Wall clock time and date at job start Tue Mar 31 2020 13:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47074 * 2 1 4 4 C 1.37467 * 122.45371 * 265.02156 * 3 2 1 5 5 C 1.36648 * 113.30104 * 179.74502 * 4 3 2 6 6 C 1.46579 * 125.46023 * 180.25295 * 5 4 3 7 7 O 1.21701 * 119.99983 * 351.50785 * 6 5 4 8 8 N 1.34778 * 120.00031 * 171.50929 * 6 5 4 9 9 C 1.46501 * 119.99705 * 0.31601 * 8 6 5 10 10 C 1.46493 * 120.00043 * 180.32136 * 8 6 5 11 11 H 1.08999 * 110.64340 * 358.30916 * 10 8 6 12 12 C 1.55154 * 110.71956 * 234.97453 * 10 8 6 13 13 C 1.54905 * 101.58327 * 277.13834 * 12 10 8 14 14 N 1.47426 * 104.83271 * 322.99037 * 13 12 10 15 15 C 1.36934 * 125.65057 * 204.16227 * 14 13 12 16 16 H 1.08004 * 120.00504 * 179.97438 * 15 14 13 17 17 C 1.38815 * 119.99914 * 359.95877 * 15 14 13 18 18 N 1.31615 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99719 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47278 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46640 * 120.00222 * 19 17 15 22 22 H 1.48501 * 109.47071 * 239.99893 * 19 17 15 23 23 C 1.47022 * 108.70157 * 24.12974 * 14 13 12 24 24 S 1.75833 * 109.07881 * 0.23466 * 5 4 3 25 25 C 1.33825 * 122.44678 * 85.21869 * 3 2 1 26 26 C 1.50699 * 124.52252 * 0.02562 * 25 3 2 27 27 H 1.09002 * 109.46938 * 300.00140 * 1 2 3 28 28 H 1.09003 * 109.46747 * 59.99654 * 1 2 3 29 29 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47218 * 240.00327 * 2 1 3 31 31 H 1.08998 * 109.47137 * 120.00081 * 2 1 3 32 32 H 1.08000 * 123.34869 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.46629 * 83.64341 * 9 8 6 34 34 H 1.08997 * 109.46829 * 203.63980 * 9 8 6 35 35 H 1.08992 * 109.47731 * 323.64620 * 9 8 6 36 36 H 1.08998 * 111.00633 * 35.21237 * 12 10 8 37 37 H 1.09007 * 111.00408 * 159.06084 * 12 10 8 38 38 H 1.09003 * 110.36988 * 204.15472 * 13 12 10 39 39 H 1.09002 * 110.46130 * 81.87336 * 13 12 10 40 40 H 0.97003 * 120.00201 * 180.02562 * 18 17 15 41 41 H 1.09008 * 109.87959 * 239.52146 * 23 14 13 42 42 H 1.08999 * 109.88834 * 118.36025 * 23 14 13 43 43 H 1.09001 * 109.46996 * 180.24153 * 26 25 3 44 44 H 1.08998 * 109.47493 * 300.24506 * 26 25 3 45 45 H 1.09004 * 109.46969 * 60.24444 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3731 2.0828 -1.1556 5 6 2.7998 3.3629 -0.9396 6 6 3.2220 4.3054 -1.9797 7 8 3.3581 3.9243 -3.1274 8 7 3.4596 5.5942 -1.6649 9 6 3.3026 6.0514 -0.2820 10 6 3.8749 6.5378 -2.7057 11 1 3.9719 6.0321 -3.6664 12 6 5.2024 7.2386 -2.3134 13 6 4.6936 8.3754 -1.3924 14 7 3.4264 8.8171 -2.0028 15 6 2.8537 10.0513 -1.8483 16 1 1.9192 10.2784 -2.3399 17 6 3.4739 11.0105 -1.0595 18 7 4.6127 10.7338 -0.4605 19 14 2.6929 12.6943 -0.8493 20 1 1.4254 12.7519 -1.6208 21 1 2.4078 12.9317 0.5886 22 1 3.6244 13.7378 -1.3481 23 6 2.8799 7.7133 -2.8055 24 16 2.7605 3.6982 0.7860 25 6 2.1829 2.1292 1.1254 26 6 1.8779 1.6117 2.5075 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3058 1.6371 -2.1370 33 1 4.2121 5.8339 0.2780 34 1 3.1187 7.1258 -0.2732 35 1 2.4603 5.5349 0.1781 36 1 5.8573 6.5583 -1.7690 37 1 5.7052 7.6430 -3.1920 38 1 5.4107 9.1961 -1.3711 39 1 4.5183 7.9995 -0.3844 40 1 5.0460 11.4040 0.0911 41 1 2.7782 8.0257 -3.8449 42 1 1.9097 7.4123 -2.4102 43 1 2.0837 2.3913 3.2410 44 1 0.8274 1.3267 2.5652 45 1 2.5021 0.7427 2.7160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033647502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:24 Heat of formation + Delta-G solvation = 12.678891 kcal Electronic energy + Delta-G solvation = -25379.722053 eV Core-core repulsion = 21910.223040 eV Total energy + Delta-G solvation = -3469.499014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38729 -39.79748 -38.83716 -36.09640 -34.25686 -33.60516 -32.38248 -31.15210 -29.83939 -28.24387 -27.64528 -26.20762 -24.79683 -24.33279 -22.09203 -21.79329 -20.38288 -19.35951 -19.15092 -18.89490 -17.57908 -17.05001 -16.69977 -16.66468 -16.03540 -15.61020 -15.39998 -15.12501 -14.78189 -14.50562 -14.40616 -14.10807 -13.97548 -13.72265 -13.58282 -13.52077 -13.37879 -13.17696 -12.98551 -12.81680 -12.80539 -12.64573 -12.41667 -12.37007 -12.05731 -11.97870 -11.84121 -11.76695 -11.43919 -11.25486 -10.99425 -10.67127 -9.96404 -9.45437 -9.27216 -8.87922 -7.75844 -5.20012 -0.47542 0.51662 0.99955 1.33790 1.48941 1.50111 1.59700 1.82862 2.10257 2.50540 3.34812 3.41403 3.69238 3.82795 3.88662 3.96055 4.01662 4.10893 4.19853 4.27544 4.40966 4.42293 4.53907 4.60203 4.63192 4.65534 4.71335 4.75454 4.78688 4.86904 4.96328 4.98892 4.99209 5.05890 5.11497 5.16478 5.35031 5.43167 5.48343 5.51795 5.59386 5.63545 5.82528 6.25155 6.32115 6.95199 7.12604 7.77255 8.41155 9.25473 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.003153 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.550596 B = 8877.971211 C = 9454.519339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.044 4.044 5 C -0.305 4.305 6 C 0.585 3.415 7 O -0.576 6.576 8 N -0.590 5.590 9 C 0.061 3.939 10 C 0.137 3.863 11 H 0.105 0.895 12 C -0.139 4.139 13 C 0.149 3.851 14 N -0.618 5.618 15 C -0.237 4.237 16 H 0.076 0.924 17 C -0.058 4.058 18 N -0.943 5.943 19 Si 0.976 3.024 20 H -0.272 1.272 21 H -0.291 1.291 22 H -0.293 1.293 23 C 0.128 3.872 24 S 0.249 5.751 25 C -0.216 4.216 26 C -0.084 4.084 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.018 0.982 40 H 0.248 0.752 41 H 0.035 0.965 42 H 0.023 0.977 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 -21.123 6.938 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.079 4.079 5 C -0.425 4.425 6 C 0.376 3.624 7 O -0.459 6.459 8 N -0.321 5.321 9 C -0.084 4.084 10 C 0.034 3.966 11 H 0.123 0.877 12 C -0.179 4.179 13 C 0.025 3.975 14 N -0.345 5.345 15 C -0.366 4.366 16 H 0.094 0.906 17 C -0.252 4.252 18 N -0.592 5.592 19 Si 0.805 3.195 20 H -0.196 1.196 21 H -0.218 1.218 22 H -0.220 1.220 23 C 0.002 3.998 24 S 0.520 5.480 25 C -0.335 4.335 26 C -0.142 4.142 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.161 0.839 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.036 0.964 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.321 -19.846 7.370 21.607 hybrid contribution -0.611 0.063 -1.018 1.189 sum -4.931 -19.783 6.352 21.355 Atomic orbital electron populations 1.21719 0.94410 1.02388 1.01695 1.20277 0.96254 0.89872 1.03573 1.18769 1.05581 0.99665 0.90679 1.20702 0.95272 0.91515 1.00367 1.24309 1.19627 1.00351 0.98217 1.17388 0.76494 0.81352 0.87212 1.90744 1.55352 1.78179 1.21600 1.47647 1.66407 1.08040 1.09984 1.22327 1.02109 1.02972 0.80949 1.21970 0.94794 0.88487 0.91386 0.87742 1.23217 0.95550 0.98019 1.01079 1.21951 0.88286 0.94604 0.92660 1.44745 1.23815 1.10033 1.55885 1.19394 1.03970 0.88691 1.24504 0.90566 1.25506 0.98113 1.01661 0.99870 1.70018 1.18590 1.34108 1.36503 0.85042 0.77586 0.79749 0.77098 1.19625 1.21763 1.22045 1.21694 0.95210 0.87837 0.95056 1.83662 1.60379 1.07544 0.96415 1.25153 1.05709 1.01186 1.01409 1.20493 1.03473 1.02006 0.88214 0.92443 0.93857 0.90862 0.90897 0.89466 0.83909 0.90404 0.88709 0.90054 0.90145 0.90379 0.90841 0.96382 0.94235 0.94660 0.95864 0.90638 0.89262 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 71.98 0.71 -1.16 16 2 C -0.06 -0.86 5.83 29.85 0.17 -0.69 16 3 C -0.14 -2.73 5.04 -21.05 -0.11 -2.84 16 4 C -0.04 -1.13 9.79 21.72 0.21 -0.92 16 5 C -0.31 -8.84 6.24 24.08 0.15 -8.69 16 6 C 0.59 20.67 7.64 86.42 0.66 21.33 16 7 O -0.58 -23.55 16.22 -4.35 -0.07 -23.62 16 8 N -0.59 -20.57 2.82 -820.80 -2.32 -22.89 16 9 C 0.06 1.92 7.20 127.77 0.92 2.84 16 10 C 0.14 5.17 3.58 46.18 0.17 5.33 16 11 H 0.10 3.94 6.99 -2.39 -0.02 3.92 16 12 C -0.14 -5.26 6.53 31.98 0.21 -5.05 16 13 C 0.15 6.93 4.99 86.85 0.43 7.36 16 14 N -0.62 -30.68 2.98 -691.98 -2.06 -32.73 16 15 C -0.24 -12.88 10.27 84.03 0.86 -12.01 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 17 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 18 N -0.94 -53.50 10.09 21.65 0.22 -53.28 16 19 Si 0.98 44.51 29.55 68.60 2.03 46.54 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 23 C 0.13 5.46 6.30 86.73 0.55 6.00 16 24 S 0.25 5.53 17.83 -56.49 -1.01 4.53 16 25 C -0.22 -4.01 6.28 24.68 0.15 -3.86 16 26 C -0.08 -0.97 9.44 71.24 0.67 -0.30 16 27 H 0.06 0.71 7.43 -2.39 -0.02 0.69 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.09 0.95 7.45 -2.39 -0.02 0.93 16 32 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 34 H 0.09 3.65 4.72 -2.39 -0.01 3.64 16 35 H 0.08 2.28 4.57 -20.84 -0.10 2.18 16 36 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16 39 H 0.02 0.86 5.54 -2.39 -0.01 0.85 16 40 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 41 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.02 1.01 8.04 -2.39 -0.02 0.99 16 43 H 0.07 0.78 8.11 -2.39 -0.02 0.76 16 44 H 0.09 0.85 7.43 -2.39 -0.02 0.83 16 45 H 0.09 0.83 7.93 -2.39 -0.02 0.81 16 Total: -1.00 -65.37 360.19 3.93 -61.44 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.91 Total: 15.40 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.23 Total: 4.63 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -4.16 Total: -108.90 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.07 Total: -23.62 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.01 Total: 4.53 kcal Total: -65.37 3.93 -61.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033647502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.119 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds