Wall clock time and date at job start Tue Mar 31 2020 13:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47240 * 2 1 4 4 C 1.50702 * 109.47180 * 119.99851 * 2 1 3 5 5 C 1.33820 * 124.52231 * 120.00072 * 4 2 1 6 6 C 1.37467 * 115.10300 * 180.02562 * 5 4 2 7 7 C 1.36651 * 113.29717 * 0.02562 * 6 5 4 8 8 C 1.46578 * 125.45904 * 179.97438 * 7 6 5 9 9 O 1.21702 * 119.99943 * 7.28257 * 8 7 6 10 10 N 1.34776 * 119.99791 * 187.27797 * 8 7 6 11 11 C 1.46497 * 120.00460 * 5.73800 * 10 8 7 12 12 C 1.46503 * 119.99870 * 185.73503 * 10 8 7 13 13 H 1.09001 * 110.63868 * 1.69465 * 12 10 8 14 14 C 1.55161 * 110.87011 * 124.93696 * 12 10 8 15 15 C 1.55127 * 101.48648 * 82.76839 * 14 12 10 16 16 N 1.47429 * 104.72024 * 37.29417 * 15 14 12 17 17 C 1.36939 * 125.64583 * 155.81620 * 16 15 14 18 18 H 1.07999 * 120.00086 * 189.55722 * 17 16 15 19 19 C 1.38807 * 119.99889 * 9.56119 * 17 16 15 20 20 N 1.31616 * 120.00479 * 10.66720 * 19 17 16 21 21 Si 1.86801 * 119.99696 * 190.66931 * 19 17 16 22 22 H 1.48503 * 109.47190 * 265.11190 * 21 19 17 23 23 H 1.48490 * 109.47382 * 25.11395 * 21 19 17 24 24 H 1.48498 * 109.47248 * 145.11691 * 21 19 17 25 25 C 1.47021 * 108.70265 * 335.55123 * 16 15 14 26 26 S 1.70620 * 124.52366 * 300.26997 * 4 2 1 27 27 H 1.08997 * 109.47103 * 299.99877 * 1 2 3 28 28 H 1.09003 * 109.47224 * 60.00210 * 1 2 3 29 29 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47088 * 239.99767 * 2 1 3 31 31 H 1.08997 * 109.47079 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46841 * 300.00025 * 3 2 1 33 33 H 1.08994 * 109.46897 * 59.99510 * 3 2 1 34 34 H 1.08005 * 122.44699 * 359.97438 * 5 4 2 35 35 H 1.07996 * 123.35292 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47405 * 275.89976 * 11 10 8 37 37 H 1.09007 * 109.47068 * 35.89308 * 11 10 8 38 38 H 1.08992 * 109.47793 * 155.89270 * 11 10 8 39 39 H 1.08999 * 111.00266 * 201.00692 * 14 12 10 40 40 H 1.09001 * 111.00837 * 324.82063 * 14 12 10 41 41 H 1.09000 * 110.50039 * 278.45424 * 15 14 12 42 42 H 1.08999 * 110.34291 * 156.05598 * 15 14 12 43 43 H 0.96997 * 120.00568 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.88059 * 120.70546 * 25 16 15 45 45 H 1.08997 * 109.88268 * 241.86799 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8049 -1.8029 1.2132 6 6 3.1504 -2.2925 2.4504 7 6 2.6335 -1.5632 3.4839 8 6 2.8326 -1.8470 4.9081 9 8 3.6111 -2.7169 5.2521 10 7 2.1536 -1.1445 5.8365 11 6 1.1258 -0.1860 5.4231 12 6 2.4435 -1.3395 7.2593 13 1 3.2498 -2.0608 7.3918 14 6 2.7955 0.0089 7.9415 15 6 1.3851 0.5832 8.2368 16 7 0.5745 -0.5892 8.6136 17 6 -0.5560 -0.5629 9.3860 18 1 -0.9931 -1.4867 9.7351 19 6 -1.1401 0.6512 9.7201 20 7 -0.7406 1.7581 9.1308 21 14 -2.4934 0.7139 11.0062 22 1 -3.8171 0.6628 10.3350 23 1 -2.3586 -0.4459 11.9236 24 1 -2.3805 1.9748 11.7825 25 6 1.1774 -1.7904 8.0176 26 16 1.6866 -0.2329 2.8316 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1323 -2.2666 0.2943 35 1 3.7682 -3.1670 2.5915 36 1 1.5951 0.7663 5.1767 37 1 0.6019 -0.5701 4.5477 38 1 0.4154 -0.0413 6.2370 39 1 3.3554 -0.1538 8.8625 40 1 3.3463 0.6588 7.2616 41 1 0.9728 1.0592 7.3471 42 1 1.4305 1.2940 9.0619 43 1 -1.1490 2.6064 9.3640 44 1 1.4472 -2.4977 8.8018 45 1 0.4748 -2.2526 7.3243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033697442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:50 Heat of formation + Delta-G solvation = 11.533645 kcal Electronic energy + Delta-G solvation = -25452.890308 eV Core-core repulsion = 21983.341633 eV Total energy + Delta-G solvation = -3469.548675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35722 -39.48627 -38.69703 -36.07952 -35.97143 -34.05113 -31.31427 -30.23153 -29.42375 -28.02869 -27.85477 -26.51656 -25.54189 -23.04237 -22.15340 -22.07334 -20.77033 -19.65148 -19.06303 -18.84187 -17.59553 -16.88651 -16.65790 -16.63629 -16.13176 -15.69326 -15.35035 -15.22259 -14.74019 -14.51399 -14.46688 -14.04829 -13.98763 -13.92409 -13.60166 -13.41552 -13.35785 -12.99840 -12.93903 -12.89351 -12.75276 -12.46728 -12.33814 -12.11499 -12.06003 -12.02167 -11.89285 -11.85447 -11.58360 -11.28405 -11.00287 -10.61772 -9.94213 -9.56437 -9.36763 -8.84651 -7.87102 -5.20167 -0.47240 0.51544 1.03620 1.39152 1.48386 1.49996 1.58973 1.84888 2.13219 2.50954 3.33355 3.44388 3.64338 3.69887 3.81964 3.97095 4.00275 4.04393 4.22838 4.26779 4.35521 4.42143 4.47590 4.58718 4.63977 4.66798 4.77166 4.77697 4.85761 4.88273 4.96614 4.98384 5.04601 5.08653 5.11614 5.24218 5.35563 5.36767 5.45217 5.47311 5.50464 5.60675 5.75530 6.20344 6.27002 6.96183 7.10310 7.75568 8.42299 9.24604 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.003488 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.214422 B = 8025.407752 C = 9089.865363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.149 4.149 4 C -0.204 4.204 5 C -0.163 4.163 6 C -0.049 4.049 7 C -0.308 4.308 8 C 0.586 3.414 9 O -0.575 6.575 10 N -0.591 5.591 11 C 0.061 3.939 12 C 0.138 3.862 13 H 0.107 0.893 14 C -0.140 4.140 15 C 0.171 3.829 16 N -0.617 5.617 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.052 4.052 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.287 1.287 23 H -0.275 1.275 24 H -0.293 1.293 25 C 0.128 3.872 26 S 0.250 5.750 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.250 0.750 44 H 0.038 0.962 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.651 -1.106 -20.404 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.047 4.047 3 C -0.207 4.207 4 C -0.323 4.323 5 C -0.192 4.192 6 C -0.083 4.083 7 C -0.428 4.428 8 C 0.376 3.624 9 O -0.457 6.457 10 N -0.322 5.322 11 C -0.083 4.083 12 C 0.034 3.966 13 H 0.125 0.875 14 C -0.180 4.180 15 C 0.047 3.953 16 N -0.344 5.344 17 C -0.375 4.375 18 H 0.091 0.909 19 C -0.246 4.246 20 N -0.587 5.587 21 Si 0.800 3.200 22 H -0.214 1.214 23 H -0.200 1.200 24 H -0.219 1.219 25 C 0.002 3.998 26 S 0.520 5.480 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.180 0.820 35 H 0.166 0.834 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 5.063 -0.220 -19.498 20.146 hybrid contribution 0.008 -1.138 0.359 1.194 sum 5.071 -1.358 -19.139 19.846 Atomic orbital electron populations 1.21965 0.93419 1.02463 1.02945 1.19876 0.96221 0.95906 0.92704 1.21957 1.01507 0.94268 1.02948 1.25286 1.02742 1.01373 1.02903 1.20086 1.02450 0.97988 0.98666 1.20873 0.97387 0.99183 0.90880 1.24459 1.14752 1.07352 0.96217 1.17388 0.79746 0.80534 0.84728 1.90744 1.39241 1.33671 1.82091 1.47643 1.37557 1.40961 1.06031 1.22254 0.91901 0.92532 1.01655 1.21959 0.97277 0.98640 0.78690 0.87545 1.23268 0.98438 0.95776 1.00484 1.21518 0.86762 0.89119 0.97922 1.44724 1.28041 1.02759 1.58886 1.19297 1.01883 0.93106 1.23183 0.90852 1.25480 1.01556 0.95438 1.02114 1.70092 1.45915 0.98105 1.44634 0.85182 0.78931 0.76836 0.79035 1.21360 1.19979 1.21893 1.21694 0.93091 0.90336 0.94721 1.83663 1.44658 1.25680 0.93965 0.93003 0.90069 0.92437 0.87941 0.92316 0.90109 0.92949 0.81965 0.83358 0.90564 0.90065 0.88829 0.89890 0.89912 0.95267 0.94645 0.94108 0.94403 0.96223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.08 71.98 0.65 -1.27 16 2 C -0.03 -0.36 3.25 -11.54 -0.04 -0.40 16 3 C -0.15 -1.83 9.09 71.98 0.65 -1.18 16 4 C -0.20 -3.80 4.95 24.68 0.12 -3.67 16 5 C -0.16 -3.13 9.95 21.08 0.21 -2.92 16 6 C -0.05 -1.20 10.02 21.72 0.22 -0.99 16 7 C -0.31 -8.82 6.20 24.08 0.15 -8.67 16 8 C 0.59 20.54 7.63 86.42 0.66 21.20 16 9 O -0.57 -23.24 16.24 -4.36 -0.07 -23.31 16 10 N -0.59 -20.62 2.83 -820.78 -2.32 -22.94 16 11 C 0.06 1.97 7.09 127.77 0.91 2.87 16 12 C 0.14 5.13 3.56 46.18 0.16 5.30 16 13 H 0.11 3.92 7.01 -2.39 -0.02 3.90 16 14 C -0.14 -5.16 6.55 32.06 0.21 -4.95 16 15 C 0.17 7.89 4.54 86.93 0.39 8.29 16 16 N -0.62 -30.66 2.98 -691.56 -2.06 -32.73 16 17 C -0.25 -13.44 10.23 84.03 0.86 -12.58 16 18 H 0.07 3.94 7.85 -2.91 -0.02 3.91 16 19 C -0.05 -2.82 5.39 84.86 0.46 -2.36 16 20 N -0.94 -53.30 10.71 21.65 0.23 -53.06 16 21 Si 0.97 44.51 29.57 68.60 2.03 46.54 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 C 0.13 5.44 6.29 86.73 0.55 5.98 16 26 S 0.25 5.64 17.11 -56.49 -0.97 4.67 16 27 H 0.05 0.75 7.89 -2.39 -0.02 0.73 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.10 1.06 8.07 -2.38 -0.02 1.04 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.73 7.91 -2.39 -0.02 0.71 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 36 H 0.08 2.22 7.51 -2.39 -0.02 2.21 16 37 H 0.08 2.35 5.10 -18.05 -0.09 2.26 16 38 H 0.09 3.75 4.76 -2.39 -0.01 3.74 16 39 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.03 1.40 5.46 -2.39 -0.01 1.38 16 42 H 0.04 1.86 6.94 -2.39 -0.02 1.84 16 43 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.02 0.87 8.04 -2.39 -0.02 0.85 16 Total: -1.00 -65.07 362.53 3.91 -61.16 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.90 Total: 15.01 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.17 Total: 4.65 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -4.15 Total: -108.73 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.07 Total: -23.31 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -0.97 Total: 4.67 kcal Total: -65.07 3.91 -61.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033697442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.696 kcal (2) G-P(sol) polarization free energy of solvation -65.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds