Wall clock time and date at job start Tue Mar 31 2020 13:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 C 1.50697 * 109.47274 * 120.00131 * 2 1 3 5 5 C 1.37473 * 123.35018 * 305.16306 * 4 2 1 6 6 C 1.33816 * 115.10356 * 180.02562 * 5 4 2 7 7 S 1.70616 * 110.95351 * 359.72206 * 6 5 4 8 8 C 1.36642 * 123.35313 * 125.18180 * 4 2 1 9 9 C 1.46576 * 125.45802 * 359.97438 * 8 4 2 10 10 O 1.21697 * 120.00296 * 353.49351 * 9 8 4 11 11 N 1.34785 * 120.00130 * 173.48804 * 9 8 4 12 12 C 1.46499 * 119.99603 * 4.52335 * 11 9 8 13 13 C 1.46497 * 119.99972 * 184.51508 * 11 9 8 14 14 H 1.08998 * 110.64337 * 9.79162 * 13 11 9 15 15 C 1.55159 * 110.72006 * 246.64472 * 13 11 9 16 16 C 1.54915 * 101.57949 * 277.14104 * 15 13 11 17 17 N 1.47418 * 104.83265 * 322.98913 * 16 15 13 18 18 C 1.36942 * 125.64751 * 204.08968 * 17 16 15 19 19 H 1.07997 * 119.99689 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00043 * 0.03432 * 18 17 16 21 21 N 1.31625 * 119.99853 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47001 * 59.99808 * 22 20 18 24 24 H 1.48504 * 109.47418 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47462 * 300.00002 * 22 20 18 26 26 C 1.47019 * 108.70649 * 24.13117 * 17 16 15 27 27 H 1.09001 * 109.47221 * 300.00166 * 1 2 3 28 28 H 1.09003 * 109.46630 * 59.99810 * 1 2 3 29 29 H 1.08994 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47519 * 240.00286 * 2 1 3 31 31 H 1.09001 * 109.47226 * 59.99837 * 3 2 1 32 32 H 1.08999 * 109.47205 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47130 * 299.99879 * 3 2 1 34 34 H 1.08002 * 122.44795 * 359.97438 * 5 4 2 35 35 H 1.07998 * 124.52525 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47051 * 183.86932 * 12 11 9 37 37 H 1.09005 * 109.47082 * 303.85665 * 12 11 9 38 38 H 1.08997 * 109.47491 * 63.86215 * 12 11 9 39 39 H 1.08999 * 111.00387 * 159.06697 * 15 13 11 40 40 H 1.08994 * 111.03690 * 35.23155 * 15 13 11 41 41 H 1.08998 * 110.36711 * 81.83189 * 16 15 13 42 42 H 1.09005 * 110.36071 * 204.15194 * 16 15 13 43 43 H 0.97005 * 119.99575 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.88842 * 239.52203 * 26 17 16 45 45 H 1.08999 * 110.01055 * 118.42480 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6608 -0.3639 2.5078 6 6 2.2069 -1.1054 3.4788 7 16 3.2302 -2.3054 2.8277 8 6 2.9028 -1.7628 1.1875 9 6 3.4682 -2.3495 -0.0310 10 8 3.0796 -1.9773 -1.1225 11 7 4.4186 -3.3012 0.0575 12 6 4.8157 -3.8200 1.3687 13 6 5.0542 -3.8168 -1.1575 14 1 4.7762 -3.2140 -2.0220 15 6 4.6802 -5.3056 -1.3832 16 6 5.6994 -6.0249 -0.4647 17 7 6.9384 -5.2352 -0.5845 18 6 8.2060 -5.6990 -0.3534 19 1 9.0522 -5.0379 -0.4686 20 6 8.4032 -7.0188 0.0288 21 7 7.3718 -7.8243 0.1696 22 14 10.1323 -7.6517 0.3434 23 1 10.7562 -6.8644 1.4371 24 1 10.0719 -9.0825 0.7364 25 1 10.9434 -7.5112 -0.8925 26 6 6.5878 -3.8669 -0.9923 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 0.9787 0.4479 2.7128 35 1 2.0213 -0.9656 4.5335 36 1 5.6373 -4.5259 1.2465 37 1 5.1375 -2.9946 2.0038 38 1 3.9681 -4.3255 1.8315 39 1 4.8241 -5.5910 -2.4253 40 1 3.6575 -5.5050 -1.0635 41 1 5.3471 -6.0240 0.5668 42 1 5.8655 -7.0458 -0.8088 43 1 7.5096 -8.7465 0.4370 44 1 7.0707 -3.6270 -1.9396 45 1 6.9014 -3.1575 -0.2264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033678764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:40 Heat of formation + Delta-G solvation = 18.120509 kcal Electronic energy + Delta-G solvation = -25841.489513 eV Core-core repulsion = 22372.226466 eV Total energy + Delta-G solvation = -3469.263047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44961 -39.87231 -38.58013 -36.06440 -34.93216 -34.06858 -31.46917 -30.47253 -29.40766 -27.97016 -27.95959 -26.44740 -25.40841 -23.11611 -22.42963 -22.03591 -20.66338 -19.19799 -18.97078 -18.83227 -17.51767 -16.97148 -16.70639 -16.60180 -16.28169 -15.61996 -15.26225 -15.10154 -14.69985 -14.40457 -14.28866 -14.11938 -13.98826 -13.85303 -13.58064 -13.43745 -13.33055 -13.30471 -12.95683 -12.89872 -12.74768 -12.45404 -12.19696 -12.16010 -12.05124 -12.01582 -11.83609 -11.68548 -11.44520 -11.25518 -10.69656 -10.56945 -9.94024 -9.66974 -9.22543 -8.88344 -7.74912 -5.19639 -0.41730 0.58837 1.09023 1.42355 1.50458 1.52167 1.58568 1.87966 2.13845 2.51543 3.35815 3.48224 3.70299 3.83921 3.89279 3.97777 4.04844 4.09936 4.26846 4.32889 4.34453 4.39561 4.47895 4.61776 4.63897 4.74357 4.80069 4.81659 4.82631 4.89599 4.99036 4.99460 5.06780 5.09082 5.19110 5.25286 5.40496 5.44230 5.47740 5.54831 5.62154 5.68896 5.82518 6.31725 6.32513 7.03099 7.12452 7.77819 8.41575 9.26067 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.003367 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.867666 B = 8313.765353 C = 8898.049257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.131 4.131 4 C -0.010 4.010 5 C -0.155 4.155 6 C -0.242 4.242 7 S 0.236 5.764 8 C -0.311 4.311 9 C 0.586 3.414 10 O -0.562 6.562 11 N -0.591 5.591 12 C 0.056 3.944 13 C 0.140 3.860 14 H 0.105 0.895 15 C -0.141 4.141 16 C 0.154 3.846 17 N -0.617 5.617 18 C -0.239 4.239 19 H 0.079 0.921 20 C -0.059 4.059 21 N -0.944 5.944 22 Si 0.977 3.023 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.281 1.281 26 C 0.129 3.871 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.161 0.839 35 H 0.193 0.807 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.012 0.988 42 H 0.073 0.927 43 H 0.247 0.753 44 H 0.038 0.962 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.294 15.404 6.619 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C -0.189 4.189 4 C -0.026 4.026 5 C -0.185 4.185 6 C -0.380 4.380 7 S 0.507 5.493 8 C -0.430 4.430 9 C 0.377 3.623 10 O -0.445 6.445 11 N -0.322 5.322 12 C -0.088 4.088 13 C 0.036 3.964 14 H 0.123 0.877 15 C -0.181 4.181 16 C 0.029 3.971 17 N -0.344 5.344 18 C -0.367 4.367 19 H 0.097 0.903 20 C -0.252 4.252 21 N -0.593 5.593 22 Si 0.806 3.194 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.207 1.207 26 C 0.003 3.997 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.179 0.821 35 H 0.211 0.789 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.030 0.970 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.467 14.240 6.822 20.118 hybrid contribution 0.184 0.382 -0.370 0.563 sum -12.283 14.622 6.452 20.157 Atomic orbital electron populations 1.21734 0.92888 1.01437 1.02858 1.20386 0.96961 0.96473 0.95517 1.21720 1.00167 0.94168 1.02822 1.19700 0.93053 0.92865 0.97020 1.19966 1.04650 1.03868 0.90047 1.26168 1.03420 1.02413 1.05955 1.83781 1.41147 1.30231 0.94182 1.24315 1.12876 1.08266 0.97561 1.17339 0.78531 0.78474 0.87996 1.90635 1.61652 1.63100 1.29102 1.47670 1.38129 1.38476 1.07907 1.22191 1.02735 1.00773 0.83128 1.21947 0.91803 0.95470 0.87168 0.87740 1.23235 0.99431 0.94396 1.01023 1.21848 0.83532 0.96726 0.94974 1.44734 1.02805 1.06579 1.80308 1.19348 0.83979 0.94717 1.38702 0.90273 1.25522 1.00936 0.96552 1.02145 1.70024 1.29168 1.05627 1.54525 0.85179 0.79548 0.76738 0.77973 1.20438 1.22092 1.20735 1.21664 0.92633 0.87509 0.97848 0.91066 0.91386 0.93939 0.89233 0.91176 0.94301 0.91309 0.82121 0.78945 0.88131 0.90306 0.90670 0.90614 0.90891 0.97037 0.90919 0.94287 0.94415 0.95209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.99 71.98 0.65 -1.82 16 2 C -0.07 -1.73 3.08 -11.54 -0.04 -1.77 16 3 C -0.13 -2.56 9.09 71.98 0.65 -1.90 16 4 C -0.01 -0.24 4.72 -20.42 -0.10 -0.34 16 5 C -0.16 -2.90 9.17 21.08 0.19 -2.71 16 6 C -0.24 -4.14 10.92 66.81 0.73 -3.41 16 7 S 0.24 5.11 17.61 -56.49 -0.99 4.11 16 8 C -0.31 -8.77 6.31 24.07 0.15 -8.62 16 9 C 0.59 20.01 7.62 86.42 0.66 20.67 16 10 O -0.56 -21.58 13.42 -4.34 -0.06 -21.64 16 11 N -0.59 -20.26 2.84 -820.75 -2.33 -22.59 16 12 C 0.06 1.77 7.20 127.77 0.92 2.69 16 13 C 0.14 5.18 3.53 46.18 0.16 5.34 16 14 H 0.10 3.83 7.08 -2.39 -0.02 3.81 16 15 C -0.14 -5.45 6.69 31.99 0.21 -5.24 16 16 C 0.15 7.21 5.01 86.86 0.43 7.64 16 17 N -0.62 -30.29 2.86 -691.99 -1.98 -32.27 16 18 C -0.24 -12.83 10.27 84.03 0.86 -11.97 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 21 N -0.94 -53.76 10.09 21.65 0.22 -53.54 16 22 Si 0.98 44.23 29.55 68.60 2.03 46.26 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 C 0.13 5.33 6.17 86.73 0.54 5.86 16 27 H 0.07 1.03 7.51 -2.39 -0.02 1.02 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 2.76 4.95 -2.39 -0.01 2.75 16 31 H 0.07 1.08 8.00 -2.39 -0.02 1.06 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.16 2.17 7.68 -2.91 -0.02 2.15 16 35 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.10 3.90 4.21 -2.38 -0.01 3.89 16 37 H 0.08 2.21 5.98 -12.78 -0.08 2.13 16 38 H 0.08 2.15 6.84 -2.86 -0.02 2.13 16 39 H 0.08 2.85 8.14 -2.39 -0.02 2.84 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.01 0.57 5.89 -2.39 -0.01 0.55 16 42 H 0.07 3.95 5.88 -2.38 -0.01 3.94 16 43 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.03 1.23 7.73 -2.39 -0.02 1.21 16 Total: -1.00 -63.50 354.89 4.31 -59.19 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.93 Total: 18.76 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.50 Total: 1.72 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -4.09 Total: -108.40 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.06 Total: -21.64 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -0.99 Total: 4.11 kcal Total: -63.50 4.31 -59.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033678764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.311 kcal (2) G-P(sol) polarization free energy of solvation -63.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds