Wall clock time and date at job start Tue Mar 31 2020 13:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46926 * 2 1 4 4 C 1.33811 * 124.52557 * 89.72464 * 3 2 1 5 5 C 1.37470 * 115.10468 * 179.85171 * 4 3 2 6 6 C 1.36647 * 113.29563 * 0.42129 * 5 4 3 7 7 C 1.46581 * 125.46198 * 179.80642 * 6 5 4 8 8 O 1.21707 * 119.99779 * 352.11897 * 7 6 5 9 9 N 1.34780 * 120.00383 * 172.11224 * 7 6 5 10 10 C 1.46507 * 119.99753 * 2.65761 * 9 7 6 11 11 C 1.52995 * 109.46900 * 81.83075 * 10 9 7 12 12 C 1.46498 * 120.00292 * 182.65901 * 9 7 6 13 13 H 1.09000 * 110.88621 * 7.00521 * 12 9 7 14 14 C 1.55155 * 111.00550 * 243.12265 * 12 9 7 15 15 C 1.54326 * 102.94245 * 277.42903 * 14 12 9 16 16 N 1.47021 * 107.26908 * 337.80318 * 15 14 12 17 17 C 1.36940 * 125.64787 * 178.98936 * 16 15 14 18 18 H 1.08000 * 119.99891 * 179.97438 * 17 16 15 19 19 C 1.38812 * 119.99802 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00048 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99960 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47148 * 59.99889 * 21 19 17 23 23 H 1.48500 * 109.47254 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47011 * 299.99591 * 21 19 17 25 25 C 1.47430 * 108.70419 * 358.94376 * 16 15 14 26 26 S 1.70618 * 124.52057 * 270.02186 * 3 2 1 27 27 H 1.08994 * 109.47207 * 300.00108 * 1 2 3 28 28 H 1.08996 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47137 * 60.00417 * 1 2 3 30 30 H 1.09004 * 109.47137 * 119.99583 * 2 1 3 31 31 H 1.08994 * 109.47681 * 239.99654 * 2 1 3 32 32 H 1.08001 * 122.44900 * 0.02562 * 4 3 2 33 33 H 1.08007 * 123.35799 * 180.19499 * 5 4 3 34 34 H 1.08996 * 109.46560 * 201.83356 * 10 9 7 35 35 H 1.08999 * 109.46770 * 321.83278 * 10 9 7 36 36 H 1.09004 * 109.47027 * 184.73348 * 11 10 9 37 37 H 1.08996 * 109.47656 * 304.73891 * 11 10 9 38 38 H 1.09006 * 109.47147 * 64.73885 * 11 10 9 39 39 H 1.09003 * 110.71490 * 35.79310 * 14 12 9 40 40 H 1.08996 * 110.71944 * 159.06132 * 14 12 9 41 41 H 1.08994 * 109.88244 * 97.22215 * 15 14 12 42 42 H 1.08998 * 109.87982 * 218.38602 * 15 14 12 43 43 H 0.97000 * 119.99720 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.36256 * 265.28991 * 25 16 15 45 45 H 1.09004 * 110.36338 * 142.96790 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2801 2.1376 1.1024 5 6 2.7361 3.4148 0.8774 6 6 2.8452 3.7239 -0.4492 7 6 3.2994 5.0089 -0.9884 8 8 3.4800 5.9527 -0.2414 9 7 3.5174 5.1455 -2.3115 10 6 3.2446 4.0273 -3.2180 11 6 1.7509 3.9900 -3.5467 12 6 4.0270 6.4119 -2.8431 13 1 4.2929 7.0935 -2.0352 14 6 3.0000 7.0643 -3.8060 15 6 3.2626 6.3323 -5.1390 16 7 4.6283 5.7914 -5.0782 17 6 5.2397 5.0558 -6.0582 18 1 6.2506 4.7029 -5.9172 19 6 4.5600 4.7637 -7.2327 20 7 3.3278 5.1933 -7.4043 21 14 5.3937 3.7596 -8.5692 22 1 5.7648 2.4272 -8.0286 23 1 4.4621 3.5872 -9.7128 24 1 6.6167 4.4657 -9.0286 25 6 5.2310 6.1730 -3.7880 26 16 2.3540 2.3326 -1.4058 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.1351 1.7408 2.0964 33 1 2.9803 4.1065 1.6702 34 1 3.8159 4.1572 -4.1371 35 1 3.5346 3.0922 -2.7389 36 1 1.5340 3.1102 -4.1525 37 1 1.1762 3.9450 -2.6217 38 1 1.4782 4.8885 -4.1004 39 1 1.9813 6.8855 -3.4619 40 1 3.1918 8.1324 -3.9081 41 1 2.5471 5.5195 -5.2627 42 1 3.1780 7.0331 -5.9695 43 1 2.8530 4.9894 -8.2253 44 1 5.8145 7.0872 -3.8976 45 1 5.8571 5.3656 -3.4082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033887526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:21 Heat of formation + Delta-G solvation = 33.496213 kcal Electronic energy + Delta-G solvation = -26222.502834 eV Core-core repulsion = 22753.906527 eV Total energy + Delta-G solvation = -3468.596307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.01037 -38.21251 -37.18563 -34.73955 -33.77810 -32.46682 -30.45675 -29.39359 -28.68031 -27.09028 -25.25191 -24.42471 -23.04470 -22.40402 -21.66860 -20.12838 -19.35677 -18.32258 -17.79384 -17.02191 -16.14926 -15.82040 -15.10669 -14.86275 -14.69157 -14.36168 -14.18639 -13.87361 -13.72467 -13.38892 -13.13143 -12.83814 -12.70449 -12.24011 -12.11553 -11.98571 -11.95891 -11.85574 -11.62317 -11.28408 -11.14264 -11.00555 -10.94953 -10.87389 -10.69168 -10.42074 -10.21126 -10.08420 -9.94356 -9.71054 -9.51718 -8.74152 -8.61378 -8.29294 -8.12424 -6.87827 -5.80600 -3.15519 0.64836 1.63809 2.10039 2.49861 3.30249 3.34874 3.40521 3.40790 3.45103 4.42033 4.59848 4.78255 4.86417 5.08961 5.27017 5.29033 5.35206 5.39883 5.44421 5.47565 5.57422 5.63229 5.63717 5.70801 5.75648 5.81393 5.89967 5.97039 6.06003 6.14643 6.15812 6.26381 6.33116 6.45950 6.47875 6.50451 6.57573 6.67244 6.74930 7.08089 7.49326 7.55868 7.75821 7.78092 8.15573 8.43149 9.12365 9.71465 10.36610 11.29853 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.004376 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.483338 B = 6396.948242 C = 7585.970958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.242 4.242 4 C -0.159 4.159 5 C -0.059 4.059 6 C -0.271 4.271 7 C 0.585 3.415 8 O -0.547 6.547 9 N -0.579 5.579 10 C 0.072 3.928 11 C -0.175 4.175 12 C 0.125 3.875 13 H 0.101 0.899 14 C -0.157 4.157 15 C 0.166 3.834 16 N -0.602 5.602 17 C -0.237 4.237 18 H 0.078 0.922 19 C -0.001 4.001 20 N -0.917 5.917 21 Si 0.910 3.090 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.123 3.877 26 S 0.263 5.737 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.254 0.746 44 H 0.034 0.966 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.144 -7.847 12.839 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.360 4.360 4 C -0.190 4.190 5 C -0.092 4.092 6 C -0.391 4.391 7 C 0.373 3.627 8 O -0.427 6.427 9 N -0.310 5.310 10 C -0.053 4.053 11 C -0.234 4.234 12 C 0.021 3.979 13 H 0.119 0.881 14 C -0.197 4.197 15 C 0.042 3.958 16 N -0.329 5.329 17 C -0.364 4.364 18 H 0.096 0.904 19 C -0.198 4.198 20 N -0.564 5.564 21 Si 0.740 3.260 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.003 4.003 26 S 0.534 5.466 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.216 -7.758 11.444 14.777 hybrid contribution 0.485 -0.299 0.868 1.038 sum -4.730 -8.057 12.312 15.456 Atomic orbital electron populations 1.21787 0.94346 1.01855 1.02547 1.20078 0.96139 0.90012 1.03013 1.25184 1.06350 1.02633 1.01863 1.19798 1.05769 0.94228 0.99168 1.20613 0.97392 0.96162 0.95060 1.24628 1.16727 0.99716 0.98055 1.17087 0.77377 0.86094 0.82159 1.90764 1.53829 1.39954 1.58193 1.47709 1.63274 1.14558 1.05433 1.22437 0.98531 0.86461 0.97863 1.22485 0.95555 1.04160 1.01152 1.22271 0.95308 0.84243 0.96044 0.88114 1.23294 0.98368 0.99781 0.98213 1.21426 0.86804 0.96478 0.91088 1.44637 1.12133 1.61709 1.14436 1.18998 0.97502 1.25420 0.94527 0.90427 1.24769 0.96444 1.00716 0.97909 1.69949 1.10438 1.49444 1.26589 0.86244 0.78336 0.79936 0.81497 1.21100 1.21593 1.21197 1.21922 0.93403 0.98223 0.86791 1.84306 1.57646 1.00913 1.03708 0.92383 0.92146 0.92300 0.90524 0.90839 0.85016 0.83586 0.82959 0.91954 0.91123 0.93257 0.90224 0.91769 0.91363 0.92005 0.93979 0.93588 0.94851 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.05 -0.48 6.36 -27.88 -0.18 -0.66 16 3 C -0.24 -2.79 5.53 -35.86 -0.20 -2.99 16 4 C -0.16 -1.89 9.99 -41.42 -0.41 -2.30 16 5 C -0.06 -0.82 10.02 -40.44 -0.41 -1.22 16 6 C -0.27 -4.21 6.06 -36.79 -0.22 -4.44 16 7 C 0.58 10.62 7.54 -12.89 -0.10 10.53 16 8 O -0.55 -11.22 16.25 5.18 0.08 -11.13 16 9 N -0.58 -10.38 2.53 -165.24 -0.42 -10.80 16 10 C 0.07 1.24 4.64 -4.04 -0.02 1.23 16 11 C -0.18 -2.79 8.13 37.16 0.30 -2.49 16 12 C 0.13 2.31 3.64 -65.79 -0.24 2.07 16 13 H 0.10 1.85 7.05 -51.93 -0.37 1.48 16 14 C -0.16 -2.92 6.08 -24.90 -0.15 -3.07 16 15 C 0.17 3.70 4.20 -3.06 -0.01 3.69 16 16 N -0.60 -14.00 1.85 -170.07 -0.31 -14.31 16 17 C -0.24 -6.05 9.75 -15.06 -0.15 -6.20 16 18 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 19 C 0.00 -0.04 5.49 -17.43 -0.10 -0.13 16 20 N -0.92 -24.77 10.31 55.49 0.57 -24.20 16 21 Si 0.91 20.82 29.55 -169.99 -5.02 15.80 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.12 2.47 6.36 -2.53 -0.02 2.45 16 26 S 0.26 3.43 15.37 -107.50 -1.65 1.78 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 34 H 0.15 3.17 4.31 -51.93 -0.22 2.95 16 35 H 0.06 1.01 4.47 -22.13 -0.10 0.91 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.72 6.18 -49.06 -0.30 0.42 16 38 H 0.08 1.40 4.83 -51.93 -0.25 1.15 16 39 H 0.06 1.14 7.46 -51.93 -0.39 0.76 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.44 4.31 -51.93 -0.22 1.22 16 42 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -28.52 352.53 -9.41 -37.93 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.44 Total: 3.97 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.53 Total: -4.35 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.16 Total: -49.31 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.65 Total: 1.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.52 -9.41 -37.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033887526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.427 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds