Wall clock time and date at job start Tue Mar 31 2020 13:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47291 * 2 1 4 4 S 1.70618 * 124.51793 * 270.02487 * 3 2 1 5 5 C 1.75828 * 91.56160 * 179.97438 * 4 3 2 6 6 C 1.46590 * 125.45798 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99735 * 188.44668 * 6 5 4 8 8 N 1.34773 * 119.99647 * 8.44769 * 6 5 4 9 9 C 1.46495 * 120.00562 * 359.04503 * 8 6 5 10 10 C 1.46501 * 119.99539 * 179.05034 * 8 6 5 11 11 H 1.09001 * 110.92051 * 356.09923 * 10 8 6 12 12 C 1.55156 * 111.00703 * 119.99957 * 10 8 6 13 13 C 1.54327 * 103.10574 * 153.66210 * 12 10 8 14 14 N 1.47020 * 107.26905 * 337.72068 * 13 12 10 15 15 C 1.36941 * 125.64693 * 178.90443 * 14 13 12 16 16 H 1.07996 * 119.99511 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00121 * 0.02562 * 15 14 13 18 18 N 1.31623 * 119.99955 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00106 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47015 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47069 * 120.00146 * 19 17 15 22 22 H 1.48503 * 109.46790 * 240.00065 * 19 17 15 23 23 C 1.47423 * 108.70528 * 358.93976 * 14 13 12 24 24 C 1.36645 * 109.08708 * 0.26500 * 5 4 3 25 25 C 1.33813 * 124.52657 * 89.99383 * 3 2 1 26 26 C 1.50701 * 122.44628 * 0.05280 * 25 3 2 27 27 H 1.09002 * 109.47425 * 300.00252 * 1 2 3 28 28 H 1.09001 * 109.47089 * 60.00460 * 1 2 3 29 29 H 1.09007 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47281 * 239.99322 * 2 1 3 31 31 H 1.09001 * 109.47089 * 119.99540 * 2 1 3 32 32 H 1.08999 * 109.47424 * 276.41688 * 9 8 6 33 33 H 1.09002 * 109.46969 * 36.41452 * 9 8 6 34 34 H 1.09003 * 109.47260 * 156.40940 * 9 8 6 35 35 H 1.09001 * 110.71878 * 35.20779 * 12 10 8 36 36 H 1.09005 * 110.71884 * 272.11559 * 12 10 8 37 37 H 1.09003 * 109.87917 * 97.13724 * 13 12 10 38 38 H 1.08998 * 109.88352 * 218.14659 * 13 12 10 39 39 H 0.96992 * 120.00006 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36932 * 142.96987 * 23 14 13 41 41 H 1.09002 * 110.36902 * 265.29092 * 23 14 13 42 42 H 1.07992 * 123.35565 * 179.73381 * 24 5 4 43 43 H 1.08998 * 109.47142 * 89.99420 * 26 25 3 44 44 H 1.09003 * 109.46629 * 209.99169 * 26 25 3 45 45 H 1.08993 * 109.47026 * 329.99187 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3541 2.3325 -1.4058 5 6 2.8455 3.7236 -0.4493 6 6 3.2999 5.0087 -0.9886 7 8 3.7621 5.8523 -0.2430 8 7 3.2057 5.2561 -2.3101 9 6 2.6687 4.2328 -3.2105 10 6 3.6405 6.5483 -2.8462 11 1 3.9481 7.2189 -2.0438 12 6 4.7784 6.3651 -3.8848 13 6 4.6313 7.6078 -4.7880 14 7 3.2502 8.0908 -4.6441 15 6 2.7203 9.1900 -5.2656 16 1 1.6898 9.4634 -5.0932 17 6 3.5077 9.9529 -6.1170 18 7 4.7635 9.6194 -6.3274 19 14 2.7851 11.4528 -6.9641 20 1 1.3640 11.6111 -6.5631 21 1 3.5491 12.6622 -6.5659 22 1 2.8679 11.2775 -8.4365 23 6 2.5304 7.1963 -3.7194 24 6 2.7423 3.4127 0.8773 25 6 2.2851 2.1359 1.1024 26 6 2.0895 1.5798 2.4894 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.4611 3.5351 -3.4814 33 1 1.8653 3.6931 -2.7091 34 1 2.2800 4.7087 -4.1108 35 1 4.6321 5.4508 -4.4600 36 1 5.7515 6.3584 -3.3936 37 1 5.3298 8.3819 -4.4701 38 1 4.8255 7.3369 -5.8258 39 1 5.3135 10.1522 -6.9226 40 1 1.8434 7.7685 -3.0958 41 1 1.9904 6.4302 -4.2759 42 1 2.9918 4.1024 1.6700 43 1 3.0114 1.1038 2.8233 44 1 1.8305 2.3891 3.1721 45 1 1.2851 0.8444 2.4758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033644649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:12 Heat of formation + Delta-G solvation = 22.979316 kcal Electronic energy + Delta-G solvation = -24937.235811 eV Core-core repulsion = 21468.183457 eV Total energy + Delta-G solvation = -3469.052354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.97424 -38.73164 -37.23806 -34.90431 -34.01125 -32.20043 -30.55677 -29.28913 -28.04221 -27.28316 -26.92838 -25.05586 -23.97496 -22.60084 -20.77214 -20.13638 -19.29412 -18.40236 -18.08909 -17.00048 -16.27290 -16.11293 -15.38547 -14.94658 -14.63636 -14.50728 -14.27183 -14.08279 -13.71096 -13.47205 -13.18021 -13.05836 -12.85460 -12.70872 -12.43468 -12.40472 -12.22915 -12.11066 -11.83501 -11.74179 -11.59079 -11.40875 -10.95362 -10.88500 -10.79449 -10.50229 -10.33116 -10.07646 -9.86479 -9.78672 -9.70148 -8.84379 -8.63613 -8.49117 -8.30862 -6.86237 -5.73056 -3.07551 0.43914 1.38183 1.82982 2.24731 3.03336 3.25740 3.39807 3.45432 3.47850 4.40955 4.48877 4.52555 4.67765 4.91583 4.92643 5.01520 5.09205 5.19115 5.22507 5.38761 5.40228 5.44940 5.46536 5.48854 5.57718 5.59868 5.61021 5.67104 5.69777 5.80677 5.82767 5.86036 6.16760 6.20169 6.26515 6.33668 6.47362 6.52700 6.65487 6.91894 7.47508 7.54372 7.59103 7.80849 8.20719 8.24902 9.19335 9.79113 10.43788 11.38526 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.002630 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.386397 B =10642.577814 C =10911.183861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.228 4.228 4 S 0.225 5.775 5 C -0.262 4.262 6 C 0.586 3.414 7 O -0.532 6.532 8 N -0.595 5.595 9 C 0.060 3.940 10 C 0.124 3.876 11 H 0.109 0.891 12 C -0.152 4.152 13 C 0.179 3.821 14 N -0.602 5.602 15 C -0.229 4.229 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.131 3.869 24 C -0.051 4.051 25 C -0.123 4.123 26 C -0.094 4.094 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.043 0.957 41 H 0.023 0.977 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 -22.099 12.442 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.347 4.347 4 S 0.496 5.504 5 C -0.382 4.382 6 C 0.374 3.626 7 O -0.411 6.411 8 N -0.326 5.326 9 C -0.086 4.086 10 C 0.020 3.980 11 H 0.127 0.873 12 C -0.191 4.191 13 C 0.054 3.946 14 N -0.329 5.329 15 C -0.357 4.357 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.003 3.997 24 C -0.084 4.084 25 C -0.135 4.135 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.167 0.833 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.989 -21.788 11.107 25.178 hybrid contribution -0.206 0.974 1.018 1.424 sum -6.195 -20.814 12.126 24.872 Atomic orbital electron populations 1.21786 0.94266 1.01939 1.02600 1.20083 0.96190 0.89819 1.03119 1.24725 1.07664 1.02154 1.00111 1.83597 1.60246 1.01000 1.05566 1.24533 1.16374 0.99285 0.98033 1.17013 0.78526 0.85156 0.81939 1.90820 1.45982 1.46538 1.57755 1.47630 1.62480 1.16360 1.06116 1.22058 0.98917 0.91471 0.96124 1.22591 0.96068 0.82591 0.96709 0.87263 1.23246 0.97499 1.00828 0.97565 1.21152 0.86623 0.90531 0.96253 1.44386 1.08179 1.29131 1.51204 1.19098 0.95609 1.00936 1.20025 0.90288 1.24819 0.96024 0.99420 1.00123 1.69967 1.06149 1.40287 1.40458 0.86020 0.78068 0.82475 0.79045 1.20478 1.21702 1.21733 1.21854 0.93302 0.93143 0.91376 1.20562 0.96823 0.95798 0.95222 1.18597 1.04544 0.94003 0.96373 1.20504 1.01862 1.00907 0.91971 0.92274 0.92335 0.92058 0.90861 0.90209 0.91610 0.91087 0.88014 0.92153 0.91826 0.93248 0.93559 0.93726 0.93896 0.95920 0.83280 0.91445 0.91516 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.05 -0.36 5.72 -27.89 -0.16 -0.52 16 3 C -0.23 -2.14 5.53 -35.86 -0.20 -2.33 16 4 S 0.22 2.25 17.85 -107.50 -1.92 0.33 16 5 C -0.26 -3.54 6.24 -36.79 -0.23 -3.77 16 6 C 0.59 9.83 7.64 -12.89 -0.10 9.73 16 7 O -0.53 -10.77 16.24 5.19 0.08 -10.68 16 8 N -0.59 -9.47 2.92 -172.76 -0.50 -9.97 16 9 C 0.06 0.72 7.84 59.84 0.47 1.19 16 10 C 0.12 2.34 3.47 -65.52 -0.23 2.12 16 11 H 0.11 2.31 7.02 -51.93 -0.36 1.95 16 12 C -0.15 -2.90 6.53 -24.89 -0.16 -3.07 16 13 C 0.18 4.35 5.37 -3.06 -0.02 4.34 16 14 N -0.60 -15.40 3.40 -169.77 -0.58 -15.97 16 15 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.03 10.31 55.49 0.57 -26.46 16 19 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C 0.13 2.72 6.78 -2.27 -0.02 2.71 16 24 C -0.05 -0.63 9.81 -40.43 -0.40 -1.02 16 25 C -0.12 -1.25 5.78 -106.45 -0.62 -1.87 16 26 C -0.09 -0.70 9.55 36.01 0.34 -0.36 16 27 H 0.06 0.38 7.81 -51.93 -0.41 -0.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.48 7.25 -51.93 -0.38 0.10 16 32 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 33 H 0.07 0.76 4.50 -22.50 -0.10 0.66 16 34 H 0.10 1.26 5.97 -51.93 -0.31 0.95 16 35 H 0.06 1.04 7.33 -51.93 -0.38 0.66 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 38 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.02 0.45 5.99 -51.93 -0.31 0.14 16 42 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 45 H 0.06 0.41 6.86 -51.93 -0.36 0.06 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -32.43 364.14 -9.78 -42.21 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.71 Total: -1.82 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.19 Total: -0.22 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.51 Total: -52.41 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.92 Total: 0.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.43 -9.78 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033644649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.191 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds