Wall clock time and date at job start Tue Mar 31 2020 13:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47232 * 2 1 4 4 C 1.37482 * 122.44538 * 265.23083 * 3 2 1 5 5 C 1.36644 * 113.29220 * 180.27295 * 4 3 2 6 6 C 1.46586 * 125.45652 * 179.71463 * 5 4 3 7 7 O 1.21694 * 120.00171 * 351.39544 * 6 5 4 8 8 N 1.34778 * 119.99811 * 171.40107 * 6 5 4 9 9 C 1.46502 * 120.00136 * 0.11910 * 8 6 5 10 10 C 1.46499 * 119.99724 * 180.12774 * 8 6 5 11 11 H 1.09001 * 110.89073 * 356.11442 * 10 8 6 12 12 C 1.55161 * 111.00427 * 119.99653 * 10 8 6 13 13 C 1.54323 * 102.93950 * 153.57447 * 12 10 8 14 14 N 1.47018 * 107.27430 * 337.80651 * 13 12 10 15 15 C 1.36944 * 125.65203 * 178.92065 * 14 13 12 16 16 H 1.07995 * 120.00207 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.99652 * 0.02584 * 15 14 13 18 18 N 1.31618 * 120.00131 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46881 * 89.99738 * 19 17 15 21 21 H 1.48492 * 109.47084 * 209.99838 * 19 17 15 22 22 H 1.48497 * 109.46803 * 329.99865 * 19 17 15 23 23 C 1.47421 * 108.70359 * 358.94277 * 14 13 12 24 24 S 1.75832 * 109.08654 * 359.74212 * 5 4 3 25 25 C 1.33811 * 122.45473 * 85.00100 * 3 2 1 26 26 C 1.50703 * 124.51952 * 0.02562 * 25 3 2 27 27 H 1.09002 * 109.47512 * 300.00068 * 1 2 3 28 28 H 1.09002 * 109.47436 * 60.00226 * 1 2 3 29 29 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46792 * 239.99953 * 2 1 3 31 31 H 1.09002 * 109.47436 * 119.99774 * 2 1 3 32 32 H 1.07995 * 123.35589 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.46545 * 83.46334 * 9 8 6 34 34 H 1.08997 * 109.46865 * 203.45463 * 9 8 6 35 35 H 1.08990 * 109.47238 * 323.46522 * 9 8 6 36 36 H 1.08998 * 110.72016 * 271.93325 * 12 10 8 37 37 H 1.09002 * 110.71893 * 35.03726 * 12 10 8 38 38 H 1.08997 * 109.88446 * 97.22579 * 13 12 10 39 39 H 1.09002 * 109.88549 * 218.23414 * 13 12 10 40 40 H 0.97007 * 120.00229 * 179.97438 * 18 17 15 41 41 H 1.09008 * 110.36700 * 265.29193 * 23 14 13 42 42 H 1.09003 * 110.37010 * 142.96984 * 23 14 13 43 43 H 1.09000 * 109.47420 * 179.73025 * 26 25 3 44 44 H 1.09005 * 109.47155 * 299.72359 * 26 25 3 45 45 H 1.09001 * 109.47015 * 59.72181 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3691 2.0840 -1.1562 5 6 2.8074 3.3599 -0.9391 6 6 3.2393 4.2991 -1.9784 7 8 3.3748 3.9168 -3.1258 8 7 3.4865 5.5860 -1.6633 9 6 3.3260 6.0456 -0.2815 10 6 3.9155 6.5252 -2.7025 11 1 4.0518 6.0144 -3.6558 12 6 2.9110 7.6998 -2.8396 13 6 3.7889 8.8427 -3.3914 14 7 5.1823 8.5309 -3.0413 15 6 6.2760 9.2874 -3.3682 16 1 7.2624 8.9708 -3.0632 17 6 6.1166 10.4613 -4.0917 18 7 4.9145 10.8469 -4.4639 19 14 7.6084 11.4931 -4.5384 20 1 8.1422 11.0491 -5.8510 21 1 7.2147 12.9224 -4.6219 22 1 8.6542 11.3277 -3.4972 23 6 5.2074 7.2685 -2.2803 24 16 2.7710 3.6945 0.7867 25 6 2.1789 2.1306 1.1248 26 6 1.8690 1.6150 2.5066 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2992 1.6392 -2.1378 33 1 4.2293 5.8176 0.2844 34 1 3.1548 7.1220 -0.2743 35 1 2.4749 5.5391 0.1733 36 1 2.1177 7.4486 -3.5437 37 1 2.4932 7.9652 -1.8685 38 1 3.6832 8.9015 -4.4747 39 1 3.4933 9.7891 -2.9385 40 1 4.8030 11.6675 -4.9692 41 1 5.1957 7.4709 -1.2092 42 1 6.0868 6.6822 -2.5468 43 1 2.0808 2.3924 3.2406 44 1 0.8161 1.3387 2.5636 45 1 2.4858 0.7407 2.7149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033647525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:29 Heat of formation + Delta-G solvation = 21.949068 kcal Electronic energy + Delta-G solvation = -24931.461182 eV Core-core repulsion = 21462.364154 eV Total energy + Delta-G solvation = -3469.097029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98941 -38.81326 -37.25052 -34.90098 -33.11561 -32.18163 -31.69269 -29.33617 -28.05329 -27.26874 -26.48615 -24.54445 -24.13701 -23.13663 -20.55886 -20.13588 -19.25071 -18.41947 -18.08903 -16.98817 -16.17751 -16.13338 -15.43923 -14.89732 -14.61715 -14.38596 -14.29700 -14.09734 -13.68768 -13.59646 -13.17034 -12.95621 -12.93183 -12.77903 -12.51612 -12.44453 -12.19350 -12.05849 -11.84630 -11.74937 -11.62999 -11.21664 -10.95846 -10.87512 -10.79935 -10.48493 -10.31635 -10.10633 -9.88237 -9.78204 -9.69003 -8.82814 -8.62810 -8.50473 -8.31399 -6.86130 -5.72486 -3.06894 0.44095 1.38293 1.81139 2.24508 3.03967 3.25752 3.40675 3.45588 3.47308 4.47767 4.50317 4.55211 4.76812 4.82492 4.97005 5.01083 5.07284 5.20392 5.23202 5.38226 5.39785 5.40837 5.46191 5.53459 5.57293 5.61446 5.63455 5.66796 5.68806 5.82342 5.85420 5.93854 6.16740 6.18257 6.27163 6.33411 6.48228 6.54504 6.65854 6.91850 7.47812 7.54108 7.58972 7.80841 8.21151 8.25457 9.19878 9.79731 10.44470 11.39070 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033715 B = 0.002587 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.301218 B =10818.779521 C =11079.534440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.123 4.123 4 C -0.048 4.048 5 C -0.264 4.264 6 C 0.586 3.414 7 O -0.532 6.532 8 N -0.595 5.595 9 C 0.062 3.938 10 C 0.124 3.876 11 H 0.109 0.891 12 C -0.153 4.153 13 C 0.180 3.820 14 N -0.602 5.602 15 C -0.229 4.229 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.132 3.868 24 S 0.225 5.775 25 C -0.228 4.228 26 C -0.081 4.081 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.253 0.747 41 H 0.023 0.977 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.532 -19.035 15.177 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.135 4.135 4 C -0.081 4.081 5 C -0.384 4.384 6 C 0.374 3.626 7 O -0.411 6.411 8 N -0.327 5.327 9 C -0.083 4.083 10 C 0.021 3.979 11 H 0.127 0.873 12 C -0.192 4.192 13 C 0.055 3.945 14 N -0.329 5.329 15 C -0.357 4.357 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.004 3.996 24 S 0.496 5.504 25 C -0.347 4.347 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.034 -17.753 15.378 25.164 hybrid contribution 0.320 -0.634 -1.035 1.256 sum -8.714 -18.387 14.343 24.894 Atomic orbital electron populations 1.21728 0.94930 1.01511 1.02217 1.20223 0.95890 0.91506 1.02659 1.18574 1.05182 0.98261 0.91443 1.20553 0.96035 0.91866 0.99683 1.24521 1.16477 1.00403 0.96977 1.17003 0.77444 0.81161 0.87000 1.90818 1.53067 1.77232 1.19985 1.47649 1.66597 1.08809 1.09604 1.21994 1.01343 1.02642 0.82329 1.22530 0.95726 0.88680 0.90977 0.87279 1.23265 0.98282 0.96780 1.00899 1.21146 0.81838 0.92689 0.98873 1.44383 1.03450 1.21793 1.63304 1.19055 0.85968 1.01487 1.29192 0.90346 1.24815 0.96921 0.98229 1.00411 1.69957 1.19738 1.24424 1.42800 0.86092 0.81608 0.79527 0.78368 1.21540 1.21661 1.20680 1.21753 0.94499 0.88293 0.95038 1.83618 1.60540 1.07431 0.98855 1.24675 1.07931 1.02111 0.99973 1.20322 1.02273 1.01166 0.90130 0.92722 0.92466 0.92487 0.91033 0.91184 0.83334 0.91486 0.88373 0.91092 0.91776 0.92103 0.93235 0.93576 0.93683 0.95982 0.93951 0.91553 0.90687 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.06 -0.49 5.83 -27.89 -0.16 -0.65 16 3 C -0.12 -1.24 5.04 -106.45 -0.54 -1.77 16 4 C -0.05 -0.59 9.79 -40.43 -0.40 -0.99 16 5 C -0.26 -3.55 6.23 -36.79 -0.23 -3.78 16 6 C 0.59 9.82 7.64 -12.89 -0.10 9.72 16 7 O -0.53 -10.76 16.23 5.19 0.08 -10.68 16 8 N -0.60 -9.48 2.91 -173.05 -0.50 -9.98 16 9 C 0.06 0.76 7.51 59.85 0.45 1.20 16 10 C 0.12 2.35 3.44 -65.78 -0.23 2.13 16 11 H 0.11 2.31 7.02 -51.93 -0.36 1.95 16 12 C -0.15 -2.91 6.49 -24.89 -0.16 -3.07 16 13 C 0.18 4.35 5.37 -3.07 -0.02 4.34 16 14 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 15 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.07 10.31 55.49 0.57 -26.50 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.13 2.76 6.79 -2.53 -0.02 2.74 16 24 S 0.23 2.24 17.83 -107.50 -1.92 0.32 16 25 C -0.23 -2.12 6.28 -35.86 -0.23 -2.34 16 26 C -0.08 -0.52 9.45 36.01 0.34 -0.18 16 27 H 0.05 0.37 7.42 -51.93 -0.39 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.07 0.46 7.44 -51.93 -0.39 0.08 16 32 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.07 0.73 7.76 -51.93 -0.40 0.33 16 34 H 0.10 1.19 6.35 -51.93 -0.33 0.86 16 35 H 0.07 0.74 4.61 -23.25 -0.11 0.63 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.03 6.48 -51.93 -0.34 0.70 16 38 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 39 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.02 0.44 6.93 -51.92 -0.36 0.08 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 44 H 0.07 0.42 7.42 -51.93 -0.39 0.03 16 45 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -32.50 364.27 -9.78 -42.28 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.74 Total: -1.89 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.16 Total: -0.15 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.51 Total: -52.50 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.92 Total: 0.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.50 -9.78 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033647525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.225 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds