Wall clock time and date at job start Tue Mar 31 2020 13:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 C 1.50697 * 109.47274 * 120.00131 * 2 1 3 5 5 C 1.37473 * 123.35018 * 305.16306 * 4 2 1 6 6 C 1.33816 * 115.10356 * 180.02562 * 5 4 2 7 7 S 1.70616 * 110.95351 * 359.72206 * 6 5 4 8 8 C 1.36642 * 123.35313 * 125.18180 * 4 2 1 9 9 C 1.46576 * 125.45802 * 359.97438 * 8 4 2 10 10 O 1.21697 * 120.00296 * 353.49351 * 9 8 4 11 11 N 1.34785 * 120.00130 * 173.48804 * 9 8 4 12 12 C 1.46499 * 119.99603 * 4.52335 * 11 9 8 13 13 C 1.46497 * 119.99972 * 184.51508 * 11 9 8 14 14 H 1.08998 * 110.64337 * 9.79162 * 13 11 9 15 15 C 1.55159 * 110.72006 * 246.64472 * 13 11 9 16 16 C 1.54915 * 101.57949 * 277.14104 * 15 13 11 17 17 N 1.47418 * 104.83265 * 322.98913 * 16 15 13 18 18 C 1.36942 * 125.64751 * 204.08968 * 17 16 15 19 19 H 1.07997 * 119.99689 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00043 * 0.03432 * 18 17 16 21 21 N 1.31625 * 119.99853 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47001 * 59.99808 * 22 20 18 24 24 H 1.48504 * 109.47418 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47462 * 300.00002 * 22 20 18 26 26 C 1.47019 * 108.70649 * 24.13117 * 17 16 15 27 27 H 1.09001 * 109.47221 * 300.00166 * 1 2 3 28 28 H 1.09003 * 109.46630 * 59.99810 * 1 2 3 29 29 H 1.08994 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47519 * 240.00286 * 2 1 3 31 31 H 1.09001 * 109.47226 * 59.99837 * 3 2 1 32 32 H 1.08999 * 109.47205 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47130 * 299.99879 * 3 2 1 34 34 H 1.08002 * 122.44795 * 359.97438 * 5 4 2 35 35 H 1.07998 * 124.52525 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47051 * 183.86932 * 12 11 9 37 37 H 1.09005 * 109.47082 * 303.85665 * 12 11 9 38 38 H 1.08997 * 109.47491 * 63.86215 * 12 11 9 39 39 H 1.08999 * 111.00387 * 159.06697 * 15 13 11 40 40 H 1.08994 * 111.03690 * 35.23155 * 15 13 11 41 41 H 1.08998 * 110.36711 * 81.83189 * 16 15 13 42 42 H 1.09005 * 110.36071 * 204.15194 * 16 15 13 43 43 H 0.97005 * 119.99575 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.88842 * 239.52203 * 26 17 16 45 45 H 1.08999 * 110.01055 * 118.42480 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6608 -0.3639 2.5078 6 6 2.2069 -1.1054 3.4788 7 16 3.2302 -2.3054 2.8277 8 6 2.9028 -1.7628 1.1875 9 6 3.4682 -2.3495 -0.0310 10 8 3.0796 -1.9773 -1.1225 11 7 4.4186 -3.3012 0.0575 12 6 4.8157 -3.8200 1.3687 13 6 5.0542 -3.8168 -1.1575 14 1 4.7762 -3.2140 -2.0220 15 6 4.6802 -5.3056 -1.3832 16 6 5.6994 -6.0249 -0.4647 17 7 6.9384 -5.2352 -0.5845 18 6 8.2060 -5.6990 -0.3534 19 1 9.0522 -5.0379 -0.4686 20 6 8.4032 -7.0188 0.0288 21 7 7.3718 -7.8243 0.1696 22 14 10.1323 -7.6517 0.3434 23 1 10.7562 -6.8644 1.4371 24 1 10.0719 -9.0825 0.7364 25 1 10.9434 -7.5112 -0.8925 26 6 6.5878 -3.8669 -0.9923 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 0.9787 0.4479 2.7128 35 1 2.0213 -0.9656 4.5335 36 1 5.6373 -4.5259 1.2465 37 1 5.1375 -2.9946 2.0038 38 1 3.9681 -4.3255 1.8315 39 1 4.8241 -5.5910 -2.4253 40 1 3.6575 -5.5050 -1.0635 41 1 5.3471 -6.0240 0.5668 42 1 5.8655 -7.0458 -0.8088 43 1 7.5096 -8.7465 0.4370 44 1 7.0707 -3.6270 -1.9396 45 1 6.9014 -3.1575 -0.2264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033678764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:40 Heat of formation + Delta-G solvation = 32.829349 kcal Electronic energy + Delta-G solvation = -25840.851690 eV Core-core repulsion = 22372.226466 eV Total energy + Delta-G solvation = -3468.625224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14363 -38.69439 -37.15846 -34.53887 -34.02546 -32.25461 -29.96042 -29.04345 -27.88811 -27.15375 -26.50730 -24.93604 -24.02362 -22.03376 -21.36693 -20.20921 -19.24727 -17.96852 -17.84725 -16.98624 -16.19301 -15.95324 -15.35969 -15.08675 -14.71532 -14.19674 -13.89800 -13.79880 -13.62664 -13.55350 -12.97964 -12.77440 -12.67577 -12.56163 -12.35770 -12.24551 -12.11307 -11.84133 -11.64910 -11.21556 -11.15529 -11.10449 -11.00304 -10.86262 -10.82127 -10.59212 -10.19597 -10.03393 -9.92602 -9.60474 -9.32844 -8.83164 -8.71822 -8.55458 -8.14137 -6.92468 -5.71813 -3.14718 0.56917 1.55616 1.99693 2.39006 3.19173 3.32745 3.36926 3.41865 3.42575 4.43802 4.67581 4.76313 4.93639 5.09680 5.21388 5.33442 5.35456 5.36356 5.40990 5.45510 5.58031 5.62029 5.63234 5.67320 5.68893 5.78132 5.85843 5.94263 6.06143 6.08056 6.14789 6.23517 6.26164 6.32107 6.35060 6.52560 6.55561 6.63380 6.70559 6.98146 7.39038 7.56237 7.63417 7.79123 8.28312 8.33444 9.14747 9.75098 10.38870 11.31448 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.003367 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.867666 B = 8313.765353 C = 8898.049257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.016 4.016 5 C -0.146 4.146 6 C -0.264 4.264 7 S 0.229 5.771 8 C -0.268 4.268 9 C 0.588 3.412 10 O -0.536 6.536 11 N -0.587 5.587 12 C 0.047 3.953 13 C 0.128 3.872 14 H 0.101 0.899 15 C -0.155 4.155 16 C 0.145 3.855 17 N -0.603 5.603 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.127 3.873 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.122 0.878 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.135 0.865 35 H 0.161 0.839 36 H 0.132 0.868 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.108 0.892 43 H 0.253 0.747 44 H 0.036 0.964 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.243 13.483 5.011 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.031 4.031 5 C -0.177 4.177 6 C -0.401 4.401 7 S 0.500 5.500 8 C -0.388 4.388 9 C 0.376 3.624 10 O -0.417 6.417 11 N -0.317 5.317 12 C -0.097 4.097 13 C 0.025 3.975 14 H 0.119 0.881 15 C -0.195 4.195 16 C 0.021 3.979 17 N -0.330 5.330 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.000 4.000 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.140 0.860 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.178 0.822 36 H 0.150 0.850 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.125 0.875 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.416 12.298 5.213 17.571 hybrid contribution -0.082 0.889 0.085 0.897 sum -11.498 13.187 5.298 18.280 Atomic orbital electron populations 1.21771 0.94578 1.01761 1.01348 1.20396 0.95557 0.95868 0.96967 1.21757 1.01196 0.95106 1.01337 1.19388 0.94196 0.93749 0.95787 1.19767 1.03948 1.02881 0.91125 1.25814 1.05536 1.04342 1.04455 1.83921 1.40574 1.29674 0.95848 1.24442 1.10689 1.06475 0.97211 1.16992 0.79061 0.79037 0.87264 1.90644 1.60851 1.62392 1.27790 1.47666 1.37845 1.38100 1.08115 1.22294 1.03351 1.00813 0.83252 1.22195 0.93152 0.96014 0.86160 0.88089 1.23388 1.00004 0.94338 1.01728 1.22097 0.82885 0.98186 0.94751 1.44567 1.03092 1.05021 1.80306 1.19024 0.82795 0.94409 1.39149 0.90480 1.24777 0.97597 0.96274 1.01735 1.69788 1.27623 1.05844 1.53693 0.86153 0.83475 0.77796 0.78048 1.21204 1.21585 1.21158 1.21623 0.91122 0.89229 0.98025 0.93086 0.92377 0.92716 0.86029 0.93111 0.92743 0.92344 0.84722 0.82173 0.85025 0.91904 0.91953 0.90932 0.92008 0.96308 0.87469 0.93611 0.94638 0.95341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.99 37.16 0.33 -1.09 16 2 C -0.07 -0.84 3.08 -91.77 -0.28 -1.13 16 3 C -0.14 -1.45 9.09 37.16 0.34 -1.11 16 4 C -0.02 -0.21 4.72 -105.48 -0.50 -0.70 16 5 C -0.15 -1.62 9.17 -41.41 -0.38 -2.00 16 6 C -0.26 -2.76 10.92 29.18 0.32 -2.45 16 7 S 0.23 2.71 17.61 -107.50 -1.89 0.82 16 8 C -0.27 -3.91 6.31 -36.80 -0.23 -4.14 16 9 C 0.59 10.01 7.62 -12.89 -0.10 9.92 16 10 O -0.54 -10.10 13.42 5.19 0.07 -10.03 16 11 N -0.59 -10.02 2.84 -173.41 -0.49 -10.51 16 12 C 0.05 0.75 7.20 59.85 0.43 1.18 16 13 C 0.13 2.35 3.53 -66.09 -0.23 2.11 16 14 H 0.10 1.84 7.08 -51.93 -0.37 1.47 16 15 C -0.16 -2.95 6.69 -24.58 -0.16 -3.12 16 16 C 0.15 3.31 5.01 -2.53 -0.01 3.29 16 17 N -0.60 -14.49 2.86 -170.07 -0.49 -14.98 16 18 C -0.23 -5.98 10.27 -15.06 -0.15 -6.13 16 19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -25.57 10.09 55.49 0.56 -25.01 16 22 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.13 2.58 6.17 -3.06 -0.02 2.56 16 27 H 0.05 0.46 7.51 -51.93 -0.39 0.07 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.12 1.85 4.95 -51.93 -0.26 1.59 16 31 H 0.05 0.47 8.00 -51.93 -0.42 0.06 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.14 1.23 7.68 -52.49 -0.40 0.83 16 35 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 2.51 4.21 -51.93 -0.22 2.29 16 37 H 0.06 0.90 5.98 -35.57 -0.21 0.69 16 38 H 0.06 0.90 6.84 -51.20 -0.35 0.55 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.44 5.89 -51.93 -0.31 0.14 16 42 H 0.11 2.81 5.88 -51.93 -0.31 2.50 16 43 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.58 7.73 -51.93 -0.40 0.18 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -28.90 354.89 -9.22 -38.12 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.56 Total: 3.08 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.75 Total: -3.12 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.42 Total: -50.50 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.89 Total: 0.82 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.90 -9.22 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033678764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.949 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds