Wall clock time and date at job start Tue Mar 31 2020 13:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47282 * 2 1 4 4 C 1.33818 * 124.52169 * 89.99588 * 3 2 1 5 5 C 1.37478 * 115.10098 * 179.72920 * 4 3 2 6 6 C 1.36648 * 113.29379 * 0.45314 * 5 4 3 7 7 C 1.46578 * 125.45475 * 179.83650 * 6 5 4 8 8 O 1.21701 * 120.00289 * 359.72486 * 7 6 5 9 9 N 1.34782 * 119.99776 * 179.71797 * 7 6 5 10 10 C 1.46500 * 119.99839 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.26192 * 35.32546 * 10 9 7 12 12 C 1.50884 * 109.36425 * 155.00041 * 10 9 7 13 13 C 1.52565 * 109.37831 * 212.09089 * 12 10 9 14 14 C 1.47098 * 114.32538 * 274.97655 * 13 12 10 15 15 C 1.54869 * 110.32268 * 62.80295 * 14 13 12 16 16 N 1.44581 * 109.59866 * 288.73381 * 15 14 13 17 17 C 1.36937 * 118.64433 * 270.72503 * 16 15 14 18 18 H 1.08000 * 119.99888 * 26.49899 * 17 16 15 19 19 C 1.38808 * 120.00070 * 206.50010 * 17 16 15 20 20 N 1.31621 * 119.99870 * 15.66260 * 19 17 16 21 21 Si 1.86795 * 120.00070 * 195.66198 * 19 17 16 22 22 H 1.48495 * 109.47275 * 89.99969 * 21 19 17 23 23 H 1.48503 * 109.47305 * 210.00071 * 21 19 17 24 24 H 1.48497 * 109.47034 * 329.99893 * 21 19 17 25 25 C 1.47600 * 122.71149 * 90.70253 * 16 15 14 26 26 S 1.70613 * 124.52404 * 269.97289 * 3 2 1 27 27 H 1.09000 * 109.47135 * 60.00066 * 1 2 3 28 28 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47451 * 299.99983 * 1 2 3 30 30 H 1.08993 * 109.47202 * 239.99726 * 2 1 3 31 31 H 1.09004 * 109.46672 * 119.99833 * 2 1 3 32 32 H 1.08005 * 122.44960 * 359.95612 * 4 3 2 33 33 H 1.07996 * 123.35300 * 180.27051 * 5 4 3 34 34 H 0.97000 * 119.99980 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.48767 * 92.11482 * 12 10 9 36 36 H 1.08997 * 109.49016 * 332.07117 * 12 10 9 37 37 H 1.09004 * 108.51428 * 36.22583 * 13 12 10 38 38 H 1.08995 * 108.51377 * 153.72248 * 13 12 10 39 39 H 1.09001 * 109.32788 * 183.06385 * 14 13 12 40 40 H 1.08992 * 109.33041 * 302.71468 * 14 13 12 41 41 H 1.08998 * 109.44539 * 48.77270 * 15 14 13 42 42 H 1.09000 * 109.44774 * 168.69366 * 15 14 13 43 43 H 0.97000 * 120.00069 * 179.97438 * 20 19 17 44 44 H 1.09001 * 108.95052 * 78.57869 * 25 16 15 45 45 H 1.08999 * 108.95056 * 197.20214 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7428 3.4125 0.8775 6 6 2.8473 3.7231 -0.4491 7 6 3.3025 5.0078 -0.9882 8 8 3.6209 5.9067 -0.2320 9 7 3.3687 5.1937 -2.3215 10 6 3.8232 6.4780 -2.8604 11 1 4.5985 6.8859 -2.2118 12 6 4.3876 6.2684 -4.2439 13 6 5.5104 7.2716 -4.4898 14 6 5.0553 8.5839 -4.9739 15 6 4.1570 9.2666 -3.9130 16 7 2.8859 8.5815 -3.8404 17 6 1.8711 8.9918 -4.6632 18 1 2.0989 9.4737 -5.6025 19 6 0.5497 8.7884 -4.2900 20 7 0.2565 8.4934 -3.0412 21 14 -0.8124 8.9334 -5.5600 22 1 -1.0461 7.6086 -6.1887 23 1 -2.0595 9.3940 -4.8980 24 1 -0.4147 9.9130 -6.6027 25 6 2.6371 7.4576 -2.9165 26 16 2.3553 2.3322 -1.4057 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.1435 1.7377 2.0965 33 1 2.9919 4.1023 1.6703 34 1 3.1147 4.4774 -2.9242 35 1 3.6006 6.4149 -4.9837 36 1 4.7805 5.2551 -4.3267 37 1 6.0553 7.4168 -3.5570 38 1 6.1960 6.8503 -5.2250 39 1 5.9213 9.2151 -5.1734 40 1 4.4858 8.4515 -5.8938 41 1 4.6479 9.2248 -2.9407 42 1 3.9929 10.3074 -4.1919 43 1 -0.6669 8.3516 -2.7803 44 1 2.4582 7.8541 -1.9170 45 1 1.7487 6.9187 -3.2457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034294423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:52 Heat of formation + Delta-G solvation = -13.399402 kcal Electronic energy + Delta-G solvation = -25304.818337 eV Core-core repulsion = 21834.188483 eV Total energy + Delta-G solvation = -3470.629853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10173 -39.49575 -38.70055 -36.09164 -35.22519 -34.67163 -32.71197 -31.91882 -29.57927 -27.95190 -26.43871 -25.85682 -24.76403 -23.25918 -22.58832 -21.62091 -20.99848 -20.10567 -18.90417 -18.61122 -17.42797 -17.12459 -16.85574 -16.28983 -16.13137 -15.69150 -15.46292 -15.28593 -15.04687 -14.87067 -14.46836 -14.29284 -14.11067 -13.84698 -13.73882 -13.30651 -13.02596 -12.97056 -12.88834 -12.79730 -12.48567 -12.41477 -12.18304 -12.08787 -12.07212 -11.89354 -11.69887 -11.56975 -11.41659 -11.20034 -11.12905 -10.52008 -10.18020 -9.65776 -9.54962 -8.68036 -7.85051 -5.34299 -0.52797 0.43235 0.88119 1.37707 1.45924 1.45929 1.55985 2.02868 2.21086 2.51746 3.27031 3.59769 3.70678 3.86565 3.89953 4.04732 4.14494 4.26488 4.32813 4.39727 4.40911 4.43635 4.47950 4.60766 4.79895 4.81717 4.90898 4.93340 5.03350 5.05374 5.09525 5.14386 5.19859 5.27820 5.29645 5.33214 5.34906 5.41905 5.44275 5.52385 5.62241 5.68170 5.76990 6.37709 6.44987 7.09378 7.17016 7.91371 8.32830 9.19247 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.003761 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.794165 B = 7443.736680 C = 8617.629626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.181 4.181 4 C -0.161 4.161 5 C -0.056 4.056 6 C -0.303 4.303 7 C 0.582 3.418 8 O -0.579 6.579 9 N -0.706 5.706 10 C 0.135 3.865 11 H 0.062 0.938 12 C -0.108 4.108 13 C -0.100 4.100 14 C -0.132 4.132 15 C 0.145 3.855 16 N -0.600 5.600 17 C -0.262 4.262 18 H 0.073 0.927 19 C -0.051 4.051 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.282 1.282 23 H -0.300 1.300 24 H -0.266 1.266 25 C 0.197 3.803 26 S 0.229 5.771 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.169 0.831 33 H 0.144 0.856 34 H 0.405 0.595 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.039 0.961 43 H 0.246 0.754 44 H -0.027 1.027 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -20.128 2.110 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.301 4.301 4 C -0.190 4.190 5 C -0.090 4.090 6 C -0.423 4.423 7 C 0.370 3.630 8 O -0.460 6.460 9 N -0.357 5.357 10 C 0.030 3.970 11 H 0.080 0.920 12 C -0.146 4.146 13 C -0.137 4.137 14 C -0.172 4.172 15 C 0.018 3.982 16 N -0.323 5.323 17 C -0.392 4.392 18 H 0.090 0.910 19 C -0.246 4.246 20 N -0.585 5.585 21 Si 0.794 3.206 22 H -0.209 1.209 23 H -0.227 1.227 24 H -0.190 1.190 25 C 0.070 3.930 26 S 0.497 5.503 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.187 0.813 33 H 0.161 0.839 34 H 0.242 0.758 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.055 0.945 44 H -0.009 1.009 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.370 -19.773 1.126 20.805 hybrid contribution -1.176 0.789 1.267 1.900 sum 5.194 -18.985 2.393 19.827 Atomic orbital electron populations 1.21828 0.93770 1.03166 1.02075 1.20316 0.96451 0.87416 1.05147 1.24744 1.05224 1.03141 0.97004 1.20100 1.04820 0.93029 1.01071 1.20946 0.96120 0.97236 0.94671 1.24490 1.18786 0.99594 0.99387 1.17456 0.76827 0.86198 0.82506 1.90783 1.51534 1.44691 1.59024 1.45917 1.67481 1.16264 1.05998 1.21435 0.96674 0.83176 0.95737 0.92006 1.21235 0.98993 1.00189 0.94152 1.20231 0.96902 0.95091 1.01521 1.21319 0.99293 0.97251 0.99290 1.20975 0.86152 0.94638 0.96425 1.43741 1.09732 1.34046 1.44746 1.19558 0.86018 1.35041 0.98615 0.90979 1.25850 0.99928 1.01695 0.97137 1.70308 1.17588 1.53848 1.16713 0.85279 0.78490 0.78075 0.78718 1.20853 1.22691 1.19028 1.20884 0.94301 0.87372 0.90460 1.82746 1.59296 1.00605 1.07623 0.93330 0.89976 0.92611 0.89258 0.87761 0.81330 0.83874 0.75841 0.91933 0.89625 0.92950 0.90030 0.90308 0.92976 0.95312 0.94259 0.94488 1.00858 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.05 -0.62 6.36 29.85 0.19 -0.43 16 3 C -0.18 -3.32 5.53 24.68 0.14 -3.18 16 4 C -0.16 -3.26 9.99 21.09 0.21 -3.05 16 5 C -0.06 -1.54 10.01 21.72 0.22 -1.32 16 6 C -0.30 -9.40 6.45 24.07 0.16 -9.25 16 7 C 0.58 22.97 7.74 86.42 0.67 23.64 16 8 O -0.58 -27.90 16.50 -4.35 -0.07 -27.97 16 9 N -0.71 -25.64 4.97 -448.36 -2.23 -27.87 16 10 C 0.14 5.50 2.27 44.62 0.10 5.60 16 11 H 0.06 2.70 6.75 -2.39 -0.02 2.68 16 12 C -0.11 -3.55 5.06 29.76 0.15 -3.40 16 13 C -0.10 -2.96 5.15 28.61 0.15 -2.81 16 14 C -0.13 -4.37 5.74 29.40 0.17 -4.20 16 15 C 0.14 6.21 5.66 87.38 0.49 6.71 16 16 N -0.60 -30.93 2.27 -698.38 -1.59 -32.51 16 17 C -0.26 -14.51 9.44 84.03 0.79 -13.72 16 18 H 0.07 3.85 7.88 -2.91 -0.02 3.82 16 19 C -0.05 -2.91 4.87 84.86 0.41 -2.50 16 20 N -0.94 -58.14 11.01 21.65 0.24 -57.90 16 21 Si 0.97 45.48 29.58 68.60 2.03 47.51 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C 0.20 10.25 4.25 86.49 0.37 10.62 16 26 S 0.23 5.02 22.10 -56.49 -1.25 3.77 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.41 12.13 7.66 -92.71 -0.71 11.42 16 35 H 0.06 2.35 7.48 -2.39 -0.02 2.33 16 36 H 0.09 2.25 7.94 -2.39 -0.02 2.23 16 37 H 0.05 1.56 7.36 -2.38 -0.02 1.55 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 42 H 0.04 1.71 7.99 -2.39 -0.02 1.69 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H -0.03 -1.68 8.03 -2.39 -0.02 -1.70 16 45 H 0.05 2.74 6.31 -2.39 -0.02 2.72 16 Total: -1.00 -74.62 371.22 2.33 -72.29 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.27 Total: 21.02 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 4.93 Total: 1.67 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -3.58 Total: -118.29 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.07 Total: -27.97 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.25 Total: 3.77 kcal Total: -74.62 2.33 -72.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034294423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.888 kcal (2) G-P(sol) polarization free energy of solvation -74.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds