Wall clock time and date at job start Tue Mar 31 2020 13:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47343 * 2 1 4 4 C 1.37469 * 123.35473 * 264.97567 * 3 2 1 5 5 C 1.33809 * 115.10490 * 180.02562 * 4 3 2 6 6 S 1.70623 * 110.95437 * 359.97438 * 5 4 3 7 7 C 1.36653 * 123.34900 * 84.99411 * 3 2 1 8 8 C 1.46584 * 125.45951 * 359.96264 * 7 3 2 9 9 O 1.21704 * 119.99937 * 359.97438 * 8 7 3 10 10 N 1.34778 * 119.99957 * 179.97438 * 8 7 3 11 11 C 1.46494 * 119.99761 * 180.02562 * 10 8 7 12 12 H 1.09004 * 108.45985 * 327.28550 * 11 10 8 13 13 C 1.52529 * 108.52014 * 209.72250 * 11 10 8 14 14 C 1.50135 * 105.41818 * 149.35268 * 13 11 10 15 15 C 1.54840 * 110.81094 * 97.68127 * 14 13 11 16 16 C 1.54900 * 110.14437 * 321.13638 * 15 14 13 17 17 N 1.43429 * 116.07839 * 318.63653 * 16 15 14 18 18 C 1.36935 * 120.54213 * 271.59565 * 17 16 15 19 19 H 1.07999 * 120.00438 * 140.21317 * 18 17 16 20 20 C 1.38816 * 119.99468 * 320.20534 * 18 17 16 21 21 N 1.31618 * 119.99762 * 156.34342 * 20 18 17 22 22 Si 1.86796 * 120.00262 * 336.34857 * 20 18 17 23 23 H 1.48491 * 109.47493 * 95.57088 * 22 20 18 24 24 H 1.48501 * 109.47028 * 215.57447 * 22 20 18 25 25 H 1.48502 * 109.47249 * 335.56974 * 22 20 18 26 26 C 1.46236 * 108.52466 * 85.00370 * 11 10 8 27 27 H 1.08998 * 109.46404 * 60.00290 * 1 2 3 28 28 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47020 * 300.00125 * 1 2 3 30 30 H 1.09002 * 109.47588 * 239.99939 * 2 1 3 31 31 H 1.09006 * 109.46689 * 119.99842 * 2 1 3 32 32 H 1.08002 * 122.44540 * 359.97438 * 4 3 2 33 33 H 1.07997 * 124.52844 * 180.26463 * 5 4 3 34 34 H 0.96998 * 120.00042 * 0.02562 * 10 8 7 35 35 H 1.08998 * 110.25204 * 268.32661 * 13 11 10 36 36 H 1.09002 * 110.24855 * 30.38083 * 13 11 10 37 37 H 1.08998 * 109.20468 * 337.34445 * 14 13 11 38 38 H 1.08997 * 109.17505 * 218.00315 * 14 13 11 39 39 H 1.08996 * 109.36205 * 200.92861 * 15 14 13 40 40 H 1.09004 * 109.24676 * 81.27255 * 15 14 13 41 41 H 1.08997 * 108.16001 * 196.91962 * 16 15 14 42 42 H 1.09004 * 107.99917 * 80.22880 * 16 15 14 43 43 H 0.97004 * 120.00346 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.84448 * 299.15213 * 26 11 10 45 45 H 1.09006 * 109.84339 * 60.14009 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3792 2.0999 -1.1438 5 6 2.8053 3.3538 -0.9525 6 16 2.7928 3.7562 0.7055 7 6 2.1889 2.1623 1.1372 8 6 1.8991 1.7027 2.4986 9 8 1.4817 0.5746 2.6841 10 7 2.0949 2.5294 3.5449 11 6 1.8058 2.0699 4.9055 12 1 0.9679 1.3739 4.8640 13 6 1.3906 3.2735 5.7454 14 6 0.4316 2.7353 6.7676 15 6 1.1529 2.4680 8.1114 16 6 2.5645 1.8852 7.8526 17 7 2.6604 0.9045 6.8104 18 6 2.4658 -0.4230 7.0840 19 1 1.9206 -1.0436 6.3883 20 6 2.9695 -0.9712 8.2557 21 7 2.4278 -2.0601 8.7588 22 14 4.4159 -0.1633 9.1185 23 1 3.9147 0.7369 10.1878 24 1 5.2821 -1.2099 9.7181 25 1 5.2011 0.6255 8.1353 26 6 2.9771 1.3573 5.4140 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.3133 1.6536 -2.1251 33 1 3.1115 4.0235 -1.7425 34 1 2.4272 3.4286 3.3970 35 1 2.2607 3.7089 6.2368 36 1 0.8971 4.0177 5.1202 37 1 0.0014 1.8037 6.4000 38 1 -0.3662 3.4606 6.9268 39 1 0.5709 1.7579 8.6989 40 1 1.2439 3.4040 8.6628 41 1 2.9203 1.4331 8.7783 42 1 3.2297 2.7120 7.6034 43 1 2.7799 -2.4434 9.5773 44 1 3.1871 0.4932 4.7835 45 1 3.8390 2.0245 5.4279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034541948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:47 Heat of formation + Delta-G solvation = -1.322802 kcal Electronic energy + Delta-G solvation = -25784.511936 eV Core-core repulsion = 22314.405763 eV Total energy + Delta-G solvation = -3470.106173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34839 -39.84518 -38.63215 -36.20924 -34.84462 -33.66521 -33.36090 -32.18577 -29.95630 -28.19159 -26.50304 -25.99950 -24.80270 -23.32928 -22.56076 -21.76082 -21.08444 -19.81310 -19.07774 -18.45227 -17.66754 -17.03522 -16.93675 -16.37467 -16.10093 -15.74322 -15.63307 -15.08290 -14.97074 -14.87825 -14.67833 -14.54831 -14.28698 -13.87026 -13.81397 -13.52106 -13.30059 -13.26333 -12.85891 -12.85165 -12.61436 -12.40838 -12.16161 -12.03590 -11.92370 -11.72385 -11.69884 -11.64685 -11.38767 -11.16294 -10.90527 -10.61653 -10.23127 -9.73090 -9.35906 -8.71584 -8.22903 -5.64022 -0.44936 0.53861 0.96245 1.29612 1.39660 1.44435 1.52213 2.08215 2.21313 2.40779 3.02845 3.34777 3.68173 3.89125 3.91233 4.05396 4.12144 4.17940 4.32981 4.37334 4.42169 4.46179 4.47198 4.52176 4.57105 4.74702 4.80563 4.87512 4.93177 4.97276 5.04191 5.08851 5.10656 5.20609 5.23175 5.30360 5.31482 5.40764 5.42992 5.52942 5.54508 5.56477 5.94077 6.14584 6.52627 6.98934 7.23112 7.59137 8.04784 8.97490 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.003628 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.962815 B = 7715.182245 C = 8230.763639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 C -0.026 4.026 4 C -0.158 4.158 5 C -0.213 4.213 6 S 0.238 5.762 7 C -0.307 4.307 8 C 0.577 3.423 9 O -0.565 6.565 10 N -0.714 5.714 11 C 0.145 3.855 12 H 0.048 0.952 13 C -0.107 4.107 14 C -0.103 4.103 15 C -0.138 4.138 16 C 0.136 3.864 17 N -0.604 5.604 18 C -0.261 4.261 19 H 0.020 0.980 20 C -0.015 4.015 21 N -0.947 5.947 22 Si 0.952 3.048 23 H -0.268 1.268 24 H -0.307 1.307 25 H -0.259 1.259 26 C 0.135 3.865 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.167 0.833 33 H 0.204 0.796 34 H 0.409 0.591 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.029 0.971 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.090 0.910 41 H 0.020 0.980 42 H 0.064 0.936 43 H 0.264 0.736 44 H 0.034 0.966 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 19.766 -19.617 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 C -0.042 4.042 4 C -0.189 4.189 5 C -0.351 4.351 6 S 0.506 5.494 7 C -0.426 4.426 8 C 0.365 3.635 9 O -0.446 6.446 10 N -0.366 5.366 11 C 0.040 3.960 12 H 0.066 0.934 13 C -0.145 4.145 14 C -0.141 4.141 15 C -0.178 4.178 16 C 0.010 3.990 17 N -0.328 5.328 18 C -0.391 4.391 19 H 0.038 0.962 20 C -0.212 4.212 21 N -0.591 5.591 22 Si 0.779 3.221 23 H -0.194 1.194 24 H -0.235 1.235 25 H -0.183 1.183 26 C 0.010 3.990 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.184 0.816 33 H 0.221 0.779 34 H 0.245 0.755 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.038 0.962 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.998 20.198 -18.527 27.426 hybrid contribution 0.129 -1.841 -0.110 1.849 sum 1.127 18.356 -18.638 26.184 Atomic orbital electron populations 1.21526 0.94185 1.01879 1.01113 1.20386 0.96717 0.91384 1.02952 1.19756 0.95784 0.97236 0.91444 1.20062 1.04411 0.94718 0.99675 1.25706 1.05961 1.01229 1.02204 1.82658 1.59019 1.08480 0.99205 1.24420 1.19424 1.02439 0.96364 1.17466 0.77180 0.84706 0.84129 1.90838 1.47248 1.20696 1.85789 1.46091 1.67628 1.16915 1.05981 1.20528 0.98389 0.96906 0.80187 0.93391 1.21311 1.00742 0.95461 0.96962 1.21249 0.98092 0.99673 0.95057 1.22770 0.97611 1.00111 0.97323 1.20892 0.95970 0.91433 0.90710 1.44050 1.81988 1.02005 1.04735 1.18466 1.28836 0.86198 1.05552 0.96196 1.26155 0.99940 0.96296 0.98776 1.70038 1.41711 1.25615 1.21688 0.85712 0.80647 0.77234 0.78501 1.19445 1.23527 1.18292 1.20749 0.95831 0.96975 0.85396 0.91149 0.92132 0.95097 0.89065 0.92271 0.81602 0.77938 0.75469 0.89106 0.88447 0.95259 0.90236 0.95125 0.89181 0.96245 0.91760 0.92676 0.94711 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.78 71.98 0.70 -2.53 16 2 C -0.08 -1.94 5.50 29.85 0.16 -1.78 16 3 C -0.03 -0.62 5.16 -20.42 -0.11 -0.73 16 4 C -0.16 -2.56 9.96 21.08 0.21 -2.35 16 5 C -0.21 -2.66 10.92 66.81 0.73 -1.93 16 6 S 0.24 3.62 22.16 -56.49 -1.25 2.37 16 7 C -0.31 -7.82 6.45 24.08 0.16 -7.67 16 8 C 0.58 19.18 7.69 86.42 0.66 19.85 16 9 O -0.57 -24.37 13.25 -4.36 -0.06 -24.42 16 10 N -0.71 -20.29 4.87 -457.40 -2.23 -22.52 16 11 C 0.15 5.04 2.01 42.75 0.09 5.13 16 12 H 0.05 2.13 6.22 -2.39 -0.01 2.12 16 13 C -0.11 -2.84 5.25 29.52 0.16 -2.68 16 14 C -0.10 -3.24 5.65 30.30 0.17 -3.07 16 15 C -0.14 -4.85 6.41 31.87 0.20 -4.65 16 16 C 0.14 5.64 4.22 87.60 0.37 6.01 16 17 N -0.60 -29.36 2.14 -707.82 -1.51 -30.87 16 18 C -0.26 -15.79 9.92 84.03 0.83 -14.95 16 19 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 20 C -0.01 -0.90 5.28 84.86 0.45 -0.45 16 21 N -0.95 -61.62 13.97 21.65 0.30 -61.32 16 22 Si 0.95 47.39 25.26 68.60 1.73 49.12 16 23 H -0.27 -12.48 6.73 99.48 0.67 -11.81 16 24 H -0.31 -15.42 7.11 99.48 0.71 -14.72 16 25 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.13 5.60 5.53 83.58 0.46 6.06 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 0.93 7.59 -2.39 -0.02 0.92 16 30 H 0.09 1.83 8.12 -2.39 -0.02 1.81 16 31 H 0.06 2.00 6.33 -2.38 -0.02 1.99 16 32 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.41 8.34 7.73 -92.71 -0.72 7.62 16 35 H 0.09 2.15 6.28 -2.39 -0.01 2.13 16 36 H 0.10 1.96 8.04 -2.39 -0.02 1.94 16 37 H 0.03 1.15 6.82 -2.39 -0.02 1.14 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.02 0.90 3.40 -2.39 -0.01 0.89 16 42 H 0.06 2.21 6.88 -2.38 -0.02 2.19 16 43 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 44 H 0.03 1.68 7.93 -2.39 -0.02 1.66 16 45 H 0.06 2.14 8.12 -2.38 -0.02 2.12 16 Total: -1.00 -79.41 358.96 2.49 -76.92 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.25 Total: 16.48 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.25 Total: -5.76 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -3.44 Total: -114.71 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.73 Total: 49.12 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.25 Total: 2.37 kcal Total: -79.41 2.49 -76.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034541948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.595 kcal (2) G-P(sol) polarization free energy of solvation -79.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds