Wall clock time and date at job start Tue Mar 31 2020 13:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47240 * 2 1 4 4 C 1.50702 * 109.47180 * 119.99851 * 2 1 3 5 5 C 1.33820 * 124.52231 * 120.00072 * 4 2 1 6 6 C 1.37467 * 115.10300 * 180.02562 * 5 4 2 7 7 C 1.36651 * 113.29717 * 0.02562 * 6 5 4 8 8 C 1.46578 * 125.45904 * 179.97438 * 7 6 5 9 9 O 1.21702 * 119.99943 * 7.28257 * 8 7 6 10 10 N 1.34776 * 119.99791 * 187.27797 * 8 7 6 11 11 C 1.46497 * 120.00460 * 5.73800 * 10 8 7 12 12 C 1.46503 * 119.99870 * 185.73503 * 10 8 7 13 13 H 1.09001 * 110.63868 * 1.69465 * 12 10 8 14 14 C 1.55161 * 110.87011 * 124.93696 * 12 10 8 15 15 C 1.55127 * 101.48648 * 82.76839 * 14 12 10 16 16 N 1.47429 * 104.72024 * 37.29417 * 15 14 12 17 17 C 1.36939 * 125.64583 * 155.81620 * 16 15 14 18 18 H 1.07999 * 120.00086 * 189.55722 * 17 16 15 19 19 C 1.38807 * 119.99889 * 9.56119 * 17 16 15 20 20 N 1.31616 * 120.00479 * 10.66720 * 19 17 16 21 21 Si 1.86801 * 119.99696 * 190.66931 * 19 17 16 22 22 H 1.48503 * 109.47190 * 265.11190 * 21 19 17 23 23 H 1.48490 * 109.47382 * 25.11395 * 21 19 17 24 24 H 1.48498 * 109.47248 * 145.11691 * 21 19 17 25 25 C 1.47021 * 108.70265 * 335.55123 * 16 15 14 26 26 S 1.70620 * 124.52366 * 300.26997 * 4 2 1 27 27 H 1.08997 * 109.47103 * 299.99877 * 1 2 3 28 28 H 1.09003 * 109.47224 * 60.00210 * 1 2 3 29 29 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47088 * 239.99767 * 2 1 3 31 31 H 1.08997 * 109.47079 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46841 * 300.00025 * 3 2 1 33 33 H 1.08994 * 109.46897 * 59.99510 * 3 2 1 34 34 H 1.08005 * 122.44699 * 359.97438 * 5 4 2 35 35 H 1.07996 * 123.35292 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47405 * 275.89976 * 11 10 8 37 37 H 1.09007 * 109.47068 * 35.89308 * 11 10 8 38 38 H 1.08992 * 109.47793 * 155.89270 * 11 10 8 39 39 H 1.08999 * 111.00266 * 201.00692 * 14 12 10 40 40 H 1.09001 * 111.00837 * 324.82063 * 14 12 10 41 41 H 1.09000 * 110.50039 * 278.45424 * 15 14 12 42 42 H 1.08999 * 110.34291 * 156.05598 * 15 14 12 43 43 H 0.96997 * 120.00568 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.88059 * 120.70546 * 25 16 15 45 45 H 1.08997 * 109.88268 * 241.86799 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8049 -1.8029 1.2132 6 6 3.1504 -2.2925 2.4504 7 6 2.6335 -1.5632 3.4839 8 6 2.8326 -1.8470 4.9081 9 8 3.6111 -2.7169 5.2521 10 7 2.1536 -1.1445 5.8365 11 6 1.1258 -0.1860 5.4231 12 6 2.4435 -1.3395 7.2593 13 1 3.2498 -2.0608 7.3918 14 6 2.7955 0.0089 7.9415 15 6 1.3851 0.5832 8.2368 16 7 0.5745 -0.5892 8.6136 17 6 -0.5560 -0.5629 9.3860 18 1 -0.9931 -1.4867 9.7351 19 6 -1.1401 0.6512 9.7201 20 7 -0.7406 1.7581 9.1308 21 14 -2.4934 0.7139 11.0062 22 1 -3.8171 0.6628 10.3350 23 1 -2.3586 -0.4459 11.9236 24 1 -2.3805 1.9748 11.7825 25 6 1.1774 -1.7904 8.0176 26 16 1.6866 -0.2329 2.8316 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1323 -2.2666 0.2943 35 1 3.7682 -3.1670 2.5915 36 1 1.5951 0.7663 5.1767 37 1 0.6019 -0.5701 4.5477 38 1 0.4154 -0.0413 6.2370 39 1 3.3554 -0.1538 8.8625 40 1 3.3463 0.6588 7.2616 41 1 0.9728 1.0592 7.3471 42 1 1.4305 1.2940 9.0619 43 1 -1.1490 2.6064 9.3640 44 1 1.4472 -2.4977 8.8018 45 1 0.4748 -2.2526 7.3243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033697442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:51 Heat of formation + Delta-G solvation = 27.081123 kcal Electronic energy + Delta-G solvation = -25452.216119 eV Core-core repulsion = 21983.341633 eV Total energy + Delta-G solvation = -3468.874486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.94409 -38.38177 -37.31010 -35.19675 -34.45886 -32.20358 -29.67451 -28.85236 -28.00503 -27.44589 -26.37718 -25.05188 -24.07734 -21.82718 -21.35296 -20.27125 -19.39987 -18.54402 -17.77791 -16.95439 -16.21425 -15.81073 -15.32537 -14.94388 -14.71607 -14.60919 -13.98359 -13.89554 -13.87388 -13.49809 -13.06350 -12.90610 -12.66732 -12.52404 -12.36914 -12.21176 -11.87703 -11.83201 -11.65391 -11.54100 -11.43079 -11.34661 -11.10209 -10.90151 -10.84792 -10.59722 -10.21902 -10.08193 -10.00369 -9.70498 -9.57451 -8.74620 -8.61844 -8.53564 -8.20391 -6.86955 -5.81251 -3.12949 0.55011 1.51062 1.98290 2.40589 3.19894 3.36145 3.36736 3.43471 3.45281 4.37192 4.45939 4.62716 4.70756 4.84505 5.12914 5.28928 5.32787 5.32953 5.37867 5.39891 5.44556 5.45014 5.53735 5.54357 5.65057 5.71249 5.73372 5.83232 5.89857 5.93672 6.00696 6.15158 6.16721 6.24262 6.30473 6.36621 6.50452 6.55909 6.68097 6.99290 7.39741 7.49043 7.63446 7.72899 8.18998 8.32574 9.13533 9.75037 10.41853 11.32042 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.003488 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.214422 B = 8025.407752 C = 9089.865363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C -0.149 4.149 4 C -0.221 4.221 5 C -0.157 4.157 6 C -0.057 4.057 7 C -0.268 4.268 8 C 0.586 3.414 9 O -0.542 6.542 10 N -0.589 5.589 11 C 0.051 3.949 12 C 0.128 3.872 13 H 0.102 0.898 14 C -0.157 4.157 15 C 0.163 3.837 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.126 3.874 26 S 0.242 5.758 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.253 0.747 44 H 0.035 0.965 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.530 -1.205 -18.199 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.046 4.046 3 C -0.206 4.206 4 C -0.340 4.340 5 C -0.187 4.187 6 C -0.091 4.091 7 C -0.388 4.388 8 C 0.374 3.626 9 O -0.422 6.422 10 N -0.320 5.320 11 C -0.093 4.093 12 C 0.025 3.975 13 H 0.120 0.880 14 C -0.196 4.196 15 C 0.039 3.961 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.206 1.206 24 H -0.216 1.216 25 C -0.001 4.001 26 S 0.512 5.488 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.944 -0.314 -17.287 17.983 hybrid contribution 0.059 -1.089 -0.186 1.106 sum 5.003 -1.403 -17.473 18.229 Atomic orbital electron populations 1.21943 0.93857 1.02472 1.02410 1.19720 0.95924 0.95581 0.93404 1.21940 1.01557 0.94741 1.02388 1.24931 1.04176 1.01953 1.02940 1.19872 1.02434 0.97873 0.98525 1.20646 0.98434 0.99646 0.90358 1.24648 1.11770 1.04878 0.97530 1.17038 0.80552 0.81376 0.83630 1.90778 1.37816 1.32292 1.81279 1.47634 1.37192 1.40625 1.06501 1.22365 0.92681 0.91934 1.02320 1.22161 0.98593 0.98768 0.77980 0.87963 1.23405 1.00722 0.95885 0.99631 1.21688 0.84712 0.90000 0.99712 1.44542 1.28259 1.01238 1.58891 1.19016 1.00973 0.93003 1.22772 0.90623 1.24771 0.99306 0.95690 1.00357 1.69934 1.44931 0.97968 1.43687 0.86146 0.81462 0.77071 0.81341 1.21648 1.20624 1.21623 1.21656 0.92384 0.91330 0.94722 1.83811 1.45208 1.26823 0.92918 0.92148 0.91879 0.92147 0.89816 0.92202 0.91893 0.92171 0.84697 0.83398 0.91985 0.91633 0.85491 0.90755 0.91823 0.94514 0.91235 0.93670 0.94667 0.95361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.08 37.16 0.34 -0.83 16 2 C -0.03 -0.22 3.25 -91.77 -0.30 -0.52 16 3 C -0.15 -1.13 9.09 37.16 0.34 -0.79 16 4 C -0.22 -2.35 4.95 -35.86 -0.18 -2.53 16 5 C -0.16 -1.72 9.95 -41.41 -0.41 -2.14 16 6 C -0.06 -0.75 10.02 -40.44 -0.41 -1.16 16 7 C -0.27 -3.95 6.20 -36.79 -0.23 -4.18 16 8 C 0.59 10.32 7.63 -12.90 -0.10 10.22 16 9 O -0.54 -10.90 16.24 5.19 0.08 -10.82 16 10 N -0.59 -10.27 2.83 -173.42 -0.49 -10.76 16 11 C 0.05 0.83 7.09 59.85 0.42 1.26 16 12 C 0.13 2.38 3.56 -66.10 -0.24 2.15 16 13 H 0.10 1.90 7.01 -51.93 -0.36 1.53 16 14 C -0.16 -2.91 6.55 -24.46 -0.16 -3.07 16 15 C 0.16 3.69 4.54 -2.41 -0.01 3.68 16 16 N -0.60 -14.65 2.98 -169.94 -0.51 -15.15 16 17 C -0.23 -6.16 10.23 -15.06 -0.15 -6.32 16 18 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 19 C 0.00 -0.12 5.39 -17.43 -0.09 -0.22 16 20 N -0.92 -25.52 10.71 55.49 0.59 -24.93 16 21 Si 0.91 21.44 29.57 -169.99 -5.03 16.42 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.13 2.63 6.29 -3.07 -0.02 2.61 16 26 S 0.24 2.91 17.11 -107.50 -1.84 1.07 16 27 H 0.06 0.50 7.89 -51.93 -0.41 0.09 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.49 7.91 -51.93 -0.41 0.08 16 34 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.06 0.92 7.51 -51.93 -0.39 0.53 16 37 H 0.07 0.96 5.10 -27.28 -0.14 0.82 16 38 H 0.13 2.48 4.76 -51.93 -0.25 2.24 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.85 5.46 -51.93 -0.28 0.57 16 42 H 0.07 1.78 6.94 -51.93 -0.36 1.41 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.61 8.04 -51.93 -0.42 0.20 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -29.98 362.53 -9.71 -39.69 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.79 Total: 0.84 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.19 Total: -1.82 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.40 Total: -50.84 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.84 Total: 1.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.98 -9.71 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033697442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.770 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds