Wall clock time and date at job start Tue Mar 31 2020 13:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46926 * 2 1 4 4 C 1.33811 * 124.52557 * 89.72464 * 3 2 1 5 5 C 1.37470 * 115.10468 * 179.85171 * 4 3 2 6 6 C 1.36647 * 113.29563 * 0.42129 * 5 4 3 7 7 C 1.46581 * 125.46198 * 179.80642 * 6 5 4 8 8 O 1.21707 * 119.99779 * 352.11897 * 7 6 5 9 9 N 1.34780 * 120.00383 * 172.11224 * 7 6 5 10 10 C 1.46507 * 119.99753 * 2.65761 * 9 7 6 11 11 C 1.52995 * 109.46900 * 81.83075 * 10 9 7 12 12 C 1.46498 * 120.00292 * 182.65901 * 9 7 6 13 13 H 1.09000 * 110.88621 * 7.00521 * 12 9 7 14 14 C 1.55155 * 111.00550 * 243.12265 * 12 9 7 15 15 C 1.54326 * 102.94245 * 277.42903 * 14 12 9 16 16 N 1.47021 * 107.26908 * 337.80318 * 15 14 12 17 17 C 1.36940 * 125.64787 * 178.98936 * 16 15 14 18 18 H 1.08000 * 119.99891 * 179.97438 * 17 16 15 19 19 C 1.38812 * 119.99802 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00048 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99960 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47148 * 59.99889 * 21 19 17 23 23 H 1.48500 * 109.47254 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47011 * 299.99591 * 21 19 17 25 25 C 1.47430 * 108.70419 * 358.94376 * 16 15 14 26 26 S 1.70618 * 124.52057 * 270.02186 * 3 2 1 27 27 H 1.08994 * 109.47207 * 300.00108 * 1 2 3 28 28 H 1.08996 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47137 * 60.00417 * 1 2 3 30 30 H 1.09004 * 109.47137 * 119.99583 * 2 1 3 31 31 H 1.08994 * 109.47681 * 239.99654 * 2 1 3 32 32 H 1.08001 * 122.44900 * 0.02562 * 4 3 2 33 33 H 1.08007 * 123.35799 * 180.19499 * 5 4 3 34 34 H 1.08996 * 109.46560 * 201.83356 * 10 9 7 35 35 H 1.08999 * 109.46770 * 321.83278 * 10 9 7 36 36 H 1.09004 * 109.47027 * 184.73348 * 11 10 9 37 37 H 1.08996 * 109.47656 * 304.73891 * 11 10 9 38 38 H 1.09006 * 109.47147 * 64.73885 * 11 10 9 39 39 H 1.09003 * 110.71490 * 35.79310 * 14 12 9 40 40 H 1.08996 * 110.71944 * 159.06132 * 14 12 9 41 41 H 1.08994 * 109.88244 * 97.22215 * 15 14 12 42 42 H 1.08998 * 109.87982 * 218.38602 * 15 14 12 43 43 H 0.97000 * 119.99720 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.36256 * 265.28991 * 25 16 15 45 45 H 1.09004 * 110.36338 * 142.96790 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2801 2.1376 1.1024 5 6 2.7361 3.4148 0.8774 6 6 2.8452 3.7239 -0.4492 7 6 3.2994 5.0089 -0.9884 8 8 3.4800 5.9527 -0.2414 9 7 3.5174 5.1455 -2.3115 10 6 3.2446 4.0273 -3.2180 11 6 1.7509 3.9900 -3.5467 12 6 4.0270 6.4119 -2.8431 13 1 4.2929 7.0935 -2.0352 14 6 3.0000 7.0643 -3.8060 15 6 3.2626 6.3323 -5.1390 16 7 4.6283 5.7914 -5.0782 17 6 5.2397 5.0558 -6.0582 18 1 6.2506 4.7029 -5.9172 19 6 4.5600 4.7637 -7.2327 20 7 3.3278 5.1933 -7.4043 21 14 5.3937 3.7596 -8.5692 22 1 5.7648 2.4272 -8.0286 23 1 4.4621 3.5872 -9.7128 24 1 6.6167 4.4657 -9.0286 25 6 5.2310 6.1730 -3.7880 26 16 2.3540 2.3326 -1.4058 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.1351 1.7408 2.0964 33 1 2.9803 4.1065 1.6702 34 1 3.8159 4.1572 -4.1371 35 1 3.5346 3.0922 -2.7389 36 1 1.5340 3.1102 -4.1525 37 1 1.1762 3.9450 -2.6217 38 1 1.4782 4.8885 -4.1004 39 1 1.9813 6.8855 -3.4619 40 1 3.1918 8.1324 -3.9081 41 1 2.5471 5.5195 -5.2627 42 1 3.1780 7.0331 -5.9695 43 1 2.8530 4.9894 -8.2253 44 1 5.8145 7.0872 -3.8976 45 1 5.8571 5.3656 -3.4082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033887526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:20 Heat of formation + Delta-G solvation = 19.919489 kcal Electronic energy + Delta-G solvation = -26223.091564 eV Core-core repulsion = 22753.906527 eV Total energy + Delta-G solvation = -3469.185038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45805 -39.46531 -38.50819 -36.28502 -34.71626 -34.15353 -31.98809 -31.06860 -29.81200 -28.62762 -26.57662 -25.96879 -24.38286 -23.32136 -22.90035 -21.93130 -20.74063 -19.46411 -19.12005 -18.87030 -17.53115 -16.92025 -16.63902 -16.40628 -16.02305 -15.79559 -15.61332 -15.01726 -14.81753 -14.59947 -14.46715 -14.06594 -13.86112 -13.82500 -13.63061 -13.49768 -13.14352 -12.90219 -12.83795 -12.78145 -12.53530 -12.37593 -12.32593 -12.07910 -12.07034 -12.03629 -11.90144 -11.76118 -11.51098 -11.23507 -10.94214 -10.63105 -9.89682 -9.50768 -9.25941 -8.76210 -7.79083 -5.14661 -0.43448 0.56965 1.07967 1.43087 1.52129 1.53252 1.59241 1.92504 2.17045 2.53355 3.40177 3.47670 3.67437 3.80791 3.87961 3.97160 4.02393 4.19060 4.28908 4.33555 4.39918 4.44493 4.51249 4.54749 4.61316 4.70952 4.81894 4.84479 4.87624 4.93631 4.96453 5.01847 5.05784 5.15332 5.23724 5.28179 5.30002 5.36575 5.51437 5.53127 5.61738 5.71873 5.87886 6.23955 6.37970 7.03154 7.15295 7.79534 8.44318 9.29751 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.004376 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.483338 B = 6396.948242 C = 7585.970958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.223 4.223 4 C -0.165 4.165 5 C -0.050 4.050 6 C -0.310 4.310 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.582 5.582 10 C 0.077 3.923 11 C -0.166 4.166 12 C 0.133 3.867 13 H 0.107 0.893 14 C -0.144 4.144 15 C 0.178 3.822 16 N -0.613 5.613 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.048 4.048 20 N -0.940 5.940 21 Si 0.968 3.032 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.285 1.285 25 C 0.125 3.875 26 S 0.263 5.737 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.004 0.996 43 H 0.247 0.753 44 H 0.041 0.959 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 -9.874 14.409 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.342 4.342 4 C -0.194 4.194 5 C -0.084 4.084 6 C -0.430 4.430 7 C 0.374 3.626 8 O -0.461 6.461 9 N -0.311 5.311 10 C -0.047 4.047 11 C -0.224 4.224 12 C 0.029 3.971 13 H 0.124 0.876 14 C -0.183 4.183 15 C 0.054 3.946 16 N -0.340 5.340 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.242 4.242 20 N -0.588 5.588 21 Si 0.797 3.203 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.212 1.212 25 C -0.001 4.001 26 S 0.534 5.466 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.177 0.823 33 H 0.165 0.835 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.539 -9.789 13.023 17.207 hybrid contribution 0.587 0.246 0.481 0.798 sum -4.951 -9.542 13.504 17.261 Atomic orbital electron populations 1.21790 0.93533 1.02985 1.02148 1.20250 0.96718 0.88198 1.04349 1.25511 1.04386 1.03586 1.00690 1.20016 1.05502 0.93327 1.00591 1.20850 0.96056 0.97027 0.94487 1.24462 1.19690 0.99698 0.99143 1.17411 0.76670 0.86807 0.81698 1.90731 1.55400 1.41290 1.58697 1.47727 1.63313 1.14367 1.05721 1.22302 0.98832 0.87096 0.96477 1.22382 0.94795 1.03604 1.01612 1.22138 0.94433 0.84856 0.95695 0.87560 1.23164 0.98929 1.00111 0.96088 1.21181 0.86375 0.95389 0.91687 1.44758 1.12618 1.61525 1.15097 1.19274 0.97616 1.25216 0.95068 0.90302 1.25418 0.97044 1.02041 0.99734 1.70132 1.11493 1.50616 1.26586 0.85321 0.77109 0.78952 0.78907 1.20175 1.22252 1.21179 1.21983 0.94015 0.98282 0.85823 1.84129 1.57775 1.00224 1.04445 0.92370 0.90336 0.93150 0.88610 0.90123 0.82298 0.83453 0.86190 0.90463 0.90193 0.91895 0.92158 0.90933 0.90010 0.93245 0.97731 0.94331 0.94154 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.06 -0.80 6.36 29.85 0.19 -0.61 16 3 C -0.22 -4.48 5.53 24.68 0.14 -4.34 16 4 C -0.17 -3.42 9.99 21.08 0.21 -3.21 16 5 C -0.05 -1.29 10.02 21.72 0.22 -1.08 16 6 C -0.31 -9.32 6.06 24.08 0.15 -9.17 16 7 C 0.58 21.04 7.54 86.42 0.65 21.69 16 8 O -0.58 -23.67 16.25 -4.37 -0.07 -23.74 16 9 N -0.58 -20.78 2.53 -794.90 -2.01 -22.79 16 10 C 0.08 2.68 4.64 86.38 0.40 3.09 16 11 C -0.17 -5.25 8.13 71.98 0.59 -4.66 16 12 C 0.13 4.91 3.64 46.38 0.17 5.07 16 13 H 0.11 3.85 7.05 -2.39 -0.02 3.83 16 14 C -0.14 -5.35 6.08 31.78 0.19 -5.16 16 15 C 0.18 8.16 4.20 86.73 0.36 8.52 16 16 N -0.61 -29.01 1.85 -691.98 -1.28 -30.29 16 17 C -0.24 -12.59 9.75 84.03 0.82 -11.78 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 19 C -0.05 -2.53 5.49 84.86 0.47 -2.06 16 20 N -0.94 -52.02 10.31 21.65 0.22 -51.80 16 21 Si 0.97 43.10 29.55 68.60 2.03 45.13 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.12 5.02 6.36 86.85 0.55 5.58 16 26 S 0.26 6.42 15.37 -56.49 -0.87 5.55 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.12 5.08 4.31 -2.39 -0.01 5.07 16 35 H 0.08 2.45 4.47 -21.34 -0.10 2.35 16 36 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.06 1.80 6.18 -4.21 -0.03 1.78 16 38 H 0.06 2.15 4.83 -2.38 -0.01 2.14 16 39 H 0.07 2.58 7.46 -2.39 -0.02 2.56 16 40 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.05 2.39 4.31 -2.39 -0.01 2.38 16 42 H 0.00 0.23 7.51 -2.39 -0.02 0.22 16 43 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -61.78 352.53 4.73 -57.05 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.90 Total: 20.19 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.81 Total: 0.71 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.07 Total: -104.88 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.07 Total: -23.74 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -0.87 Total: 5.55 kcal Total: -61.78 4.73 -57.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033887526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.968 kcal (2) G-P(sol) polarization free energy of solvation -61.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds