Wall clock time and date at job start Tue Mar 31 2020 13:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47028 * 2 1 4 4 C 1.33813 * 124.52340 * 89.99862 * 3 2 1 5 5 C 1.37477 * 115.10002 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29822 * 0.02562 * 5 4 3 7 7 C 1.46580 * 125.46094 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99606 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00185 * 179.97438 * 7 6 5 10 10 C 1.46504 * 120.00048 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.24661 * 324.65450 * 10 9 7 12 12 C 1.54848 * 109.35752 * 204.99495 * 10 9 7 13 13 C 1.50127 * 110.81324 * 200.92532 * 12 10 9 14 14 C 1.52524 * 105.41056 * 97.69134 * 13 12 10 15 15 C 1.46246 * 114.27473 * 270.58696 * 14 13 12 16 16 N 1.50174 * 107.52763 * 58.41316 * 15 14 13 17 17 C 1.36931 * 120.53639 * 109.56731 * 16 15 14 18 18 H 1.08004 * 119.99977 * 172.84410 * 17 16 15 19 19 C 1.38819 * 120.00300 * 352.84291 * 17 16 15 20 20 N 1.31616 * 119.99532 * 319.30052 * 19 17 16 21 21 Si 1.86802 * 120.00013 * 139.29464 * 19 17 16 22 22 H 1.48494 * 109.46784 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47014 * 60.00199 * 21 19 17 24 24 H 1.48496 * 109.47313 * 300.00228 * 21 19 17 25 25 C 1.43432 * 118.92662 * 289.83617 * 16 15 14 26 26 S 1.70614 * 124.51937 * 270.26957 * 3 2 1 27 27 H 1.08997 * 109.47138 * 59.99876 * 1 2 3 28 28 H 1.09004 * 109.46783 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46861 * 300.00111 * 1 2 3 30 30 H 1.08991 * 109.47227 * 239.99941 * 2 1 3 31 31 H 1.09004 * 109.47153 * 119.99427 * 2 1 3 32 32 H 1.08001 * 122.45082 * 359.97438 * 4 3 2 33 33 H 1.07999 * 123.35228 * 180.02562 * 5 4 3 34 34 H 0.97006 * 120.00326 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.20441 * 80.58964 * 12 10 9 36 36 H 1.08999 * 109.20970 * 321.27605 * 12 10 9 37 37 H 1.08992 * 110.25071 * 338.71747 * 13 12 10 38 38 H 1.09001 * 110.24845 * 216.65527 * 13 12 10 39 39 H 1.08999 * 108.52632 * 149.35177 * 14 13 12 40 40 H 1.08994 * 108.40503 * 31.74138 * 14 13 12 41 41 H 1.08994 * 109.84609 * 298.90236 * 15 14 13 42 42 H 1.09005 * 109.90189 * 177.94928 * 15 14 13 43 43 H 0.97000 * 120.00306 * 353.65432 * 20 19 17 44 44 H 1.08998 * 108.16066 * 213.03735 * 25 16 15 45 45 H 1.09004 * 108.15966 * 329.60760 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1359 1.1025 5 6 2.7377 3.4143 0.8774 6 6 2.8469 3.7233 -0.4492 7 6 3.3011 5.0084 -0.9885 8 8 3.6186 5.9075 -0.2323 9 7 3.3673 5.1942 -2.3217 10 6 3.8208 6.4788 -2.8606 11 1 3.4731 7.2832 -2.2125 12 6 3.2360 6.6747 -4.2810 13 6 4.0411 7.6774 -5.0557 14 6 4.9921 6.8542 -5.9184 15 6 6.2693 6.5437 -5.2772 16 7 5.9692 5.7932 -4.0115 17 6 6.2638 4.4600 -3.9068 18 1 6.1528 3.9553 -2.9584 19 6 6.7051 3.7571 -5.0195 20 7 6.1552 3.9740 -6.1955 21 14 8.0795 2.5037 -4.8479 22 1 8.3633 1.8959 -6.1727 23 1 7.6659 1.4431 -3.8945 24 1 9.3023 3.1762 -4.3403 25 6 5.3638 6.4940 -2.9162 26 16 2.3484 2.3346 -1.4057 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.1439 1.7377 2.0964 33 1 2.9826 4.1057 1.6701 34 1 3.1147 4.4774 -2.9245 35 1 2.2074 7.0263 -4.1998 36 1 3.2477 5.7208 -4.8083 37 1 4.6052 8.3151 -4.3752 38 1 3.3871 8.2807 -5.6854 39 1 5.1911 7.4055 -6.8374 40 1 4.4982 5.9179 -6.1777 41 1 6.7999 7.4666 -5.0432 42 1 6.8761 5.9257 -5.9389 43 1 5.3820 4.5550 -6.2696 44 1 5.7366 6.0608 -1.9881 45 1 5.6910 7.5330 -2.9553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034294422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:49 Heat of formation + Delta-G solvation = 15.851287 kcal Electronic energy + Delta-G solvation = -25770.338277 eV Core-core repulsion = 22300.976829 eV Total energy + Delta-G solvation = -3469.361448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.61045 -38.29464 -37.52841 -34.46299 -33.82331 -33.29553 -31.21267 -30.24146 -28.59574 -26.17366 -25.24010 -24.10638 -22.89414 -22.40354 -21.25168 -20.28737 -19.43339 -18.78105 -17.73825 -17.07575 -16.15826 -15.59249 -15.28293 -14.97908 -14.55995 -14.45438 -14.29505 -13.87312 -13.62690 -13.60484 -13.23594 -12.90707 -12.69798 -12.43977 -12.29786 -12.17182 -11.98946 -11.79981 -11.67558 -11.28483 -11.05816 -10.86019 -10.76598 -10.57972 -10.40322 -10.17779 -10.02607 -9.82009 -9.76355 -9.61021 -9.44917 -8.81008 -8.55866 -8.50990 -8.13840 -6.95980 -6.16920 -3.01415 0.61031 1.53407 1.96781 2.47674 3.48808 3.52044 3.59086 3.63903 3.74578 4.52892 4.61430 4.82678 5.04214 5.09727 5.14860 5.21079 5.24056 5.31105 5.39991 5.41595 5.52063 5.61025 5.69118 5.73178 5.93031 5.93417 5.97671 5.99011 6.04267 6.21724 6.24616 6.33502 6.37449 6.41268 6.58862 6.67698 6.68162 6.85809 6.90693 7.05335 7.23386 7.25082 7.90625 8.02572 8.53395 8.57290 9.08076 9.86061 10.30423 11.13395 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.004534 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.549068 B = 6173.619268 C = 7419.176945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.202 4.202 4 C -0.153 4.153 5 C -0.063 4.063 6 C -0.256 4.256 7 C 0.586 3.414 8 O -0.545 6.545 9 N -0.698 5.698 10 C 0.115 3.885 11 H 0.077 0.923 12 C -0.112 4.112 13 C -0.110 4.110 14 C -0.135 4.135 15 C 0.129 3.871 16 N -0.586 5.586 17 C -0.352 4.352 18 H 0.063 0.937 19 C -0.014 4.014 20 N -0.901 5.901 21 Si 1.033 2.967 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.296 1.296 25 C 0.153 3.847 26 S 0.213 5.787 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.397 0.603 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.024 0.976 42 H 0.095 0.905 43 H 0.273 0.727 44 H 0.042 0.958 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -2.936 8.075 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.322 4.322 4 C -0.184 4.184 5 C -0.096 4.096 6 C -0.377 4.377 7 C 0.372 3.628 8 O -0.425 6.425 9 N -0.346 5.346 10 C 0.007 3.993 11 H 0.095 0.905 12 C -0.150 4.150 13 C -0.148 4.148 14 C -0.175 4.175 15 C 0.005 3.995 16 N -0.308 5.308 17 C -0.479 4.479 18 H 0.081 0.919 19 C -0.217 4.217 20 N -0.543 5.543 21 Si 0.863 3.137 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.223 1.223 25 C 0.022 3.978 26 S 0.481 5.519 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.231 0.769 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.099 -3.639 6.159 12.376 hybrid contribution -1.068 0.782 2.259 2.618 sum -11.167 -2.857 8.418 14.273 Atomic orbital electron populations 1.21800 0.94240 1.01989 1.02526 1.20130 0.96193 0.89588 1.03505 1.24257 1.07727 1.02086 0.98138 1.19882 1.05087 0.94168 0.99308 1.20674 0.97526 0.96239 0.95174 1.24735 1.15359 0.99568 0.98006 1.16889 0.77863 0.85442 0.82632 1.90774 1.50639 1.42843 1.58222 1.45892 1.66154 1.16967 1.05617 1.22840 0.99054 0.83916 0.93487 0.90487 1.21680 0.97695 1.00408 0.95256 1.20941 0.98085 0.97258 0.98489 1.21098 0.98878 0.99697 0.97794 1.20603 0.94965 0.94891 0.89036 1.44379 1.67753 1.06995 1.11648 1.19888 1.44920 0.86196 0.96917 0.91885 1.25366 1.02894 1.00993 0.92422 1.70873 1.21324 1.35309 1.26814 0.83988 0.78280 0.76075 0.75337 1.21352 1.22191 1.22327 1.20623 0.89312 0.95550 0.92267 1.83247 1.58857 1.02626 1.07124 0.92369 0.91997 0.92290 0.90548 0.89965 0.84249 0.83261 0.76914 0.93569 0.91013 0.91681 0.92573 0.94161 0.91034 0.95794 0.88711 0.91427 0.94007 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 37.16 0.37 -0.78 16 2 C -0.06 -0.50 6.37 -27.88 -0.18 -0.67 16 3 C -0.20 -2.40 5.53 -35.86 -0.20 -2.60 16 4 C -0.15 -1.85 9.99 -41.41 -0.41 -2.26 16 5 C -0.06 -0.91 10.01 -40.43 -0.40 -1.31 16 6 C -0.26 -4.17 6.45 -36.79 -0.24 -4.41 16 7 C 0.59 11.15 7.59 -12.90 -0.10 11.05 16 8 O -0.54 -11.73 16.50 5.19 0.09 -11.65 16 9 N -0.70 -12.91 5.08 -53.48 -0.27 -13.18 16 10 C 0.11 2.14 2.91 -66.22 -0.19 1.94 16 11 H 0.08 1.43 7.57 -51.93 -0.39 1.03 16 12 C -0.11 -1.91 5.23 -27.19 -0.14 -2.05 16 13 C -0.11 -1.81 5.76 -28.40 -0.16 -1.97 16 14 C -0.14 -2.61 4.96 -30.19 -0.15 -2.76 16 15 C 0.13 2.86 5.22 -5.20 -0.03 2.83 16 16 N -0.59 -13.87 2.62 -175.39 -0.46 -14.33 16 17 C -0.35 -9.30 9.46 -15.06 -0.14 -9.44 16 18 H 0.06 1.76 8.05 -52.48 -0.42 1.34 16 19 C -0.01 -0.39 4.53 -17.43 -0.08 -0.47 16 20 N -0.90 -24.97 11.99 55.49 0.67 -24.30 16 21 Si 1.03 24.65 30.06 -169.99 -5.11 19.54 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.15 3.26 4.75 -4.93 -0.02 3.24 16 26 S 0.21 2.94 22.10 -107.50 -2.38 0.56 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.40 7.14 7.56 -40.82 -0.31 6.83 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.37 6.58 -51.93 -0.34 1.03 16 37 H 0.06 1.07 6.28 -51.93 -0.33 0.75 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.54 4.65 -51.93 -0.24 1.30 16 41 H 0.02 0.50 8.13 -51.93 -0.42 0.07 16 42 H 0.09 2.39 5.61 -51.93 -0.29 2.09 16 43 H 0.27 7.33 4.95 -40.82 -0.20 7.13 16 44 H 0.04 0.99 7.81 -51.93 -0.41 0.59 16 45 H 0.04 0.78 6.89 -51.93 -0.36 0.42 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -29.79 363.65 -10.80 -40.60 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.74 Total: 6.95 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.08 Total: -9.66 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.07 Total: -51.81 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.11 Total: 19.54 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.38 Total: 0.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.79 -10.80 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034294422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.447 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds