Wall clock time and date at job start Tue Mar 31 2020 13:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47343 * 2 1 4 4 C 1.37469 * 123.35473 * 264.97567 * 3 2 1 5 5 C 1.33809 * 115.10490 * 180.02562 * 4 3 2 6 6 S 1.70623 * 110.95437 * 359.97438 * 5 4 3 7 7 C 1.36653 * 123.34900 * 84.99411 * 3 2 1 8 8 C 1.46584 * 125.45951 * 359.96264 * 7 3 2 9 9 O 1.21704 * 119.99937 * 359.97438 * 8 7 3 10 10 N 1.34778 * 119.99957 * 179.97438 * 8 7 3 11 11 C 1.46494 * 119.99761 * 180.02562 * 10 8 7 12 12 H 1.09004 * 108.45985 * 327.28550 * 11 10 8 13 13 C 1.52529 * 108.52014 * 209.72250 * 11 10 8 14 14 C 1.50135 * 105.41818 * 149.35268 * 13 11 10 15 15 C 1.54840 * 110.81094 * 97.68127 * 14 13 11 16 16 C 1.54900 * 110.14437 * 321.13638 * 15 14 13 17 17 N 1.43429 * 116.07839 * 318.63653 * 16 15 14 18 18 C 1.36935 * 120.54213 * 271.59565 * 17 16 15 19 19 H 1.07999 * 120.00438 * 140.21317 * 18 17 16 20 20 C 1.38816 * 119.99468 * 320.20534 * 18 17 16 21 21 N 1.31618 * 119.99762 * 156.34342 * 20 18 17 22 22 Si 1.86796 * 120.00262 * 336.34857 * 20 18 17 23 23 H 1.48491 * 109.47493 * 95.57088 * 22 20 18 24 24 H 1.48501 * 109.47028 * 215.57447 * 22 20 18 25 25 H 1.48502 * 109.47249 * 335.56974 * 22 20 18 26 26 C 1.46236 * 108.52466 * 85.00370 * 11 10 8 27 27 H 1.08998 * 109.46404 * 60.00290 * 1 2 3 28 28 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47020 * 300.00125 * 1 2 3 30 30 H 1.09002 * 109.47588 * 239.99939 * 2 1 3 31 31 H 1.09006 * 109.46689 * 119.99842 * 2 1 3 32 32 H 1.08002 * 122.44540 * 359.97438 * 4 3 2 33 33 H 1.07997 * 124.52844 * 180.26463 * 5 4 3 34 34 H 0.96998 * 120.00042 * 0.02562 * 10 8 7 35 35 H 1.08998 * 110.25204 * 268.32661 * 13 11 10 36 36 H 1.09002 * 110.24855 * 30.38083 * 13 11 10 37 37 H 1.08998 * 109.20468 * 337.34445 * 14 13 11 38 38 H 1.08997 * 109.17505 * 218.00315 * 14 13 11 39 39 H 1.08996 * 109.36205 * 200.92861 * 15 14 13 40 40 H 1.09004 * 109.24676 * 81.27255 * 15 14 13 41 41 H 1.08997 * 108.16001 * 196.91962 * 16 15 14 42 42 H 1.09004 * 107.99917 * 80.22880 * 16 15 14 43 43 H 0.97004 * 120.00346 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.84448 * 299.15213 * 26 11 10 45 45 H 1.09006 * 109.84339 * 60.14009 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3792 2.0999 -1.1438 5 6 2.8053 3.3538 -0.9525 6 16 2.7928 3.7562 0.7055 7 6 2.1889 2.1623 1.1372 8 6 1.8991 1.7027 2.4986 9 8 1.4817 0.5746 2.6841 10 7 2.0949 2.5294 3.5449 11 6 1.8058 2.0699 4.9055 12 1 0.9679 1.3739 4.8640 13 6 1.3906 3.2735 5.7454 14 6 0.4316 2.7353 6.7676 15 6 1.1529 2.4680 8.1114 16 6 2.5645 1.8852 7.8526 17 7 2.6604 0.9045 6.8104 18 6 2.4658 -0.4230 7.0840 19 1 1.9206 -1.0436 6.3883 20 6 2.9695 -0.9712 8.2557 21 7 2.4278 -2.0601 8.7588 22 14 4.4159 -0.1633 9.1185 23 1 3.9147 0.7369 10.1878 24 1 5.2821 -1.2099 9.7181 25 1 5.2011 0.6255 8.1353 26 6 2.9771 1.3573 5.4140 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.3133 1.6536 -2.1251 33 1 3.1115 4.0235 -1.7425 34 1 2.4272 3.4286 3.3970 35 1 2.2607 3.7089 6.2368 36 1 0.8971 4.0177 5.1202 37 1 0.0014 1.8037 6.4000 38 1 -0.3662 3.4606 6.9268 39 1 0.5709 1.7579 8.6989 40 1 1.2439 3.4040 8.6628 41 1 2.9203 1.4331 8.7783 42 1 3.2297 2.7120 7.6034 43 1 2.7799 -2.4434 9.5773 44 1 3.1871 0.4932 4.7835 45 1 3.8390 2.0245 5.4279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034541948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:47 Heat of formation + Delta-G solvation = 19.621252 kcal Electronic energy + Delta-G solvation = -25783.603734 eV Core-core repulsion = 22314.405763 eV Total energy + Delta-G solvation = -3469.197970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.08512 -38.65220 -37.41033 -34.61779 -33.22004 -32.74134 -31.35583 -30.77613 -28.93189 -26.37566 -25.44067 -24.51306 -23.14597 -22.43695 -21.26596 -20.32356 -19.46965 -18.71405 -18.17662 -16.47326 -16.13795 -15.90284 -15.45777 -15.05412 -14.94584 -14.23744 -14.12746 -14.04366 -13.71674 -13.61139 -13.23996 -12.97753 -12.88227 -12.72095 -12.44228 -12.04313 -11.96370 -11.88371 -11.67524 -11.54605 -11.15894 -11.01405 -10.78834 -10.72838 -10.40624 -10.37078 -10.11391 -9.98896 -9.65201 -9.62562 -9.44755 -9.03410 -8.81013 -8.61555 -8.38851 -6.74331 -5.96279 -3.39583 0.41116 1.33642 1.71891 2.27933 3.29227 3.34711 3.35903 3.49295 3.55589 4.56548 4.65560 4.78921 5.03812 5.05349 5.05642 5.18262 5.32125 5.33011 5.37440 5.47729 5.53602 5.61625 5.71630 5.88314 5.88833 5.92320 5.95540 6.06051 6.12379 6.17387 6.17903 6.34064 6.38098 6.46140 6.53719 6.59244 6.64821 6.74678 6.79707 6.86598 6.92912 7.02197 7.67506 8.12788 8.37685 8.43899 9.05665 9.74861 10.17724 11.19080 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.003628 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.962815 B = 7715.182245 C = 8230.763639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 C -0.022 4.022 4 C -0.144 4.144 5 C -0.233 4.233 6 S 0.185 5.815 7 C -0.260 4.260 8 C 0.583 3.417 9 O -0.513 6.513 10 N -0.727 5.727 11 C 0.133 3.867 12 H 0.093 0.907 13 C -0.120 4.120 14 C -0.106 4.106 15 C -0.142 4.142 16 C 0.147 3.853 17 N -0.593 5.593 18 C -0.266 4.266 19 H 0.078 0.922 20 C 0.042 3.958 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.271 1.271 26 C 0.129 3.871 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.390 0.610 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.073 0.927 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 14.697 -17.903 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.037 4.037 4 C -0.176 4.176 5 C -0.370 4.370 6 S 0.453 5.547 7 C -0.380 4.380 8 C 0.368 3.632 9 O -0.390 6.390 10 N -0.378 5.378 11 C 0.029 3.971 12 H 0.111 0.889 13 C -0.158 4.158 14 C -0.144 4.144 15 C -0.182 4.182 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.395 4.395 19 H 0.095 0.905 20 C -0.159 4.159 21 N -0.536 5.536 22 Si 0.706 3.294 23 H -0.214 1.214 24 H -0.229 1.229 25 H -0.196 1.196 26 C 0.004 3.996 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.160 0.840 33 H 0.184 0.816 34 H 0.223 0.777 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.616 15.043 -16.794 22.554 hybrid contribution 0.692 -0.267 -0.493 0.890 sum 0.076 14.776 -17.287 22.742 Atomic orbital electron populations 1.21590 0.94285 1.01881 1.01572 1.20435 0.96549 0.90478 1.03779 1.19555 0.96177 0.97569 0.90410 1.19928 1.03721 0.94209 0.99699 1.25186 1.08729 1.01412 1.01715 1.82928 1.60708 1.12123 0.98947 1.24607 1.16193 0.99237 0.97985 1.16940 0.78251 0.85356 0.82624 1.90855 1.44993 1.18383 1.84763 1.46367 1.67817 1.16238 1.07389 1.20967 1.01545 0.96330 0.78233 0.88886 1.21330 1.00358 0.96452 0.97646 1.21290 0.96920 1.00503 0.95686 1.22816 0.99902 0.99287 0.96217 1.20701 0.93399 0.91309 0.92645 1.44025 1.81460 1.03282 1.02772 1.18749 1.29957 0.84119 1.06650 0.90468 1.25505 0.97464 0.95305 0.97660 1.69897 1.39974 1.23146 1.20601 0.86926 0.85053 0.78222 0.79245 1.21374 1.22933 1.19556 1.20750 0.93453 0.97694 0.87724 0.93512 0.92253 0.92108 0.91466 0.88353 0.83955 0.81601 0.77718 0.90982 0.91986 0.91238 0.93531 0.92018 0.93297 0.93913 0.95375 0.92728 0.90877 0.95119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.78 37.16 0.36 -1.25 16 2 C -0.07 -0.90 5.50 -27.88 -0.15 -1.06 16 3 C -0.02 -0.27 5.16 -105.48 -0.54 -0.82 16 4 C -0.14 -1.39 9.96 -41.42 -0.41 -1.80 16 5 C -0.23 -1.97 10.92 29.18 0.32 -1.65 16 6 S 0.18 1.72 22.16 -107.50 -2.38 -0.66 16 7 C -0.26 -3.37 6.45 -36.79 -0.24 -3.61 16 8 C 0.58 9.25 7.69 -12.89 -0.10 9.15 16 9 O -0.51 -9.98 13.25 5.19 0.07 -9.91 16 10 N -0.73 -10.45 4.87 -58.56 -0.29 -10.74 16 11 C 0.13 2.29 2.01 -71.39 -0.14 2.14 16 12 H 0.09 1.90 6.22 -51.93 -0.32 1.58 16 13 C -0.12 -1.76 5.25 -28.40 -0.15 -1.91 16 14 C -0.11 -1.75 5.65 -27.19 -0.15 -1.90 16 15 C -0.14 -2.61 6.41 -24.76 -0.16 -2.77 16 16 C 0.15 3.16 4.22 -4.66 -0.02 3.14 16 17 N -0.59 -14.06 2.14 -175.08 -0.37 -14.43 16 18 C -0.27 -7.55 9.92 -15.06 -0.15 -7.70 16 19 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 20 C 0.04 1.21 5.28 -17.43 -0.09 1.12 16 21 N -0.90 -27.59 13.97 55.49 0.78 -26.81 16 22 Si 0.88 22.43 25.26 -169.99 -4.29 18.13 16 23 H -0.29 -7.10 6.73 56.52 0.38 -6.72 16 24 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 26 C 0.13 2.62 5.53 -5.20 -0.03 2.59 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.85 7.59 -51.94 -0.39 0.46 16 30 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.10 1.49 6.33 -51.93 -0.33 1.16 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.39 4.46 7.73 -40.82 -0.32 4.14 16 35 H 0.07 1.04 6.28 -51.93 -0.33 0.71 16 36 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.07 1.32 6.82 -51.93 -0.35 0.96 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.04 1.02 3.40 -51.93 -0.18 0.85 16 42 H 0.03 0.54 6.88 -51.93 -0.36 0.19 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.07 1.65 7.93 -51.93 -0.41 1.23 16 45 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -32.17 358.96 -9.53 -41.70 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.79 Total: 3.65 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.66 Total: -6.33 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.12 Total: -51.99 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.29 Total: 18.13 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.38 Total: -0.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.17 -9.53 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034541948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.321 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds