Wall clock time and date at job start Tue Mar 31 2020 13:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47300 * 2 1 4 4 C 1.33820 * 124.52234 * 89.99650 * 3 2 1 5 5 C 1.37467 * 115.09747 * 179.74745 * 4 3 2 6 6 C 1.36646 * 113.30052 * 0.49327 * 5 4 3 7 7 C 1.46579 * 125.46036 * 179.79742 * 6 5 4 8 8 O 1.21711 * 119.99978 * 9.68944 * 7 6 5 9 9 N 1.34775 * 120.00172 * 189.68975 * 7 6 5 10 10 C 1.46493 * 119.99880 * 354.91065 * 9 7 6 11 11 C 1.52999 * 109.47405 * 278.58717 * 10 9 7 12 12 C 1.46503 * 120.00001 * 174.91001 * 9 7 6 13 13 H 1.09003 * 110.63993 * 169.54513 * 12 9 7 14 14 C 1.55154 * 110.72158 * 292.88664 * 12 9 7 15 15 C 1.54906 * 101.58527 * 82.86007 * 14 12 9 16 16 N 1.47427 * 104.82918 * 37.00951 * 15 14 12 17 17 C 1.36939 * 125.64555 * 156.13731 * 16 15 14 18 18 H 1.08007 * 119.99654 * 140.71037 * 17 16 15 19 19 C 1.38806 * 120.00383 * 320.70150 * 17 16 15 20 20 N 1.31621 * 120.00250 * 173.49937 * 19 17 16 21 21 Si 1.86804 * 119.99608 * 353.50920 * 19 17 16 22 22 H 1.48499 * 109.47011 * 89.14428 * 21 19 17 23 23 H 1.48503 * 109.46738 * 209.13847 * 21 19 17 24 24 H 1.48496 * 109.47318 * 329.13608 * 21 19 17 25 25 C 1.47024 * 108.70363 * 335.87340 * 16 15 14 26 26 S 1.70611 * 124.52332 * 270.02451 * 3 2 1 27 27 H 1.09000 * 109.47034 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47337 * 300.00275 * 1 2 3 29 29 H 1.08999 * 109.46676 * 60.00180 * 1 2 3 30 30 H 1.08999 * 109.46827 * 239.99628 * 2 1 3 31 31 H 1.09005 * 109.46671 * 120.00228 * 2 1 3 32 32 H 1.07999 * 122.44511 * 359.97438 * 4 3 2 33 33 H 1.08008 * 123.35020 * 180.29495 * 5 4 3 34 34 H 1.09001 * 109.47291 * 38.58908 * 10 9 7 35 35 H 1.09011 * 109.47165 * 158.58587 * 10 9 7 36 36 H 1.09001 * 109.47052 * 300.00337 * 11 10 9 37 37 H 1.08994 * 109.46888 * 60.00044 * 11 10 9 38 38 H 1.08999 * 109.47230 * 180.02562 * 11 10 9 39 39 H 1.09005 * 111.00349 * 200.93433 * 14 12 9 40 40 H 1.08998 * 111.00364 * 324.78156 * 14 12 9 41 41 H 1.08999 * 110.36660 * 278.17576 * 15 14 12 42 42 H 1.08994 * 110.36870 * 155.84753 * 15 14 12 43 43 H 0.96998 * 120.00009 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.88167 * 120.48259 * 25 16 15 45 45 H 1.09006 * 109.87976 * 241.64392 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7424 3.4125 0.8774 6 6 2.8458 3.7236 -0.4491 7 6 3.2997 5.0088 -0.9883 8 8 3.7879 5.8415 -0.2469 9 7 3.1764 5.2685 -2.3050 10 6 2.6929 4.2271 -3.2149 11 6 3.8472 3.2908 -3.5778 12 6 3.5259 6.5923 -2.8264 13 1 3.5474 6.5826 -3.9162 14 6 2.5372 7.6672 -2.3025 15 6 3.1335 7.9853 -0.9087 16 7 4.5940 7.9218 -1.0997 17 6 5.5286 8.5536 -0.3234 18 1 6.4511 8.0510 -0.0724 19 6 5.2905 9.8399 0.1409 20 7 6.1270 10.3986 0.9897 21 14 3.7826 10.7778 -0.4389 22 1 2.6411 10.4876 0.4655 23 1 4.0693 12.2348 -0.4222 24 1 3.4388 10.3568 -1.8208 25 6 4.8811 7.0628 -2.2578 26 16 2.3542 2.3326 -1.4057 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1439 1.7376 2.0964 33 1 2.9919 4.1023 1.6703 34 1 1.9022 3.6570 -2.7272 35 1 2.3015 4.6895 -4.1211 36 1 4.6380 3.8609 -4.0654 37 1 4.2386 2.8285 -2.6716 38 1 3.4876 2.5162 -4.2551 39 1 2.5453 8.5501 -2.9417 40 1 1.5298 7.2609 -2.2130 41 1 2.8135 7.2404 -0.1801 42 1 2.8360 8.9835 -0.5876 43 1 5.9604 11.2973 1.3144 44 1 5.4240 7.6295 -3.0142 45 1 5.4703 6.2013 -1.9432 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033887527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:24 Heat of formation + Delta-G solvation = 42.146388 kcal Electronic energy + Delta-G solvation = -26301.141622 eV Core-core repulsion = 22832.920415 eV Total energy + Delta-G solvation = -3468.221207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64061 -39.15818 -38.02074 -36.96632 -34.72991 -34.30706 -32.14913 -30.75342 -29.98193 -29.07280 -26.57500 -25.86610 -24.36548 -23.34400 -22.95799 -22.31285 -20.80120 -19.47232 -19.01385 -18.65795 -17.82882 -17.34219 -16.79767 -16.49817 -16.15600 -15.47675 -15.30604 -15.09612 -14.93974 -14.85570 -14.71006 -14.32653 -14.10585 -13.89221 -13.54334 -13.26143 -13.19445 -13.18352 -12.98299 -12.86666 -12.76277 -12.44727 -12.39014 -12.29363 -12.15357 -11.93720 -11.81458 -11.76478 -11.37949 -11.20730 -10.78755 -10.54328 -9.65043 -9.46973 -9.18833 -8.51627 -8.15519 -5.58876 -0.40987 0.56689 1.03320 1.28038 1.34354 1.46913 1.49465 1.97519 2.28367 2.42101 3.10173 3.49013 3.55811 3.79637 3.80796 3.94043 3.98866 4.17177 4.18869 4.28975 4.38349 4.43900 4.49024 4.53955 4.54853 4.64390 4.74042 4.82927 4.89993 4.92131 4.94747 4.95779 5.02689 5.07427 5.09798 5.19418 5.28171 5.37442 5.37810 5.44132 5.49765 5.72310 5.94408 6.15003 6.44113 6.90823 7.34914 7.58249 8.29213 9.04122 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.003961 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.248191 B = 7068.092726 C = 7639.664415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.228 4.228 4 C -0.169 4.169 5 C -0.075 4.075 6 C -0.300 4.300 7 C 0.548 3.452 8 O -0.515 6.515 9 N -0.602 5.602 10 C 0.089 3.911 11 C -0.181 4.181 12 C 0.152 3.848 13 H 0.149 0.851 14 C -0.136 4.136 15 C 0.106 3.894 16 N -0.602 5.602 17 C -0.222 4.222 18 H 0.021 0.979 19 C -0.040 4.040 20 N -0.970 5.970 21 Si 0.983 3.017 22 H -0.292 1.292 23 H -0.309 1.309 24 H -0.244 1.244 25 C 0.136 3.864 26 S 0.308 5.692 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.004 0.996 43 H 0.262 0.738 44 H 0.038 0.962 45 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 -25.022 -13.650 32.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.347 4.347 4 C -0.198 4.198 5 C -0.109 4.109 6 C -0.420 4.420 7 C 0.337 3.663 8 O -0.392 6.392 9 N -0.336 5.336 10 C -0.034 4.034 11 C -0.239 4.239 12 C 0.048 3.952 13 H 0.167 0.833 14 C -0.175 4.175 15 C -0.017 4.017 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.038 0.962 19 C -0.233 4.233 20 N -0.616 5.616 21 Si 0.814 3.186 22 H -0.220 1.220 23 H -0.238 1.238 24 H -0.168 1.168 25 C 0.010 3.990 26 S 0.578 5.422 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -15.914 -24.766 -14.678 32.895 hybrid contribution 0.323 1.308 2.830 3.134 sum -15.591 -23.459 -11.848 30.558 Atomic orbital electron populations 1.21798 0.93468 1.03022 1.02184 1.20250 0.96736 0.87947 1.04429 1.25472 1.04872 1.03534 1.00830 1.19891 1.05935 0.93304 1.00703 1.20743 0.97699 0.97230 0.95219 1.24694 1.18022 1.00339 0.98975 1.17609 0.80055 0.85695 0.82990 1.91118 1.42618 1.45989 1.59495 1.47885 1.66237 1.13243 1.06196 1.22208 0.96943 0.89293 0.95002 1.22470 0.98905 1.00266 1.02292 1.22096 0.92585 0.81032 0.99465 0.83340 1.23242 0.99027 0.99351 0.95884 1.22426 0.85617 0.96090 0.97559 1.44255 1.00995 1.56593 1.30993 1.18290 0.98196 0.94224 1.24507 0.96155 1.26207 1.01452 0.97049 0.98632 1.69923 1.40263 1.16023 1.35438 0.85266 0.78085 0.75046 0.80221 1.22030 1.23812 1.16783 1.21650 0.95899 0.92683 0.88769 1.82982 1.57600 0.98199 1.03433 0.90273 0.93199 0.92280 0.89070 0.89558 0.83643 0.86130 0.89857 0.85162 0.91831 0.93516 0.87377 0.89425 0.88865 0.93725 0.97872 0.92933 0.94393 0.97717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.90 71.98 0.71 -0.72 16 2 C -0.05 -0.62 6.36 29.85 0.19 -0.43 16 3 C -0.23 -4.13 5.53 24.68 0.14 -3.99 16 4 C -0.17 -3.90 9.99 21.08 0.21 -3.69 16 5 C -0.07 -2.29 10.02 21.71 0.22 -2.07 16 6 C -0.30 -8.89 6.12 24.07 0.15 -8.74 16 7 C 0.55 19.84 6.70 86.42 0.58 20.42 16 8 O -0.51 -25.23 10.17 -4.38 -0.04 -25.27 16 9 N -0.60 -16.55 2.53 -796.02 -2.01 -18.56 16 10 C 0.09 1.37 5.68 86.38 0.49 1.86 16 11 C -0.18 -2.48 8.95 71.98 0.64 -1.84 16 12 C 0.15 4.56 3.68 46.18 0.17 4.73 16 13 H 0.15 2.92 7.87 -2.39 -0.02 2.91 16 14 C -0.14 -4.58 6.62 31.98 0.21 -4.36 16 15 C 0.11 5.14 5.00 86.85 0.43 5.58 16 16 N -0.60 -32.83 1.88 -691.99 -1.30 -34.13 16 17 C -0.22 -14.65 10.56 84.03 0.89 -13.76 16 18 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 19 C -0.04 -2.60 5.50 84.86 0.47 -2.14 16 20 N -0.97 -67.30 13.97 21.65 0.30 -66.99 16 21 Si 0.98 52.58 24.63 68.60 1.69 54.27 16 22 H -0.29 -15.49 6.91 99.48 0.69 -14.80 16 23 H -0.31 -16.25 7.11 99.48 0.71 -15.55 16 24 H -0.24 -11.76 6.37 99.48 0.63 -11.13 16 25 C 0.14 5.88 6.02 86.73 0.52 6.41 16 26 S 0.31 5.36 15.42 -56.49 -0.87 4.49 16 27 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.08 1.18 4.38 -21.58 -0.09 1.09 16 35 H 0.13 1.13 7.88 -2.38 -0.02 1.11 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.84 6.11 -5.00 -0.03 0.81 16 38 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 2.76 7.79 -2.38 -0.02 2.74 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.05 2.38 5.13 -32.69 -0.17 2.21 16 42 H 0.00 0.19 2.77 -2.39 -0.01 0.19 16 43 H 0.26 17.07 8.31 -92.71 -0.77 16.29 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.00 0.23 7.43 -2.38 -0.02 0.21 16 Total: -1.00 -89.67 350.75 4.42 -85.24 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 0.64 Total: 3.70 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 6.02 Total: -2.75 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -3.01 Total: -119.68 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.04 Total: -25.27 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 1.69 Total: 54.27 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -0.87 Total: 4.49 kcal Total: -89.67 4.42 -85.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033887527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.389 kcal (2) G-P(sol) polarization free energy of solvation -89.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds