Wall clock time and date at job start Tue Mar 31 2020 13:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47232 * 2 1 4 4 C 1.37482 * 122.44538 * 265.23083 * 3 2 1 5 5 C 1.36644 * 113.29220 * 180.27295 * 4 3 2 6 6 C 1.46586 * 125.45652 * 179.71463 * 5 4 3 7 7 O 1.21694 * 120.00171 * 351.39544 * 6 5 4 8 8 N 1.34778 * 119.99811 * 171.40107 * 6 5 4 9 9 C 1.46502 * 120.00136 * 0.11910 * 8 6 5 10 10 C 1.46499 * 119.99724 * 180.12774 * 8 6 5 11 11 H 1.09001 * 110.89073 * 356.11442 * 10 8 6 12 12 C 1.55161 * 111.00427 * 119.99653 * 10 8 6 13 13 C 1.54323 * 102.93950 * 153.57447 * 12 10 8 14 14 N 1.47018 * 107.27430 * 337.80651 * 13 12 10 15 15 C 1.36944 * 125.65203 * 178.92065 * 14 13 12 16 16 H 1.07995 * 120.00207 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.99652 * 0.02584 * 15 14 13 18 18 N 1.31618 * 120.00131 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46881 * 89.99738 * 19 17 15 21 21 H 1.48492 * 109.47084 * 209.99838 * 19 17 15 22 22 H 1.48497 * 109.46803 * 329.99865 * 19 17 15 23 23 C 1.47421 * 108.70359 * 358.94277 * 14 13 12 24 24 S 1.75832 * 109.08654 * 359.74212 * 5 4 3 25 25 C 1.33811 * 122.45473 * 85.00100 * 3 2 1 26 26 C 1.50703 * 124.51952 * 0.02562 * 25 3 2 27 27 H 1.09002 * 109.47512 * 300.00068 * 1 2 3 28 28 H 1.09002 * 109.47436 * 60.00226 * 1 2 3 29 29 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46792 * 239.99953 * 2 1 3 31 31 H 1.09002 * 109.47436 * 119.99774 * 2 1 3 32 32 H 1.07995 * 123.35589 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.46545 * 83.46334 * 9 8 6 34 34 H 1.08997 * 109.46865 * 203.45463 * 9 8 6 35 35 H 1.08990 * 109.47238 * 323.46522 * 9 8 6 36 36 H 1.08998 * 110.72016 * 271.93325 * 12 10 8 37 37 H 1.09002 * 110.71893 * 35.03726 * 12 10 8 38 38 H 1.08997 * 109.88446 * 97.22579 * 13 12 10 39 39 H 1.09002 * 109.88549 * 218.23414 * 13 12 10 40 40 H 0.97007 * 120.00229 * 179.97438 * 18 17 15 41 41 H 1.09008 * 110.36700 * 265.29193 * 23 14 13 42 42 H 1.09003 * 110.37010 * 142.96984 * 23 14 13 43 43 H 1.09000 * 109.47420 * 179.73025 * 26 25 3 44 44 H 1.09005 * 109.47155 * 299.72359 * 26 25 3 45 45 H 1.09001 * 109.47015 * 59.72181 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3691 2.0840 -1.1562 5 6 2.8074 3.3599 -0.9391 6 6 3.2393 4.2991 -1.9784 7 8 3.3748 3.9168 -3.1258 8 7 3.4865 5.5860 -1.6633 9 6 3.3260 6.0456 -0.2815 10 6 3.9155 6.5252 -2.7025 11 1 4.0518 6.0144 -3.6558 12 6 2.9110 7.6998 -2.8396 13 6 3.7889 8.8427 -3.3914 14 7 5.1823 8.5309 -3.0413 15 6 6.2760 9.2874 -3.3682 16 1 7.2624 8.9708 -3.0632 17 6 6.1166 10.4613 -4.0917 18 7 4.9145 10.8469 -4.4639 19 14 7.6084 11.4931 -4.5384 20 1 8.1422 11.0491 -5.8510 21 1 7.2147 12.9224 -4.6219 22 1 8.6542 11.3277 -3.4972 23 6 5.2074 7.2685 -2.2803 24 16 2.7710 3.6945 0.7867 25 6 2.1789 2.1306 1.1248 26 6 1.8690 1.6150 2.5066 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2992 1.6392 -2.1378 33 1 4.2293 5.8176 0.2844 34 1 3.1548 7.1220 -0.2743 35 1 2.4749 5.5391 0.1733 36 1 2.1177 7.4486 -3.5437 37 1 2.4932 7.9652 -1.8685 38 1 3.6832 8.9015 -4.4747 39 1 3.4933 9.7891 -2.9385 40 1 4.8030 11.6675 -4.9692 41 1 5.1957 7.4709 -1.2092 42 1 6.0868 6.6822 -2.5468 43 1 2.0808 2.3924 3.2406 44 1 0.8161 1.3387 2.5636 45 1 2.4858 0.7407 2.7149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033647525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:29 Heat of formation + Delta-G solvation = 3.167983 kcal Electronic energy + Delta-G solvation = -24932.275591 eV Core-core repulsion = 21462.364154 eV Total energy + Delta-G solvation = -3469.911438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28804 -39.74008 -38.82765 -36.41130 -34.29222 -33.66566 -32.37987 -31.18154 -29.55930 -28.28865 -27.75799 -26.35013 -24.78313 -24.22717 -22.08342 -21.78533 -20.50284 -19.36617 -19.13414 -18.96292 -17.52417 -17.06371 -16.71141 -16.59670 -15.89629 -15.88918 -15.27094 -15.03738 -14.80991 -14.40994 -14.39208 -14.25091 -14.14501 -13.98324 -13.70612 -13.57823 -13.49894 -13.18763 -12.93247 -12.79953 -12.75569 -12.67233 -12.34135 -12.33595 -12.11396 -12.03515 -11.82517 -11.78226 -11.55693 -11.24743 -11.12045 -10.73688 -9.96015 -9.45351 -9.24547 -8.93388 -7.86885 -5.23938 -0.47721 0.51485 0.98896 1.33735 1.46026 1.48560 1.56889 1.77437 2.09840 2.49517 3.31745 3.42986 3.62877 3.85529 3.88863 3.94027 4.00314 4.09467 4.16739 4.20861 4.40991 4.43420 4.51527 4.54182 4.56696 4.64879 4.70133 4.72528 4.80042 4.83047 4.94596 4.98333 4.99921 5.06225 5.13546 5.17589 5.34174 5.40834 5.45354 5.49069 5.58962 5.60056 5.70913 6.15893 6.23643 6.96047 7.06950 7.72387 8.36198 9.23380 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033715 B = 0.002587 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.301218 B =10818.779521 C =11079.534440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.137 4.137 4 C -0.048 4.048 5 C -0.306 4.306 6 C 0.583 3.417 7 O -0.582 6.582 8 N -0.594 5.594 9 C 0.055 3.945 10 C 0.139 3.861 11 H 0.080 0.920 12 C -0.134 4.134 13 C 0.189 3.811 14 N -0.624 5.624 15 C -0.244 4.244 16 H 0.084 0.916 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.981 3.019 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.267 1.267 23 C 0.134 3.866 24 S 0.272 5.728 25 C -0.215 4.215 26 C -0.084 4.084 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.010 0.990 39 H 0.020 0.980 40 H 0.248 0.752 41 H 0.047 0.953 42 H 0.035 0.965 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 -20.452 18.583 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.148 4.148 4 C -0.083 4.083 5 C -0.426 4.426 6 C 0.373 3.627 7 O -0.464 6.464 8 N -0.324 5.324 9 C -0.089 4.089 10 C 0.035 3.965 11 H 0.099 0.901 12 C -0.173 4.173 13 C 0.064 3.936 14 N -0.351 5.351 15 C -0.373 4.373 16 H 0.101 0.899 17 C -0.258 4.258 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.191 1.191 23 C 0.007 3.993 24 S 0.543 5.457 25 C -0.334 4.334 26 C -0.142 4.142 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.154 0.846 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.331 -19.190 18.840 28.466 hybrid contribution 0.388 -0.308 -1.995 2.056 sum -8.943 -19.499 16.845 27.275 Atomic orbital electron populations 1.21715 0.94318 1.02350 1.01776 1.20277 0.96353 0.90100 1.03414 1.18724 1.05806 0.99517 0.90762 1.20692 0.95502 0.91813 1.00258 1.24265 1.19288 1.00344 0.98661 1.17478 0.76537 0.81517 0.87166 1.90779 1.55267 1.78104 1.22277 1.47595 1.66247 1.08182 1.10395 1.22283 1.03184 1.03146 0.80258 1.22019 0.94803 0.88764 0.90958 0.90134 1.23075 0.97438 0.94567 1.02260 1.20867 0.82552 0.93689 0.96498 1.44651 1.03422 1.23171 1.63839 1.19447 0.86990 1.01887 1.28971 0.89862 1.25682 0.99721 0.99606 1.00761 1.70173 1.21683 1.24574 1.43516 0.85041 0.78548 0.77403 0.78102 1.21547 1.21841 1.19120 1.21856 0.95222 0.86598 0.95601 1.83235 1.59605 1.07691 0.95213 1.25140 1.05506 1.01476 1.01265 1.20504 1.03434 1.02100 0.88190 0.92138 0.93904 0.91050 0.91310 0.89440 0.84580 0.89746 0.87925 0.89063 0.90975 0.89210 0.97191 0.96170 0.94254 0.93527 0.94677 0.90203 0.89270 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.89 71.98 0.71 -0.95 16 2 C -0.06 -0.82 5.83 29.85 0.17 -0.64 16 3 C -0.14 -2.48 5.04 -21.05 -0.11 -2.59 16 4 C -0.05 -1.17 9.79 21.72 0.21 -0.96 16 5 C -0.31 -8.01 6.23 24.08 0.15 -7.86 16 6 C 0.58 19.74 7.64 86.42 0.66 20.40 16 7 O -0.58 -24.67 16.23 -4.33 -0.07 -24.74 16 8 N -0.59 -18.52 2.91 -819.64 -2.38 -20.90 16 9 C 0.05 1.19 7.51 127.77 0.96 2.15 16 10 C 0.14 5.34 3.44 46.39 0.16 5.50 16 11 H 0.08 3.58 7.02 -2.39 -0.02 3.56 16 12 C -0.13 -5.11 6.49 31.78 0.21 -4.90 16 13 C 0.19 9.50 5.37 86.73 0.47 9.97 16 14 N -0.62 -32.65 3.39 -691.99 -2.35 -35.00 16 15 C -0.24 -13.87 10.28 84.03 0.86 -13.01 16 16 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 17 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 18 N -0.95 -57.68 10.31 21.65 0.22 -57.45 16 19 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 C 0.13 5.60 6.79 86.86 0.59 6.19 16 24 S 0.27 4.60 17.83 -56.49 -1.01 3.60 16 25 C -0.21 -3.27 6.28 24.68 0.15 -3.12 16 26 C -0.08 -0.70 9.45 71.24 0.67 -0.02 16 27 H 0.06 0.62 7.42 -2.39 -0.02 0.61 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.94 8.11 -2.38 -0.02 0.92 16 31 H 0.09 0.85 7.44 -2.39 -0.02 0.83 16 32 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.08 1.58 7.76 -2.39 -0.02 1.56 16 34 H 0.10 2.18 6.35 -2.39 -0.02 2.17 16 35 H 0.09 1.62 4.61 -20.63 -0.10 1.53 16 36 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.09 2.90 6.48 -2.39 -0.02 2.89 16 38 H 0.01 0.56 7.38 -2.39 -0.02 0.55 16 39 H 0.02 1.10 7.51 -2.39 -0.02 1.08 16 40 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 41 H 0.05 1.76 6.93 -2.38 -0.02 1.75 16 42 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 0.49 8.11 -2.39 -0.02 0.47 16 44 H 0.09 0.57 7.42 -2.38 -0.02 0.55 16 45 H 0.09 0.58 7.91 -2.39 -0.02 0.56 16 Total: -1.00 -73.81 364.27 3.68 -70.12 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.90 Total: 9.29 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.34 Total: 6.91 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -4.51 Total: -113.35 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.07 Total: -24.74 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.01 Total: 3.60 kcal Total: -73.81 3.68 -70.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033647525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.292 kcal (2) G-P(sol) polarization free energy of solvation -73.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds