 299.99712 * 19 17 15 22 22 H 1.48500 * 109.47351 * 60.00070 * 19 17 15 23 23 C 1.47012 * 108.70515 * 335.55168 * 14 13 12 24 24 C 1.36647 * 109.08248 * 0.26677 * 5 4 3 25 25 C 1.33819 * 124.52375 * 90.00143 * 3 2 1 26 26 C 1.50701 * 122.44391 * 359.97438 * 25 3 2 27 27 H 1.08994 * 109.47118 * 299.99546 * 1 2 3 28 28 H 1.09004 * 109.47042 * 60.00059 * 1 2 3 29 29 H 1.09009 * 109.47130 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47007 * 240.00045 * 2 1 3 31 31 H 1.08996 * 109.47230 * 120.00553 * 2 1 3 32 32 H 1.09009 * 109.47401 * 275.71281 * 9 8 6 33 33 H 1.09004 * 109.47625 * 35.70835 * 9 8 6 34 34 H 1.08997 * 109.47271 * 155.71202 * 9 8 6 35 35 H 1.08996 * 111.00334 * 324.20596 * 12 10 8 36 36 H 1.09002 * 111.00057 * 88.02057 * 12 10 8 37 37 H 1.09005 * 110.49657 * 278.44994 * 13 12 10 38 38 H 1.09001 * 110.33961 * 156.06474 * 13 12 10 39 39 H 0.96996 * 119.99860 * 6.31413 * 18 17 15 40 40 H 1.08996 * 109.88618 * 120.70360 * 23 14 13 41 41 H 1.09004 * 109.88682 * 241.87577 * 23 14 13 42 42 H 1.07998 * 123.35267 * 179.73914 * 24 5 4 43 43 H 1.09000 * 109.47277 * 90.00493 * 26 25 3 44 44 H 1.09003 * 109.46663 * 209.99796 * 26 25 3 45 45 H 1.09001 * 109.47297 * 329.99510 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 16 2.3552 2.3322 -1.4058 5 6 2.8474 3.7231 -0.4491 6 6 3.3028 5.0077 -0.9883 7 8 3.7627 5.8522 -0.2421 8 7 3.2122 5.2540 -2.3102 9 6 2.5501 4.2889 -3.1914 10 6 3.7757 6.4867 -2.8661 11 1 4.2029 7.1042 -2.0760 12 6 2.6997 7.2725 -3.6612 13 6 3.5763 8.0690 -4.6630 14 7 4.6646 7.1435 -5.0268 15 6 5.3991 7.1900 -6.1816 16 1 5.9443 6.3176 -6.5102 17 6 5.4429 8.3584 -6.9298 18 7 5.3217 9.5260 -6.3344 19 14 5.6738 8.2737 -8.7815 20 1 5.6855 9.6487 -9.3423 21 1 6.9619 7.6020 -9.0895 22 1 4.5570 7.5030 -9.3849 23 6 4.8350 6.1663 -3.9418 24 6 2.7434 3.4122 0.8775 25 6 2.2852 2.1358 1.1025 26 6 2.0881 1.5801 2.4894 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2599 3.5133 -3.4794 33 1 1.7092 3.8351 -2.6667 34 1 2.1885 4.8000 -4.0836 35 1 2.0249 6.5930 -4.1818 36 1 2.1452 7.9459 -3.0076 37 1 3.9813 8.9631 -4.1888 38 1 2.9951 8.3369 -5.5453 39 1 5.2939 9.5761 -5.3661 40 1 4.6815 5.1572 -4.3241 41 1 5.8344 6.2557 -3.5159 42 1 2.9931 4.1018 1.6703 43 1 3.0094 1.1032 2.8241 44 1 1.8295 2.3897 3.1718 45 1 1.2829 0.8455 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033644647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:06 Heat of formation + Delta-G solvation = -2.278025 kcal Electronic energy + Delta-G solvation = -25008.879050 eV Core-core repulsion = 21538.731456 eV Total energy + Delta-G solvation = -3470.147594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.38756 -39.76087 -38.95585 -36.54674 -34.80505 -34.20865 -31.52923 -30.94700 -29.64897 -28.23996 -28.09917 -26.52950 -25.36405 -23.33988 -22.26837 -22.08211 -20.62246 -19.58975 -19.35586 -19.21338 -17.68541 -17.18347 -16.63347 -16.34347 -16.11064 -15.74951 -15.32255 -15.16127 -15.12821 -14.96088 -14.49645 -14.44331 -14.16836 -13.98869 -13.69893 -13.47301 -13.37323 -13.08076 -13.02442 -12.75811 -12.65809 -12.55706 -12.51990 -12.42747 -12.19546 -11.98886 -11.89468 -11.78216 -11.63147 -11.38216 -11.21140 -10.53918 -10.02131 -9.52810 -9.27065 -9.07868 -8.36723 -5.40399 -0.53381 0.46304 0.96590 1.28521 1.58372 1.65722 1.70534 1.85960 2.03502 2.63869 3.13650 3.32920 3.51790 3.64925 3.74582 3.78680 3.94803 4.03318 4.11052 4.20460 4.29253 4.32895 4.38977 4.42185 4.46269 4.51096 4.63582 4.73056 4.81377 4.85245 4.85326 4.87437 4.89597 4.98522 5.01721 5.06814 5.13333 5.16535 5.31447 5.35833 5.43835 5.56013 5.65306 6.15741 6.26244 6.82210 6.88697 7.64591 8.22774 8.93250 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.002763 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.634363 B =10131.746548 C =10736.301530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.210 4.210 4 S 0.262 5.738 5 C -0.304 4.304 6 C 0.585 3.415 7 O -0.579 6.579 8 N -0.595 5.595 9 C 0.055 3.945 10 C 0.143 3.857 11 H 0.086 0.914 12 C -0.123 4.123 13 C 0.149 3.851 14 N -0.618 5.618 15 C -0.351 4.351 16 H 0.061 0.939 17 C -0.075 4.075 18 N -0.938 5.938 19 Si 1.118 2.882 20 H -0.292 1.292 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.130 3.870 24 C -0.049 4.049 25 C -0.137 4.137 26 C -0.092 4.092 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.004 0.996 38 H 0.034 0.966 39 H 0.253 0.747 40 H 0.046 0.954 41 H 0.005 0.995 42 H 0.141 0.859 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -23.042 13.611 29.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.329 4.329 4 S 0.534 5.466 5 C -0.424 4.424 6 C 0.375 3.625 7 O -0.461 6.461 8 N -0.326 5.326 9 C -0.089 4.089 10 C 0.039 3.961 11 H 0.104 0.896 12 C -0.162 4.162 13 C 0.023 3.977 14 N -0.345 5.345 15 C -0.479 4.479 16 H 0.078 0.922 17 C -0.271 4.271 18 N -0.580 5.580 19 Si 0.942 3.058 20 H -0.218 1.218 21 H -0.201 1.201 22 H -0.201 1.201 23 C 0.004 3.996 24 C -0.084 4.084 25 C -0.148 4.148 26 C -0.151 4.151 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.022 0.978 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.023 0.977 42 H 0.159 0.841 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.898 -22.052 10.945 27.793 hybrid contribution 0.723 0.176 3.110 3.198 sum -12.175 -21.876 14.055 28.711 Atomic orbital electron populations 1.21789 0.93340 1.03062 1.02280 1.20267 0.96842 0.87875 1.04514 1.25054 1.05591 1.03256 0.99020 1.83272 1.58914 0.99139 1.05276 1.24277 1.19501 0.99415 0.99212 1.17464 0.77555 0.85888 0.81594 1.90779 1.48530 1.48124 1.58696 1.47607 1.56787 1.21402 1.06795 1.22233 0.98251 0.92403 0.95987 1.21812 0.94150 0.85270 0.94898 0.89599 1.23097 0.96766 0.99096 0.97240 1.21456 0.88563 0.92038 0.95647 1.44766 1.37402 1.34342 1.18014 1.19974 1.30242 0.98291 0.99389 0.92161 1.27288 0.99052 0.90692 1.10109 1.70907 1.50447 1.25617 1.11022 0.82837 0.77304 0.75449 0.70253 1.21827 1.20057 1.20102 1.21629 0.95349 0.94209 0.88444 1.20737 0.96140 0.96754 0.94725 1.18797 1.04735 0.93155 0.98097 1.20560 1.02904 1.01353 0.90241 0.92477 0.92778 0.90317 0.89703 0.88692 0.90445 0.88542 0.88104 0.88761 0.89532 0.97828 0.94788 0.93730 0.93592 0.97706 0.84123 0.90663 0.91314 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 71.98 0.71 -0.49 16 2 C -0.06 -0.54 5.72 29.85 0.17 -0.37 16 3 C -0.21 -3.30 5.53 24.68 0.14 -3.17 16 4 S 0.26 4.67 17.87 -56.49 -1.01 3.66 16 5 C -0.30 -7.97 6.19 24.07 0.15 -7.82 16 6 C 0.58 19.63 7.63 86.42 0.66 20.28 16 7 O -0.58 -24.01 16.23 -4.38 -0.07 -24.08 16 8 N -0.60 -18.64 2.88 -820.75 -2.37 -21.00 16 9 C 0.05 1.25 7.58 127.77 0.97 2.22 16 10 C 0.14 5.41 3.36 46.18 0.15 5.57 16 11 H 0.09 3.65 7.00 -2.39 -0.02 3.63 16 12 C -0.12 -4.43 6.60 32.07 0.21 -4.22 16 13 C 0.15 7.09 5.44 86.93 0.47 7.57 16 14 N -0.62 -32.16 3.26 -691.56 -2.25 -34.41 16 15 C -0.35 -20.14 9.98 84.03 0.84 -19.30 16 16 H 0.06 3.43 7.98 -2.91 -0.02 3.41 16 17 C -0.07 -4.34 5.07 84.86 0.43 -3.91 16 18 N -0.94 -58.60 12.99 21.65 0.28 -58.32 16 19 Si 1.12 50.97 30.01 68.60 2.06 53.03 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 23 C 0.13 5.70 6.88 86.73 0.60 6.30 16 24 C -0.05 -1.17 9.81 21.72 0.21 -0.95 16 25 C -0.14 -2.46 5.78 -21.05 -0.12 -2.58 16 26 C -0.09 -1.12 9.55 71.24 0.68 -0.44 16 27 H 0.06 0.51 7.80 -2.39 -0.02 0.49 16 28 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.09 0.72 7.25 -2.39 -0.02 0.70 16 32 H 0.08 1.61 7.45 -2.38 -0.02 1.60 16 33 H 0.10 1.77 5.12 -17.81 -0.09 1.68 16 34 H 0.10 2.29 6.13 -2.39 -0.01 2.27 16 35 H 0.09 2.96 6.14 -2.39 -0.01 2.94 16 36 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.00 0.20 6.87 -2.38 -0.02 0.19 16 38 H 0.03 1.73 8.08 -2.39 -0.02 1.71 16 39 H 0.25 16.22 6.37 -92.71 -0.59 15.63 16 40 H 0.05 1.88 7.07 -2.39 -0.02 1.86 16 41 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 42 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 45 H 0.08 0.73 6.86 -2.39 -0.02 0.71 16 Total: -1.00 -74.76 364.73 4.00 -70.75 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.09 Total: 11.69 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.27 Total: -1.31 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -4.34 Total: -113.74 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.07 Total: -24.08 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.06 Total: 53.03 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.01 Total: 3.66 kcal Total: -74.76 4.00 -70.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033644647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.476 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds