Wall clock time and date at job start Tue Mar 31 2020 13:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47282 * 2 1 4 4 C 1.33818 * 124.52169 * 89.99588 * 3 2 1 5 5 C 1.37478 * 115.10098 * 179.72920 * 4 3 2 6 6 C 1.36648 * 113.29379 * 0.45314 * 5 4 3 7 7 C 1.46578 * 125.45475 * 179.83650 * 6 5 4 8 8 O 1.21701 * 120.00289 * 359.72486 * 7 6 5 9 9 N 1.34782 * 119.99776 * 179.71797 * 7 6 5 10 10 C 1.46500 * 119.99839 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.26192 * 35.32546 * 10 9 7 12 12 C 1.50884 * 109.36425 * 155.00041 * 10 9 7 13 13 C 1.52565 * 109.37831 * 212.09089 * 12 10 9 14 14 C 1.47098 * 114.32538 * 274.97655 * 13 12 10 15 15 C 1.54869 * 110.32268 * 62.80295 * 14 13 12 16 16 N 1.44581 * 109.59866 * 288.73381 * 15 14 13 17 17 C 1.36937 * 118.64433 * 270.72503 * 16 15 14 18 18 H 1.08000 * 119.99888 * 26.49899 * 17 16 15 19 19 C 1.38808 * 120.00070 * 206.50010 * 17 16 15 20 20 N 1.31621 * 119.99870 * 15.66260 * 19 17 16 21 21 Si 1.86795 * 120.00070 * 195.66198 * 19 17 16 22 22 H 1.48495 * 109.47275 * 89.99969 * 21 19 17 23 23 H 1.48503 * 109.47305 * 210.00071 * 21 19 17 24 24 H 1.48497 * 109.47034 * 329.99893 * 21 19 17 25 25 C 1.47600 * 122.71149 * 90.70253 * 16 15 14 26 26 S 1.70613 * 124.52404 * 269.97289 * 3 2 1 27 27 H 1.09000 * 109.47135 * 60.00066 * 1 2 3 28 28 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47451 * 299.99983 * 1 2 3 30 30 H 1.08993 * 109.47202 * 239.99726 * 2 1 3 31 31 H 1.09004 * 109.46672 * 119.99833 * 2 1 3 32 32 H 1.08005 * 122.44960 * 359.95612 * 4 3 2 33 33 H 1.07996 * 123.35300 * 180.27051 * 5 4 3 34 34 H 0.97000 * 119.99980 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.48767 * 92.11482 * 12 10 9 36 36 H 1.08997 * 109.49016 * 332.07117 * 12 10 9 37 37 H 1.09004 * 108.51428 * 36.22583 * 13 12 10 38 38 H 1.08995 * 108.51377 * 153.72248 * 13 12 10 39 39 H 1.09001 * 109.32788 * 183.06385 * 14 13 12 40 40 H 1.08992 * 109.33041 * 302.71468 * 14 13 12 41 41 H 1.08998 * 109.44539 * 48.77270 * 15 14 13 42 42 H 1.09000 * 109.44774 * 168.69366 * 15 14 13 43 43 H 0.97000 * 120.00069 * 179.97438 * 20 19 17 44 44 H 1.09001 * 108.95052 * 78.57869 * 25 16 15 45 45 H 1.08999 * 108.95056 * 197.20214 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7428 3.4125 0.8775 6 6 2.8473 3.7231 -0.4491 7 6 3.3025 5.0078 -0.9882 8 8 3.6209 5.9067 -0.2320 9 7 3.3687 5.1937 -2.3215 10 6 3.8232 6.4780 -2.8604 11 1 4.5985 6.8859 -2.2118 12 6 4.3876 6.2684 -4.2439 13 6 5.5104 7.2716 -4.4898 14 6 5.0553 8.5839 -4.9739 15 6 4.1570 9.2666 -3.9130 16 7 2.8859 8.5815 -3.8404 17 6 1.8711 8.9918 -4.6632 18 1 2.0989 9.4737 -5.6025 19 6 0.5497 8.7884 -4.2900 20 7 0.2565 8.4934 -3.0412 21 14 -0.8124 8.9334 -5.5600 22 1 -1.0461 7.6086 -6.1887 23 1 -2.0595 9.3940 -4.8980 24 1 -0.4147 9.9130 -6.6027 25 6 2.6371 7.4576 -2.9165 26 16 2.3553 2.3322 -1.4057 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.1435 1.7377 2.0965 33 1 2.9919 4.1023 1.6703 34 1 3.1147 4.4774 -2.9242 35 1 3.6006 6.4149 -4.9837 36 1 4.7805 5.2551 -4.3267 37 1 6.0553 7.4168 -3.5570 38 1 6.1960 6.8503 -5.2250 39 1 5.9213 9.2151 -5.1734 40 1 4.4858 8.4515 -5.8938 41 1 4.6479 9.2248 -2.9407 42 1 3.9929 10.3074 -4.1919 43 1 -0.6669 8.3516 -2.7803 44 1 2.4582 7.8541 -1.9170 45 1 1.7487 6.9187 -3.2457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034294423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:53 Heat of formation + Delta-G solvation = 5.225178 kcal Electronic energy + Delta-G solvation = -25304.010714 eV Core-core repulsion = 21834.188483 eV Total energy + Delta-G solvation = -3469.822231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.61322 -38.20518 -37.37618 -34.37981 -33.89301 -33.51816 -30.79699 -30.35129 -28.53704 -26.09302 -25.30923 -24.20991 -23.14419 -22.46792 -21.20699 -20.16089 -19.24801 -18.90282 -17.76785 -16.63612 -16.17595 -15.59578 -15.30116 -15.07280 -14.54201 -14.44472 -14.09581 -13.97743 -13.73280 -13.33958 -13.20847 -13.08289 -12.68731 -12.42780 -12.37888 -12.08231 -12.00997 -11.74316 -11.35805 -11.32077 -11.11385 -10.97318 -10.90783 -10.70387 -10.42253 -10.23259 -10.14576 -9.93669 -9.77959 -9.65663 -9.46786 -8.76148 -8.63384 -8.49508 -8.34591 -6.62419 -5.73559 -3.18896 0.52554 1.41991 1.84389 2.41430 3.37263 3.43131 3.46019 3.46818 3.57679 4.44750 4.52283 4.74704 4.97864 5.01477 5.17092 5.26977 5.34476 5.35450 5.46814 5.48100 5.53894 5.65048 5.67974 5.71579 5.89640 5.90853 5.97716 6.04431 6.14323 6.22640 6.33575 6.35127 6.49988 6.62961 6.67039 6.68448 6.79526 6.91491 6.98338 7.12846 7.40522 7.77471 7.86060 7.89087 8.49329 8.54819 9.26694 9.93844 10.39294 11.32626 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.003761 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.794165 B = 7443.736680 C = 8617.629626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C -0.200 4.200 4 C -0.151 4.151 5 C -0.060 4.060 6 C -0.253 4.253 7 C 0.586 3.414 8 O -0.527 6.527 9 N -0.712 5.712 10 C 0.120 3.880 11 H 0.075 0.925 12 C -0.116 4.116 13 C -0.098 4.098 14 C -0.148 4.148 15 C 0.154 3.846 16 N -0.587 5.587 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.899 5.899 21 Si 0.899 3.101 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.175 3.825 26 S 0.196 5.804 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.391 0.609 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.046 0.954 43 H 0.253 0.747 44 H 0.032 0.968 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 -17.235 3.653 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.319 4.319 4 C -0.182 4.182 5 C -0.093 4.093 6 C -0.373 4.373 7 C 0.372 3.628 8 O -0.405 6.405 9 N -0.362 5.362 10 C 0.015 3.985 11 H 0.093 0.907 12 C -0.154 4.154 13 C -0.136 4.136 14 C -0.188 4.188 15 C 0.026 3.974 16 N -0.308 5.308 17 C -0.389 4.389 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.543 5.543 21 Si 0.729 3.271 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.048 3.952 26 S 0.464 5.536 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.225 0.775 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.512 -16.862 2.721 17.948 hybrid contribution -0.910 -0.079 0.707 1.154 sum 4.603 -16.941 3.428 17.887 Atomic orbital electron populations 1.21813 0.94093 1.02030 1.02830 1.20123 0.96368 0.89464 1.03294 1.24212 1.07811 1.02036 0.97890 1.19924 1.04642 0.94212 0.99409 1.20737 0.97072 0.96140 0.95318 1.24755 1.15196 0.99392 0.97985 1.16910 0.77934 0.85311 0.82693 1.90828 1.49171 1.42537 1.57965 1.46046 1.67695 1.16698 1.05795 1.21830 0.99392 0.83345 0.93897 0.90654 1.21287 0.99157 0.97684 0.97286 1.20210 0.96927 0.96104 1.00343 1.21504 0.99415 0.96249 1.01630 1.20745 0.86866 0.94713 0.95088 1.43532 1.08774 1.33306 1.45206 1.19207 0.85314 1.36015 0.98395 0.91570 1.25059 0.97595 1.01225 0.95513 1.70096 1.17800 1.51840 1.14588 0.86341 0.81927 0.77787 0.81028 1.21544 1.21814 1.20430 1.21307 0.93114 0.86863 0.93883 1.82949 1.60186 1.02660 1.07823 0.92231 0.91989 0.92134 0.90733 0.89966 0.84096 0.83012 0.77524 0.89986 0.93102 0.93204 0.93669 0.93403 0.92059 0.94915 0.93533 0.93687 0.94948 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.05 -0.40 6.36 -27.88 -0.18 -0.58 16 3 C -0.20 -2.08 5.53 -35.86 -0.20 -2.28 16 4 C -0.15 -1.66 9.99 -41.41 -0.41 -2.08 16 5 C -0.06 -0.82 10.01 -40.43 -0.40 -1.22 16 6 C -0.25 -3.84 6.45 -36.79 -0.24 -4.07 16 7 C 0.59 10.95 7.74 -12.89 -0.10 10.85 16 8 O -0.53 -11.79 16.50 5.19 0.09 -11.71 16 9 N -0.71 -12.51 4.97 -55.70 -0.28 -12.79 16 10 C 0.12 2.36 2.27 -68.50 -0.16 2.21 16 11 H 0.08 1.58 6.75 -51.93 -0.35 1.23 16 12 C -0.12 -1.99 5.06 -28.02 -0.14 -2.13 16 13 C -0.10 -1.58 5.15 -29.79 -0.15 -1.73 16 14 C -0.15 -2.59 5.74 -28.58 -0.16 -2.76 16 15 C 0.15 3.26 5.66 -4.08 -0.02 3.24 16 16 N -0.59 -14.58 2.27 -172.09 -0.39 -14.97 16 17 C -0.26 -7.03 9.44 -15.06 -0.14 -7.17 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.14 4.87 -17.43 -0.08 0.05 16 20 N -0.90 -26.46 11.01 55.49 0.61 -25.85 16 21 Si 0.90 21.68 29.58 -169.99 -5.03 16.66 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 C 0.17 4.28 4.25 -2.95 -0.01 4.27 16 26 S 0.20 2.28 22.10 -107.50 -2.38 -0.10 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.39 5.84 7.66 -40.82 -0.31 5.53 16 35 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 36 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 37 H 0.05 0.80 7.36 -51.93 -0.38 0.42 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 42 H 0.05 1.00 7.99 -51.93 -0.41 0.58 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.03 0.93 8.03 -51.93 -0.42 0.51 16 45 H 0.08 2.08 6.31 -51.93 -0.33 1.76 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -31.77 371.22 -11.02 -42.79 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.20 Total: 4.50 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.04 Total: -4.13 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.06 Total: -53.61 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.38 Total: -0.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.77 -11.02 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034294423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.016 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds