Wall clock time and date at job start Tue Mar 31 2020 13:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47291 * 2 1 4 4 S 1.70618 * 124.51793 * 270.02487 * 3 2 1 5 5 C 1.75828 * 91.56160 * 179.97438 * 4 3 2 6 6 C 1.46590 * 125.45798 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99735 * 188.44668 * 6 5 4 8 8 N 1.34773 * 119.99647 * 8.44769 * 6 5 4 9 9 C 1.46495 * 120.00562 * 359.04503 * 8 6 5 10 10 C 1.46501 * 119.99539 * 179.05034 * 8 6 5 11 11 H 1.09001 * 110.92051 * 356.09923 * 10 8 6 12 12 C 1.55156 * 111.00703 * 119.99957 * 10 8 6 13 13 C 1.54327 * 103.10574 * 153.66210 * 12 10 8 14 14 N 1.47020 * 107.26905 * 337.72068 * 13 12 10 15 15 C 1.36941 * 125.64693 * 178.90443 * 14 13 12 16 16 H 1.07996 * 119.99511 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00121 * 0.02562 * 15 14 13 18 18 N 1.31623 * 119.99955 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00106 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47015 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47069 * 120.00146 * 19 17 15 22 22 H 1.48503 * 109.46790 * 240.00065 * 19 17 15 23 23 C 1.47423 * 108.70528 * 358.93976 * 14 13 12 24 24 C 1.36645 * 109.08708 * 0.26500 * 5 4 3 25 25 C 1.33813 * 124.52657 * 89.99383 * 3 2 1 26 26 C 1.50701 * 122.44628 * 0.05280 * 25 3 2 27 27 H 1.09002 * 109.47425 * 300.00252 * 1 2 3 28 28 H 1.09001 * 109.47089 * 60.00460 * 1 2 3 29 29 H 1.09007 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47281 * 239.99322 * 2 1 3 31 31 H 1.09001 * 109.47089 * 119.99540 * 2 1 3 32 32 H 1.08999 * 109.47424 * 276.41688 * 9 8 6 33 33 H 1.09002 * 109.46969 * 36.41452 * 9 8 6 34 34 H 1.09003 * 109.47260 * 156.40940 * 9 8 6 35 35 H 1.09001 * 110.71878 * 35.20779 * 12 10 8 36 36 H 1.09005 * 110.71884 * 272.11559 * 12 10 8 37 37 H 1.09003 * 109.87917 * 97.13724 * 13 12 10 38 38 H 1.08998 * 109.88352 * 218.14659 * 13 12 10 39 39 H 0.96992 * 120.00006 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36932 * 142.96987 * 23 14 13 41 41 H 1.09002 * 110.36902 * 265.29092 * 23 14 13 42 42 H 1.07992 * 123.35565 * 179.73381 * 24 5 4 43 43 H 1.08998 * 109.47142 * 89.99420 * 26 25 3 44 44 H 1.09003 * 109.46629 * 209.99169 * 26 25 3 45 45 H 1.08993 * 109.47026 * 329.99187 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3541 2.3325 -1.4058 5 6 2.8455 3.7236 -0.4493 6 6 3.2999 5.0087 -0.9886 7 8 3.7621 5.8523 -0.2430 8 7 3.2057 5.2561 -2.3101 9 6 2.6687 4.2328 -3.2105 10 6 3.6405 6.5483 -2.8462 11 1 3.9481 7.2189 -2.0438 12 6 4.7784 6.3651 -3.8848 13 6 4.6313 7.6078 -4.7880 14 7 3.2502 8.0908 -4.6441 15 6 2.7203 9.1900 -5.2656 16 1 1.6898 9.4634 -5.0932 17 6 3.5077 9.9529 -6.1170 18 7 4.7635 9.6194 -6.3274 19 14 2.7851 11.4528 -6.9641 20 1 1.3640 11.6111 -6.5631 21 1 3.5491 12.6622 -6.5659 22 1 2.8679 11.2775 -8.4365 23 6 2.5304 7.1963 -3.7194 24 6 2.7423 3.4127 0.8773 25 6 2.2851 2.1359 1.1024 26 6 2.0895 1.5798 2.4894 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.4611 3.5351 -3.4814 33 1 1.8653 3.6931 -2.7091 34 1 2.2800 4.7087 -4.1108 35 1 4.6321 5.4508 -4.4600 36 1 5.7515 6.3584 -3.3936 37 1 5.3298 8.3819 -4.4701 38 1 4.8255 7.3369 -5.8258 39 1 5.3135 10.1522 -6.9226 40 1 1.8434 7.7685 -3.0958 41 1 1.9904 6.4302 -4.2759 42 1 2.9918 4.1024 1.6700 43 1 3.0114 1.1038 2.8233 44 1 1.8305 2.3891 3.1721 45 1 1.2851 0.8444 2.4758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033644649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:11 Heat of formation + Delta-G solvation = 4.317922 kcal Electronic energy + Delta-G solvation = -24938.045030 eV Core-core repulsion = 21468.183457 eV Total energy + Delta-G solvation = -3469.861572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28007 -39.66876 -38.80377 -36.41271 -34.74294 -34.06491 -31.54330 -30.96511 -29.42418 -28.22542 -28.12851 -26.66308 -25.31155 -23.30278 -22.11303 -21.98345 -20.59297 -19.33134 -19.15346 -18.96742 -17.56343 -17.07070 -16.75140 -16.55041 -15.96825 -15.85167 -15.27518 -15.12211 -14.78254 -14.49898 -14.46651 -14.19543 -14.08602 -13.92432 -13.68818 -13.61519 -13.36981 -13.04156 -13.00118 -12.90632 -12.78109 -12.65706 -12.32465 -12.20652 -12.10091 -11.99151 -11.95148 -11.82530 -11.56555 -11.29527 -11.10986 -10.74462 -9.97583 -9.47372 -9.22425 -8.92879 -7.87093 -5.24139 -0.48697 0.50482 0.99857 1.33434 1.46040 1.47667 1.57767 1.76606 2.09535 2.49154 3.31531 3.42193 3.62179 3.78548 3.85374 3.93520 3.98517 4.13089 4.16121 4.23990 4.41331 4.44926 4.48966 4.49954 4.53050 4.57121 4.71064 4.83601 4.86009 4.87839 4.90224 4.92852 5.03853 5.05652 5.08661 5.15713 5.34332 5.41630 5.44634 5.48094 5.59107 5.59713 5.71114 6.15814 6.23013 6.95407 7.06858 7.72143 8.35945 9.23360 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.002630 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.386397 B =10642.577814 C =10911.183861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.216 4.216 4 S 0.271 5.729 5 C -0.304 4.304 6 C 0.583 3.417 7 O -0.581 6.581 8 N -0.593 5.593 9 C 0.053 3.947 10 C 0.139 3.861 11 H 0.081 0.919 12 C -0.133 4.133 13 C 0.189 3.811 14 N -0.624 5.624 15 C -0.243 4.243 16 H 0.084 0.916 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.981 3.019 20 H -0.265 1.265 21 H -0.294 1.294 22 H -0.289 1.289 23 C 0.132 3.868 24 C -0.051 4.051 25 C -0.137 4.137 26 C -0.092 4.092 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.010 0.990 38 H 0.020 0.980 39 H 0.248 0.752 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.139 0.861 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 -25.226 12.617 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.335 4.335 4 S 0.543 5.457 5 C -0.423 4.423 6 C 0.373 3.627 7 O -0.464 6.464 8 N -0.324 5.324 9 C -0.090 4.090 10 C 0.034 3.966 11 H 0.099 0.901 12 C -0.172 4.172 13 C 0.064 3.936 14 N -0.351 5.351 15 C -0.372 4.372 16 H 0.102 0.898 17 C -0.258 4.258 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.190 1.190 21 H -0.221 1.221 22 H -0.215 1.215 23 C 0.005 3.995 24 C -0.086 4.086 25 C -0.148 4.148 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.038 0.962 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.157 0.843 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.730 -24.963 11.281 28.463 hybrid contribution 0.266 1.821 1.032 2.110 sum -7.464 -23.141 12.312 27.255 Atomic orbital electron populations 1.21793 0.93535 1.03010 1.02206 1.20253 0.96672 0.87971 1.04518 1.25167 1.05572 1.03233 0.99510 1.83210 1.58989 0.98683 1.04827 1.24287 1.19315 0.99491 0.99230 1.17478 0.77650 0.85928 0.81657 1.90782 1.48244 1.48476 1.58848 1.47578 1.62413 1.15794 1.06568 1.22331 1.00227 0.90976 0.95507 1.22083 0.95174 0.83883 0.95428 0.90080 1.23052 0.98056 0.99349 0.96769 1.20872 0.85561 0.91478 0.95704 1.44650 1.09049 1.29462 1.51890 1.19477 0.95977 1.01757 1.19954 0.89846 1.25680 0.96498 1.02405 1.01196 1.70179 1.07336 1.41327 1.41096 0.84974 0.77889 0.78556 0.77671 1.18961 1.22108 1.21548 1.21970 0.93538 0.92985 0.90964 1.20717 0.96355 0.96734 0.94780 1.18777 1.04836 0.93162 0.98068 1.20554 1.02878 1.01275 0.90368 0.92649 0.92806 0.90325 0.89552 0.88794 0.89346 0.89329 0.87918 0.89345 0.91011 0.97198 0.96179 0.94260 0.94612 0.93359 0.84342 0.90611 0.91490 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 71.98 0.71 -0.54 16 2 C -0.06 -0.53 5.72 29.85 0.17 -0.36 16 3 C -0.22 -3.38 5.53 24.68 0.14 -3.24 16 4 S 0.27 4.66 17.85 -56.49 -1.01 3.65 16 5 C -0.30 -7.96 6.24 24.08 0.15 -7.81 16 6 C 0.58 19.70 7.64 86.42 0.66 20.36 16 7 O -0.58 -24.55 16.24 -4.36 -0.07 -24.62 16 8 N -0.59 -18.47 2.92 -818.69 -2.39 -20.86 16 9 C 0.05 1.16 7.84 127.77 1.00 2.16 16 10 C 0.14 5.32 3.47 46.55 0.16 5.48 16 11 H 0.08 3.59 7.02 -2.39 -0.02 3.57 16 12 C -0.13 -5.07 6.53 31.78 0.21 -4.86 16 13 C 0.19 9.49 5.37 86.73 0.47 9.96 16 14 N -0.62 -32.55 3.40 -691.02 -2.35 -34.90 16 15 C -0.24 -13.76 10.28 84.03 0.86 -12.90 16 16 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 17 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 18 N -0.95 -57.61 10.31 21.65 0.22 -57.38 16 19 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 C 0.13 5.50 6.78 87.03 0.59 6.09 16 24 C -0.05 -1.24 9.81 21.72 0.21 -1.03 16 25 C -0.14 -2.51 5.78 -21.05 -0.12 -2.63 16 26 C -0.09 -1.16 9.55 71.24 0.68 -0.48 16 27 H 0.05 0.53 7.81 -2.39 -0.02 0.51 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.71 7.25 -2.39 -0.02 0.69 16 32 H 0.09 1.57 7.82 -2.39 -0.02 1.55 16 33 H 0.09 1.63 4.50 -21.10 -0.10 1.53 16 34 H 0.10 2.26 5.97 -2.39 -0.01 2.24 16 35 H 0.09 2.88 7.33 -2.39 -0.02 2.86 16 36 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 37 H 0.01 0.56 7.38 -2.39 -0.02 0.54 16 38 H 0.02 1.10 7.50 -2.39 -0.02 1.08 16 39 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.81 5.99 -2.39 -0.01 1.80 16 42 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 45 H 0.08 0.76 6.86 -2.39 -0.02 0.74 16 Total: -1.00 -73.41 364.14 3.70 -69.71 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.90 Total: 9.30 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.36 Total: 6.95 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -4.51 Total: -113.13 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.07 Total: -24.62 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.01 Total: 3.65 kcal Total: -73.41 3.70 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033644649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.029 kcal (2) G-P(sol) polarization free energy of solvation -73.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds