Wall clock time and date at job start Tue Mar 31 2020 13:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47028 * 2 1 4 4 C 1.33813 * 124.52340 * 89.99862 * 3 2 1 5 5 C 1.37477 * 115.10002 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29822 * 0.02562 * 5 4 3 7 7 C 1.46580 * 125.46094 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99606 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00185 * 179.97438 * 7 6 5 10 10 C 1.46504 * 120.00048 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.24661 * 324.65450 * 10 9 7 12 12 C 1.54848 * 109.35752 * 204.99495 * 10 9 7 13 13 C 1.50127 * 110.81324 * 200.92532 * 12 10 9 14 14 C 1.52524 * 105.41056 * 97.69134 * 13 12 10 15 15 C 1.46246 * 114.27473 * 270.58696 * 14 13 12 16 16 N 1.50174 * 107.52763 * 58.41316 * 15 14 13 17 17 C 1.36931 * 120.53639 * 109.56731 * 16 15 14 18 18 H 1.08004 * 119.99977 * 172.84410 * 17 16 15 19 19 C 1.38819 * 120.00300 * 352.84291 * 17 16 15 20 20 N 1.31616 * 119.99532 * 319.30052 * 19 17 16 21 21 Si 1.86802 * 120.00013 * 139.29464 * 19 17 16 22 22 H 1.48494 * 109.46784 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47014 * 60.00199 * 21 19 17 24 24 H 1.48496 * 109.47313 * 300.00228 * 21 19 17 25 25 C 1.43432 * 118.92662 * 289.83617 * 16 15 14 26 26 S 1.70614 * 124.51937 * 270.26957 * 3 2 1 27 27 H 1.08997 * 109.47138 * 59.99876 * 1 2 3 28 28 H 1.09004 * 109.46783 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46861 * 300.00111 * 1 2 3 30 30 H 1.08991 * 109.47227 * 239.99941 * 2 1 3 31 31 H 1.09004 * 109.47153 * 119.99427 * 2 1 3 32 32 H 1.08001 * 122.45082 * 359.97438 * 4 3 2 33 33 H 1.07999 * 123.35228 * 180.02562 * 5 4 3 34 34 H 0.97006 * 120.00326 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.20441 * 80.58964 * 12 10 9 36 36 H 1.08999 * 109.20970 * 321.27605 * 12 10 9 37 37 H 1.08992 * 110.25071 * 338.71747 * 13 12 10 38 38 H 1.09001 * 110.24845 * 216.65527 * 13 12 10 39 39 H 1.08999 * 108.52632 * 149.35177 * 14 13 12 40 40 H 1.08994 * 108.40503 * 31.74138 * 14 13 12 41 41 H 1.08994 * 109.84609 * 298.90236 * 15 14 13 42 42 H 1.09005 * 109.90189 * 177.94928 * 15 14 13 43 43 H 0.97000 * 120.00306 * 353.65432 * 20 19 17 44 44 H 1.08998 * 108.16066 * 213.03735 * 25 16 15 45 45 H 1.09004 * 108.15966 * 329.60760 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1359 1.1025 5 6 2.7377 3.4143 0.8774 6 6 2.8469 3.7233 -0.4492 7 6 3.3011 5.0084 -0.9885 8 8 3.6186 5.9075 -0.2323 9 7 3.3673 5.1942 -2.3217 10 6 3.8208 6.4788 -2.8606 11 1 3.4731 7.2832 -2.2125 12 6 3.2360 6.6747 -4.2810 13 6 4.0411 7.6774 -5.0557 14 6 4.9921 6.8542 -5.9184 15 6 6.2693 6.5437 -5.2772 16 7 5.9692 5.7932 -4.0115 17 6 6.2638 4.4600 -3.9068 18 1 6.1528 3.9553 -2.9584 19 6 6.7051 3.7571 -5.0195 20 7 6.1552 3.9740 -6.1955 21 14 8.0795 2.5037 -4.8479 22 1 8.3633 1.8959 -6.1727 23 1 7.6659 1.4431 -3.8945 24 1 9.3023 3.1762 -4.3403 25 6 5.3638 6.4940 -2.9162 26 16 2.3484 2.3346 -1.4057 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.1439 1.7377 2.0964 33 1 2.9826 4.1057 1.6701 34 1 3.1147 4.4774 -2.9245 35 1 2.2074 7.0263 -4.1998 36 1 3.2477 5.7208 -4.8083 37 1 4.6052 8.3151 -4.3752 38 1 3.3871 8.2807 -5.6854 39 1 5.1911 7.4055 -6.8374 40 1 4.4982 5.9179 -6.1777 41 1 6.7999 7.4666 -5.0432 42 1 6.8761 5.9257 -5.9389 43 1 5.3820 4.5550 -6.2696 44 1 5.7366 6.0608 -1.9881 45 1 5.6910 7.5330 -2.9553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034294422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:48 Heat of formation + Delta-G solvation = -0.176719 kcal Electronic energy + Delta-G solvation = -25771.033304 eV Core-core repulsion = 22300.976829 eV Total energy + Delta-G solvation = -3470.056475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10184 -39.72114 -38.77199 -36.12972 -34.94810 -34.67636 -33.03847 -31.84782 -29.69842 -27.86354 -26.47910 -25.53883 -24.61971 -23.28729 -22.69552 -21.81390 -21.02600 -20.06039 -19.08982 -18.84691 -17.44885 -16.95432 -16.78506 -16.44248 -16.07313 -15.87753 -15.56048 -15.28909 -15.17132 -14.86345 -14.41052 -14.33808 -13.99893 -13.82251 -13.79193 -13.49076 -13.32095 -12.85724 -12.77685 -12.58107 -12.47102 -12.38408 -12.18704 -12.08092 -11.93741 -11.77446 -11.68609 -11.55235 -11.30187 -11.19846 -11.11706 -10.42879 -10.07975 -9.67233 -9.58899 -8.86782 -8.27156 -5.07081 -0.52251 0.43380 0.90220 1.37491 1.58056 1.63865 1.83226 2.09852 2.24528 2.67090 3.13816 3.44879 3.67511 3.72775 3.84932 3.98443 4.12382 4.21660 4.32308 4.36786 4.38876 4.41155 4.45135 4.46377 4.65982 4.72013 4.78296 4.89420 4.91026 5.02184 5.04180 5.09275 5.11784 5.13307 5.18464 5.27625 5.32858 5.38324 5.41844 5.48274 5.55003 5.62335 5.91803 6.44068 6.50557 7.09406 7.10180 7.87379 8.31555 9.05420 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.004534 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.549068 B = 6173.619268 C = 7419.176945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.159 4.159 5 C -0.054 4.054 6 C -0.300 4.300 7 C 0.583 3.417 8 O -0.580 6.580 9 N -0.699 5.699 10 C 0.120 3.880 11 H 0.082 0.918 12 C -0.103 4.103 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.131 3.869 16 N -0.598 5.598 17 C -0.351 4.351 18 H 0.040 0.960 19 C -0.052 4.052 20 N -0.922 5.922 21 Si 1.075 2.925 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.294 1.294 25 C 0.158 3.842 26 S 0.204 5.796 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.271 0.729 44 H 0.008 0.992 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.566 -3.622 8.736 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 C -0.302 4.302 4 C -0.188 4.188 5 C -0.088 4.088 6 C -0.420 4.420 7 C 0.371 3.629 8 O -0.463 6.463 9 N -0.346 5.346 10 C 0.012 3.988 11 H 0.100 0.900 12 C -0.141 4.141 13 C -0.139 4.139 14 C -0.167 4.167 15 C 0.008 3.992 16 N -0.320 5.320 17 C -0.479 4.479 18 H 0.058 0.942 19 C -0.251 4.251 20 N -0.565 5.565 21 Si 0.903 3.097 22 H -0.217 1.217 23 H -0.211 1.211 24 H -0.222 1.222 25 C 0.028 3.972 26 S 0.472 5.528 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.190 0.810 33 H 0.168 0.832 34 H 0.232 0.768 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.026 0.974 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.437 -4.318 6.817 13.997 hybrid contribution -0.669 0.953 2.135 2.432 sum -12.106 -3.365 8.952 15.428 Atomic orbital electron populations 1.21796 0.93053 1.03208 1.02281 1.20324 0.97089 0.87528 1.04722 1.24727 1.05500 1.03081 0.96895 1.20128 1.04757 0.93055 1.00886 1.20946 0.96081 0.97280 0.94474 1.24563 1.18694 0.99564 0.99201 1.17297 0.77031 0.86169 0.82422 1.90730 1.52388 1.44335 1.58841 1.45901 1.66013 1.16976 1.05733 1.22685 0.96870 0.84315 0.94902 0.90010 1.21611 0.99276 0.99696 0.93547 1.20933 0.97746 0.96853 0.98347 1.20937 0.97660 0.99292 0.98841 1.20566 0.96290 0.94384 0.87958 1.44415 1.68660 1.06209 1.12747 1.19801 1.45056 0.87429 0.95660 0.94196 1.26187 1.04040 1.02594 0.92287 1.70908 1.21981 1.36402 1.27205 0.83379 0.76264 0.74888 0.75152 1.21672 1.21145 1.22159 1.20589 0.91137 0.95500 0.89976 1.83249 1.59062 1.02217 1.08248 0.93213 0.90096 0.91988 0.90227 0.87831 0.81026 0.83175 0.76775 0.90828 0.93240 0.91299 0.89284 0.92377 0.93529 0.94369 0.91923 0.91640 0.97410 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.90 71.98 0.71 -1.13 16 2 C -0.06 -0.87 6.37 29.85 0.19 -0.68 16 3 C -0.18 -3.96 5.53 24.68 0.14 -3.82 16 4 C -0.16 -3.48 9.99 21.08 0.21 -3.27 16 5 C -0.05 -1.52 10.01 21.72 0.22 -1.30 16 6 C -0.30 -9.94 6.45 24.08 0.16 -9.78 16 7 C 0.58 22.93 7.59 86.42 0.66 23.59 16 8 O -0.58 -25.87 16.50 -4.36 -0.07 -25.94 16 9 N -0.70 -26.58 5.08 -441.35 -2.24 -28.82 16 10 C 0.12 4.48 2.91 46.10 0.13 4.61 16 11 H 0.08 3.00 7.57 -2.39 -0.02 2.99 16 12 C -0.10 -3.39 5.23 30.30 0.16 -3.23 16 13 C -0.10 -3.10 5.76 29.51 0.17 -2.93 16 14 C -0.13 -4.82 4.96 28.36 0.14 -4.68 16 15 C 0.13 5.84 5.22 83.58 0.44 6.28 16 16 N -0.60 -28.82 2.62 -708.82 -1.86 -30.68 16 17 C -0.35 -19.08 9.46 84.04 0.80 -18.29 16 18 H 0.04 2.32 8.05 -2.91 -0.02 2.30 16 19 C -0.05 -2.83 4.53 84.86 0.38 -2.44 16 20 N -0.92 -51.97 11.99 21.65 0.26 -51.71 16 21 Si 1.08 50.67 30.06 68.60 2.06 52.73 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 C 0.16 6.84 4.75 87.42 0.41 7.25 16 26 S 0.20 5.58 22.10 -56.49 -1.25 4.33 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 34 H 0.40 14.85 7.56 -92.70 -0.70 14.15 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.88 6.58 -2.39 -0.02 1.86 16 37 H 0.07 2.09 6.28 -2.39 -0.02 2.08 16 38 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 2.01 4.65 -2.39 -0.01 2.00 16 41 H 0.04 1.56 8.13 -2.39 -0.02 1.54 16 42 H 0.06 3.21 5.61 -2.38 -0.01 3.19 16 43 H 0.27 14.91 4.95 -92.71 -0.46 14.45 16 44 H 0.01 0.38 7.81 -2.39 -0.02 0.36 16 45 H 0.05 2.09 6.89 -2.39 -0.02 2.07 16 Total: -1.00 -66.15 363.65 2.42 -63.72 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.61 Total: 26.20 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.91 Total: -9.83 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -3.84 Total: -111.21 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.07 Total: -25.94 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.06 Total: 52.73 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.25 Total: 4.33 kcal Total: -66.15 2.42 -63.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034294422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.547 kcal (2) G-P(sol) polarization free energy of solvation -66.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds