Wall clock time and date at job start Tue Mar 31 2020 13:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47074 * 2 1 4 4 C 1.37467 * 122.45371 * 265.02156 * 3 2 1 5 5 C 1.36648 * 113.30104 * 179.74502 * 4 3 2 6 6 C 1.46579 * 125.46023 * 180.25295 * 5 4 3 7 7 O 1.21701 * 119.99983 * 351.50785 * 6 5 4 8 8 N 1.34778 * 120.00031 * 171.50929 * 6 5 4 9 9 C 1.46501 * 119.99705 * 0.31601 * 8 6 5 10 10 C 1.46493 * 120.00043 * 180.32136 * 8 6 5 11 11 H 1.08999 * 110.64340 * 358.30916 * 10 8 6 12 12 C 1.55154 * 110.71956 * 234.97453 * 10 8 6 13 13 C 1.54905 * 101.58327 * 277.13834 * 12 10 8 14 14 N 1.47426 * 104.83271 * 322.99037 * 13 12 10 15 15 C 1.36934 * 125.65057 * 204.16227 * 14 13 12 16 16 H 1.08004 * 120.00504 * 179.97438 * 15 14 13 17 17 C 1.38815 * 119.99914 * 359.95877 * 15 14 13 18 18 N 1.31615 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99719 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47278 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46640 * 120.00222 * 19 17 15 22 22 H 1.48501 * 109.47071 * 239.99893 * 19 17 15 23 23 C 1.47022 * 108.70157 * 24.12974 * 14 13 12 24 24 S 1.75833 * 109.07881 * 0.23466 * 5 4 3 25 25 C 1.33825 * 122.44678 * 85.21869 * 3 2 1 26 26 C 1.50699 * 124.52252 * 0.02562 * 25 3 2 27 27 H 1.09002 * 109.46938 * 300.00140 * 1 2 3 28 28 H 1.09003 * 109.46747 * 59.99654 * 1 2 3 29 29 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47218 * 240.00327 * 2 1 3 31 31 H 1.08998 * 109.47137 * 120.00081 * 2 1 3 32 32 H 1.08000 * 123.34869 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.46629 * 83.64341 * 9 8 6 34 34 H 1.08997 * 109.46829 * 203.63980 * 9 8 6 35 35 H 1.08992 * 109.47731 * 323.64620 * 9 8 6 36 36 H 1.08998 * 111.00633 * 35.21237 * 12 10 8 37 37 H 1.09007 * 111.00408 * 159.06084 * 12 10 8 38 38 H 1.09003 * 110.36988 * 204.15472 * 13 12 10 39 39 H 1.09002 * 110.46130 * 81.87336 * 13 12 10 40 40 H 0.97003 * 120.00201 * 180.02562 * 18 17 15 41 41 H 1.09008 * 109.87959 * 239.52146 * 23 14 13 42 42 H 1.08999 * 109.88834 * 118.36025 * 23 14 13 43 43 H 1.09001 * 109.46996 * 180.24153 * 26 25 3 44 44 H 1.08998 * 109.47493 * 300.24506 * 26 25 3 45 45 H 1.09004 * 109.46969 * 60.24444 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3731 2.0828 -1.1556 5 6 2.7998 3.3629 -0.9396 6 6 3.2220 4.3054 -1.9797 7 8 3.3581 3.9243 -3.1274 8 7 3.4596 5.5942 -1.6649 9 6 3.3026 6.0514 -0.2820 10 6 3.8749 6.5378 -2.7057 11 1 3.9719 6.0321 -3.6664 12 6 5.2024 7.2386 -2.3134 13 6 4.6936 8.3754 -1.3924 14 7 3.4264 8.8171 -2.0028 15 6 2.8537 10.0513 -1.8483 16 1 1.9192 10.2784 -2.3399 17 6 3.4739 11.0105 -1.0595 18 7 4.6127 10.7338 -0.4605 19 14 2.6929 12.6943 -0.8493 20 1 1.4254 12.7519 -1.6208 21 1 2.4078 12.9317 0.5886 22 1 3.6244 13.7378 -1.3481 23 6 2.8799 7.7133 -2.8055 24 16 2.7605 3.6982 0.7860 25 6 2.1829 2.1292 1.1254 26 6 1.8779 1.6117 2.5075 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3058 1.6371 -2.1370 33 1 4.2121 5.8339 0.2780 34 1 3.1187 7.1258 -0.2732 35 1 2.4603 5.5349 0.1781 36 1 5.8573 6.5583 -1.7690 37 1 5.7052 7.6430 -3.1920 38 1 5.4107 9.1961 -1.3711 39 1 4.5183 7.9995 -0.3844 40 1 5.0460 11.4040 0.0911 41 1 2.7782 8.0257 -3.8449 42 1 1.9097 7.4123 -2.4102 43 1 2.0837 2.3913 3.2410 44 1 0.8274 1.3267 2.5652 45 1 2.5021 0.7427 2.7160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033647502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:25 Heat of formation + Delta-G solvation = 28.337760 kcal Electronic energy + Delta-G solvation = -25379.043034 eV Core-core repulsion = 21910.223040 eV Total energy + Delta-G solvation = -3468.819994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98920 -38.76999 -37.32430 -34.50115 -33.04203 -32.16113 -31.59105 -29.37325 -28.25418 -27.19422 -26.15862 -24.45580 -24.05280 -23.19674 -20.60278 -20.20250 -19.06050 -18.31497 -17.93769 -17.00980 -16.13896 -16.01080 -15.36563 -14.90133 -14.70907 -14.30563 -14.26985 -13.83506 -13.75443 -13.53589 -13.07112 -12.90345 -12.76998 -12.61447 -12.38356 -12.25924 -11.99838 -11.88824 -11.74346 -11.61175 -11.53502 -11.14831 -11.10027 -10.95326 -10.85176 -10.55771 -10.17310 -10.12420 -9.90917 -9.61607 -9.54405 -8.74578 -8.68397 -8.40139 -8.19961 -6.90420 -5.71305 -3.13443 0.54940 1.51366 1.95054 2.33875 3.17621 3.34904 3.36383 3.42834 3.44697 4.44583 4.59934 4.64991 4.85675 4.92015 5.08746 5.14918 5.25073 5.30135 5.38303 5.41760 5.45594 5.46805 5.48164 5.61731 5.63900 5.68907 5.71727 5.74374 5.84819 5.94642 6.00825 6.10892 6.25472 6.27444 6.33517 6.42749 6.53725 6.55041 6.67474 6.98340 7.38958 7.57622 7.61582 7.79438 8.28917 8.32114 9.15934 9.76239 10.40287 11.32286 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.003153 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.550596 B = 8877.971211 C = 9454.519339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.125 4.125 4 C -0.050 4.050 5 C -0.265 4.265 6 C 0.586 3.414 7 O -0.542 6.542 8 N -0.588 5.588 9 C 0.054 3.946 10 C 0.127 3.873 11 H 0.103 0.897 12 C -0.155 4.155 13 C 0.143 3.857 14 N -0.603 5.603 15 C -0.222 4.222 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.126 3.874 24 S 0.236 5.764 25 C -0.232 4.232 26 C -0.081 4.081 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.022 0.978 40 H 0.252 0.748 41 H 0.035 0.965 42 H 0.028 0.972 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 -19.256 5.424 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.137 4.137 4 C -0.083 4.083 5 C -0.386 4.386 6 C 0.374 3.626 7 O -0.422 6.422 8 N -0.319 5.319 9 C -0.091 4.091 10 C 0.024 3.976 11 H 0.121 0.879 12 C -0.194 4.194 13 C 0.018 3.982 14 N -0.330 5.330 15 C -0.350 4.350 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.217 1.217 23 C -0.001 4.001 24 S 0.507 5.493 25 C -0.351 4.351 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.504 -17.970 5.852 19.221 hybrid contribution -0.809 -0.406 -0.601 1.087 sum -4.313 -18.376 5.251 19.592 Atomic orbital electron populations 1.21728 0.94992 1.01419 1.02249 1.20209 0.95852 0.91590 1.02525 1.18549 1.05398 0.98277 0.91471 1.20503 0.96366 0.91892 0.99562 1.24514 1.16712 1.00146 0.97192 1.17035 0.77346 0.81272 0.86967 1.90779 1.53750 1.77624 1.20012 1.47645 1.66326 1.08083 1.09815 1.22394 1.00537 1.04775 0.81384 1.22202 0.95764 0.89021 0.90644 0.87933 1.23366 0.95246 0.99165 1.01636 1.22155 0.89492 0.94651 0.91877 1.44568 1.23131 1.09876 1.55430 1.19122 1.03822 0.87487 1.24595 0.90415 1.24774 0.97466 0.98544 0.99750 1.69797 1.17665 1.33466 1.36087 0.86005 0.78233 0.83880 0.77414 1.20552 1.21764 1.21748 1.21661 0.94899 0.87815 0.95707 1.83890 1.60438 1.06267 0.98658 1.24767 1.07984 1.02419 0.99926 1.20314 1.02211 1.01118 0.90228 0.92695 0.92495 0.92554 0.91148 0.91253 0.83483 0.91849 0.85689 0.91774 0.91947 0.90787 0.87486 0.96044 0.93746 0.94693 0.95432 0.91528 0.90752 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.06 -0.53 5.83 -27.88 -0.16 -0.70 16 3 C -0.12 -1.40 5.04 -106.45 -0.54 -1.93 16 4 C -0.05 -0.66 9.79 -40.44 -0.40 -1.06 16 5 C -0.27 -3.92 6.24 -36.79 -0.23 -4.15 16 6 C 0.59 10.32 7.64 -12.90 -0.10 10.23 16 7 O -0.54 -10.93 16.22 5.19 0.08 -10.84 16 8 N -0.59 -10.25 2.82 -173.42 -0.49 -10.74 16 9 C 0.05 0.86 7.20 59.85 0.43 1.29 16 10 C 0.13 2.37 3.58 -66.10 -0.24 2.14 16 11 H 0.10 1.93 6.99 -51.93 -0.36 1.56 16 12 C -0.15 -2.93 6.53 -24.59 -0.16 -3.09 16 13 C 0.14 3.24 4.99 -2.53 -0.01 3.23 16 14 N -0.60 -14.69 2.98 -170.07 -0.51 -15.20 16 15 C -0.22 -5.95 10.27 -15.06 -0.15 -6.10 16 16 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -25.65 10.09 55.49 0.56 -25.09 16 19 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.13 2.64 6.30 -3.06 -0.02 2.62 16 24 S 0.24 2.83 17.83 -107.50 -1.92 0.91 16 25 C -0.23 -2.49 6.28 -35.86 -0.23 -2.71 16 26 C -0.08 -0.63 9.44 36.00 0.34 -0.29 16 27 H 0.05 0.42 7.43 -51.93 -0.39 0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.07 0.52 7.45 -51.93 -0.39 0.13 16 32 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.06 0.92 7.79 -51.93 -0.40 0.52 16 34 H 0.13 2.37 4.72 -51.93 -0.25 2.13 16 35 H 0.06 0.92 4.57 -22.93 -0.10 0.82 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.11 2.80 5.87 -51.93 -0.30 2.49 16 39 H 0.02 0.50 5.54 -51.93 -0.29 0.21 16 40 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 43 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 44 H 0.07 0.51 7.43 -51.93 -0.39 0.13 16 45 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -30.06 360.19 -9.67 -39.73 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.62 Total: 1.01 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.19 Total: -1.66 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.44 Total: -51.03 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.92 Total: 0.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.06 -9.67 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033647502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.069 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds