Wall clock time and date at job start Tue Mar 31 2020 13:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47300 * 2 1 4 4 C 1.33820 * 124.52234 * 89.99650 * 3 2 1 5 5 C 1.37467 * 115.09747 * 179.74745 * 4 3 2 6 6 C 1.36646 * 113.30052 * 0.49327 * 5 4 3 7 7 C 1.46579 * 125.46036 * 179.79742 * 6 5 4 8 8 O 1.21711 * 119.99978 * 9.68944 * 7 6 5 9 9 N 1.34775 * 120.00172 * 189.68975 * 7 6 5 10 10 C 1.46493 * 119.99880 * 354.91065 * 9 7 6 11 11 C 1.52999 * 109.47405 * 278.58717 * 10 9 7 12 12 C 1.46503 * 120.00001 * 174.91001 * 9 7 6 13 13 H 1.09003 * 110.63993 * 169.54513 * 12 9 7 14 14 C 1.55154 * 110.72158 * 292.88664 * 12 9 7 15 15 C 1.54906 * 101.58527 * 82.86007 * 14 12 9 16 16 N 1.47427 * 104.82918 * 37.00951 * 15 14 12 17 17 C 1.36939 * 125.64555 * 156.13731 * 16 15 14 18 18 H 1.08007 * 119.99654 * 140.71037 * 17 16 15 19 19 C 1.38806 * 120.00383 * 320.70150 * 17 16 15 20 20 N 1.31621 * 120.00250 * 173.49937 * 19 17 16 21 21 Si 1.86804 * 119.99608 * 353.50920 * 19 17 16 22 22 H 1.48499 * 109.47011 * 89.14428 * 21 19 17 23 23 H 1.48503 * 109.46738 * 209.13847 * 21 19 17 24 24 H 1.48496 * 109.47318 * 329.13608 * 21 19 17 25 25 C 1.47024 * 108.70363 * 335.87340 * 16 15 14 26 26 S 1.70611 * 124.52332 * 270.02451 * 3 2 1 27 27 H 1.09000 * 109.47034 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47337 * 300.00275 * 1 2 3 29 29 H 1.08999 * 109.46676 * 60.00180 * 1 2 3 30 30 H 1.08999 * 109.46827 * 239.99628 * 2 1 3 31 31 H 1.09005 * 109.46671 * 120.00228 * 2 1 3 32 32 H 1.07999 * 122.44511 * 359.97438 * 4 3 2 33 33 H 1.08008 * 123.35020 * 180.29495 * 5 4 3 34 34 H 1.09001 * 109.47291 * 38.58908 * 10 9 7 35 35 H 1.09011 * 109.47165 * 158.58587 * 10 9 7 36 36 H 1.09001 * 109.47052 * 300.00337 * 11 10 9 37 37 H 1.08994 * 109.46888 * 60.00044 * 11 10 9 38 38 H 1.08999 * 109.47230 * 180.02562 * 11 10 9 39 39 H 1.09005 * 111.00349 * 200.93433 * 14 12 9 40 40 H 1.08998 * 111.00364 * 324.78156 * 14 12 9 41 41 H 1.08999 * 110.36660 * 278.17576 * 15 14 12 42 42 H 1.08994 * 110.36870 * 155.84753 * 15 14 12 43 43 H 0.96998 * 120.00009 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.88167 * 120.48259 * 25 16 15 45 45 H 1.09006 * 109.87976 * 241.64392 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7424 3.4125 0.8774 6 6 2.8458 3.7236 -0.4491 7 6 3.2997 5.0088 -0.9883 8 8 3.7879 5.8415 -0.2469 9 7 3.1764 5.2685 -2.3050 10 6 2.6929 4.2271 -3.2149 11 6 3.8472 3.2908 -3.5778 12 6 3.5259 6.5923 -2.8264 13 1 3.5474 6.5826 -3.9162 14 6 2.5372 7.6672 -2.3025 15 6 3.1335 7.9853 -0.9087 16 7 4.5940 7.9218 -1.0997 17 6 5.5286 8.5536 -0.3234 18 1 6.4511 8.0510 -0.0724 19 6 5.2905 9.8399 0.1409 20 7 6.1270 10.3986 0.9897 21 14 3.7826 10.7778 -0.4389 22 1 2.6411 10.4876 0.4655 23 1 4.0693 12.2348 -0.4222 24 1 3.4388 10.3568 -1.8208 25 6 4.8811 7.0628 -2.2578 26 16 2.3542 2.3326 -1.4057 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1439 1.7376 2.0964 33 1 2.9919 4.1023 1.6703 34 1 1.9022 3.6570 -2.7272 35 1 2.3015 4.6895 -4.1211 36 1 4.6380 3.8609 -4.0654 37 1 4.2386 2.8285 -2.6716 38 1 3.4876 2.5162 -4.2551 39 1 2.5453 8.5501 -2.9417 40 1 1.5298 7.2609 -2.2130 41 1 2.8135 7.2404 -0.1801 42 1 2.8360 8.9835 -0.5876 43 1 5.9604 11.2973 1.3144 44 1 5.4240 7.6295 -3.0142 45 1 5.4703 6.2013 -1.9432 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033887527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:25 Heat of formation + Delta-G solvation = 66.412303 kcal Electronic energy + Delta-G solvation = -26300.089373 eV Core-core repulsion = 22832.920415 eV Total energy + Delta-G solvation = -3467.168958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.28306 -38.13433 -36.45960 -35.72296 -33.81583 -32.34528 -30.61946 -29.33583 -28.72180 -27.66519 -25.37930 -24.10232 -23.44701 -22.48607 -21.85560 -20.36201 -19.51575 -18.40673 -17.61791 -16.76658 -16.38941 -16.06448 -15.36801 -15.16606 -15.00921 -14.37786 -14.23477 -14.05634 -13.59748 -13.31934 -13.24877 -13.10309 -12.77218 -12.56830 -12.40739 -12.29077 -12.05477 -11.93536 -11.67932 -11.48823 -11.35639 -11.31224 -11.23765 -10.93054 -10.81985 -10.59347 -10.34372 -10.19947 -9.70369 -9.33952 -9.09486 -8.53084 -8.48460 -8.36709 -8.07515 -6.37805 -5.74533 -3.19463 0.61452 1.52498 1.94977 2.50701 3.11976 3.46988 3.53045 3.55381 3.62300 4.50578 4.59537 4.70088 4.74408 4.78623 4.96338 4.98695 5.16319 5.20776 5.22833 5.30660 5.40810 5.48648 5.50449 5.54728 5.55762 5.61208 5.62649 5.67038 5.72392 5.86970 6.01555 6.06479 6.07918 6.20818 6.26998 6.34877 6.45137 6.46031 6.70007 6.84003 7.02799 7.28444 7.63812 8.24142 8.57250 8.64266 9.10566 9.90079 10.54105 11.41709 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.003961 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.248191 B = 7068.092726 C = 7639.664415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C -0.237 4.237 4 C -0.151 4.151 5 C -0.061 4.061 6 C -0.254 4.254 7 C 0.551 3.449 8 O -0.442 6.442 9 N -0.607 5.607 10 C 0.097 3.903 11 C -0.181 4.181 12 C 0.137 3.863 13 H 0.093 0.907 14 C -0.149 4.149 15 C 0.116 3.884 16 N -0.588 5.588 17 C -0.222 4.222 18 H 0.075 0.925 19 C 0.023 3.977 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.291 1.291 23 H -0.310 1.310 24 H -0.272 1.272 25 C 0.141 3.859 26 S 0.217 5.783 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.032 0.968 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.678 -22.173 -9.464 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.355 4.355 4 C -0.181 4.181 5 C -0.093 4.093 6 C -0.374 4.374 7 C 0.337 3.663 8 O -0.314 6.314 9 N -0.343 5.343 10 C -0.029 4.029 11 C -0.240 4.240 12 C 0.034 3.966 13 H 0.111 0.889 14 C -0.188 4.188 15 C -0.007 4.007 16 N -0.314 5.314 17 C -0.351 4.351 18 H 0.093 0.907 19 C -0.175 4.175 20 N -0.565 5.565 21 Si 0.743 3.257 22 H -0.219 1.219 23 H -0.239 1.239 24 H -0.198 1.198 25 C 0.015 3.985 26 S 0.486 5.514 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.393 -21.846 -10.411 27.188 hybrid contribution -0.824 0.712 1.478 1.836 sum -13.217 -21.133 -8.933 26.478 Atomic orbital electron populations 1.21791 0.94410 1.01823 1.02514 1.20072 0.96066 0.90018 1.02988 1.24921 1.07350 1.02248 1.00982 1.19874 1.04716 0.94224 0.99278 1.20740 0.96841 0.96266 0.95473 1.24829 1.15518 0.99178 0.97847 1.17096 0.81437 0.85371 0.82365 1.91156 1.39205 1.43341 1.57703 1.47767 1.67352 1.12661 1.06474 1.21795 0.96456 0.90008 0.94635 1.22456 0.99361 0.99648 1.02490 1.22121 0.96718 0.80721 0.97044 0.88922 1.23302 0.97705 0.98102 0.99738 1.22329 0.86843 0.97744 0.93826 1.44192 1.00526 1.56582 1.30132 1.18474 0.98757 0.93994 1.23886 0.90701 1.25423 0.97554 0.96070 0.98453 1.69755 1.37583 1.15478 1.33676 0.86455 0.82665 0.77132 0.79486 1.21941 1.23911 1.19792 1.21529 0.92556 0.94274 0.90170 1.83560 1.60189 1.02018 1.05583 0.92163 0.92274 0.92490 0.91005 0.90407 0.84822 0.83138 0.90600 0.89067 0.91418 0.91524 0.91098 0.90761 0.91755 0.92059 0.95858 0.92983 0.94984 0.95240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 37.16 0.37 -0.62 16 2 C -0.05 -0.40 6.36 -27.88 -0.18 -0.57 16 3 C -0.24 -2.44 5.53 -35.86 -0.20 -2.64 16 4 C -0.15 -1.76 9.99 -41.41 -0.41 -2.18 16 5 C -0.06 -0.87 10.02 -40.44 -0.41 -1.28 16 6 C -0.25 -3.73 6.12 -36.80 -0.23 -3.96 16 7 C 0.55 9.81 6.70 -12.90 -0.09 9.72 16 8 O -0.44 -10.12 10.17 5.18 0.05 -10.06 16 9 N -0.61 -9.07 2.53 -165.59 -0.42 -9.49 16 10 C 0.10 0.98 5.68 -4.05 -0.02 0.96 16 11 C -0.18 -1.64 8.95 37.16 0.33 -1.30 16 12 C 0.14 2.28 3.68 -66.10 -0.24 2.03 16 13 H 0.09 1.21 7.87 -51.93 -0.41 0.80 16 14 C -0.15 -2.75 6.62 -24.59 -0.16 -2.91 16 15 C 0.12 2.79 5.00 -2.53 -0.01 2.78 16 16 N -0.59 -15.47 1.88 -170.07 -0.32 -15.79 16 17 C -0.22 -6.87 10.56 -15.06 -0.16 -7.03 16 18 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 19 C 0.02 0.73 5.50 -17.43 -0.10 0.63 16 20 N -0.92 -30.23 13.97 55.49 0.78 -29.45 16 21 Si 0.91 24.63 24.63 -169.99 -4.19 20.44 16 22 H -0.29 -7.83 6.91 56.52 0.39 -7.44 16 23 H -0.31 -8.42 7.11 56.52 0.40 -8.01 16 24 H -0.27 -7.00 6.37 56.52 0.36 -6.64 16 25 C 0.14 3.04 6.02 -3.06 -0.02 3.02 16 26 S 0.22 2.24 15.42 -107.50 -1.66 0.58 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.15 2.30 8.06 -52.48 -0.42 1.88 16 34 H 0.08 0.73 4.38 -21.74 -0.10 0.64 16 35 H 0.09 0.73 7.88 -51.92 -0.41 0.32 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.70 6.11 -47.84 -0.29 0.41 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 1.35 7.79 -51.93 -0.40 0.94 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.56 5.13 -53.84 -0.28 1.28 16 42 H 0.02 0.62 2.77 -51.93 -0.14 0.47 16 43 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.03 0.67 7.43 -51.93 -0.39 0.29 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -36.32 350.75 -8.67 -44.99 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.68 Total: -3.16 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.52 Total: -3.35 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.04 Total: -54.73 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.05 Total: -10.06 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.19 Total: 20.44 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.66 Total: 0.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.32 -8.67 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033887527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.403 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds