Wall clock time and date at job start Tue Mar 31 2020 13:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47176 * 2 1 4 4 C 1.37474 * 123.35047 * 264.97756 * 3 2 1 5 5 C 1.33814 * 115.09867 * 180.02562 * 4 3 2 6 6 S 1.70617 * 110.95440 * 359.72480 * 5 4 3 7 7 C 1.36648 * 123.34988 * 85.00368 * 3 2 1 8 8 C 1.46578 * 125.45793 * 359.97438 * 7 3 2 9 9 O 1.21701 * 120.00289 * 0.02562 * 8 7 3 10 10 N 1.34782 * 119.99776 * 180.02562 * 8 7 3 11 11 C 1.46500 * 119.99839 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.26192 * 35.32546 * 11 10 8 13 13 C 1.50884 * 109.36425 * 155.00041 * 11 10 8 14 14 C 1.52571 * 109.37639 * 212.08815 * 13 11 10 15 15 C 1.47089 * 114.32746 * 274.97477 * 14 13 11 16 16 C 1.54869 * 110.32142 * 62.80611 * 15 14 13 17 17 N 1.44581 * 109.59866 * 288.73233 * 16 15 14 18 18 C 1.36937 * 118.64433 * 270.72503 * 17 16 15 19 19 H 1.08000 * 119.99888 * 26.49899 * 18 17 16 20 20 C 1.38808 * 120.00070 * 206.50010 * 18 17 16 21 21 N 1.31621 * 119.99870 * 15.66260 * 20 18 17 22 22 Si 1.86795 * 120.00070 * 195.66198 * 20 18 17 23 23 H 1.48493 * 109.47322 * 59.99795 * 22 20 18 24 24 H 1.48502 * 109.47114 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47151 * 299.99846 * 22 20 18 26 26 C 1.47600 * 122.71149 * 90.70253 * 17 16 15 27 27 H 1.08990 * 109.47456 * 59.99729 * 1 2 3 28 28 H 1.09003 * 109.47247 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47087 * 299.99655 * 1 2 3 30 30 H 1.09006 * 109.47087 * 240.00345 * 2 1 3 31 31 H 1.08999 * 109.47611 * 120.00015 * 2 1 3 32 32 H 1.07999 * 122.44704 * 0.02562 * 4 3 2 33 33 H 1.07996 * 124.52198 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99980 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.48767 * 92.11482 * 13 11 10 36 36 H 1.08999 * 109.48770 * 332.06636 * 13 11 10 37 37 H 1.09003 * 108.51175 * 36.23257 * 14 13 11 38 38 H 1.09000 * 108.50707 * 153.72074 * 14 13 11 39 39 H 1.09001 * 109.32732 * 183.06587 * 15 14 13 40 40 H 1.08992 * 109.33224 * 302.71747 * 15 14 13 41 41 H 1.08998 * 109.44539 * 48.77123 * 16 15 14 42 42 H 1.09000 * 109.44774 * 168.69218 * 16 15 14 43 43 H 0.97000 * 120.00069 * 179.97438 * 21 20 18 44 44 H 1.09001 * 108.95052 * 78.57869 * 26 17 16 45 45 H 1.08999 * 108.95056 * 197.20214 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3790 2.0999 -1.1439 5 6 2.8051 3.3539 -0.9526 6 16 2.7862 3.7585 0.7048 7 6 2.1890 2.1623 1.1371 8 6 1.8997 1.7026 2.4985 9 8 1.4834 0.5741 2.6842 10 7 2.0946 2.5296 3.5448 11 6 1.8049 2.0703 4.9054 12 1 2.0564 1.0131 4.9893 13 6 2.6336 2.8612 5.8875 14 6 2.9805 1.9789 7.0829 15 6 1.9459 1.9400 8.1277 16 6 0.6380 1.3287 7.5671 17 7 0.0209 2.2611 6.6504 18 6 -0.8649 3.1802 7.1462 19 1 -0.7895 3.5029 8.1741 20 6 -1.8597 3.6970 6.3276 21 7 -2.1542 3.0997 5.1924 22 14 -2.7805 5.2403 6.8373 23 1 -1.8202 6.3629 6.9873 24 1 -3.7851 5.5830 5.7987 25 1 -3.4688 5.0014 8.1313 26 6 0.3068 2.2635 5.2023 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.3124 1.6539 -2.1253 33 1 3.1147 4.0223 -1.7423 34 1 2.4260 3.4292 3.3967 35 1 2.0661 3.7275 6.2274 36 1 3.5513 3.1947 5.4031 37 1 3.1501 0.9632 6.7257 38 1 3.9064 2.3453 7.5262 39 1 2.2986 1.3340 8.9623 40 1 1.7470 2.9533 8.4765 41 1 0.8668 0.4013 7.0422 42 1 -0.0469 1.1207 8.3891 43 1 -2.8496 3.4606 4.6205 44 1 -0.2543 1.4575 4.7294 45 1 -0.0178 3.2141 4.7791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034541952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:52 Heat of formation + Delta-G solvation = 8.293522 kcal Electronic energy + Delta-G solvation = -25944.636282 eV Core-core repulsion = 22474.947104 eV Total energy + Delta-G solvation = -3469.689178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.77666 -38.34148 -37.24068 -34.37760 -33.52585 -32.61413 -30.84430 -30.50460 -28.75852 -26.07125 -25.26222 -24.20505 -23.10280 -22.30731 -21.13640 -20.12719 -19.24226 -18.48107 -18.01665 -16.61930 -15.87292 -15.59407 -15.29764 -15.02631 -14.54594 -14.07845 -13.98858 -13.89427 -13.54844 -13.33886 -13.19284 -12.89518 -12.71513 -12.41724 -12.30740 -12.05243 -11.82200 -11.41618 -11.30238 -11.11929 -11.01157 -10.88669 -10.67929 -10.63370 -10.40915 -10.25203 -10.13278 -9.93911 -9.77099 -9.52951 -9.43104 -8.85414 -8.50484 -8.46166 -8.33836 -6.61990 -5.73627 -3.18644 0.55920 1.48554 1.87136 2.41445 3.38013 3.44107 3.45287 3.46669 3.58285 4.52362 4.78150 4.98182 5.16747 5.20576 5.29344 5.35622 5.44558 5.48424 5.61480 5.65259 5.71790 5.75376 5.84073 5.93659 6.03858 6.04649 6.17025 6.22065 6.32386 6.35110 6.50013 6.53969 6.58836 6.64396 6.67486 6.69012 6.80678 6.92843 6.99003 7.12884 7.41201 7.77762 7.86015 7.91011 8.49711 8.57585 9.26886 9.94071 10.39439 11.32534 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.004225 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.298772 B = 6625.444470 C = 7285.963250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C -0.026 4.026 4 C -0.144 4.144 5 C -0.236 4.236 6 S 0.189 5.811 7 C -0.256 4.256 8 C 0.587 3.413 9 O -0.520 6.520 10 N -0.714 5.714 11 C 0.121 3.879 12 H 0.075 0.925 13 C -0.116 4.116 14 C -0.098 4.098 15 C -0.148 4.148 16 C 0.154 3.846 17 N -0.587 5.587 18 C -0.260 4.260 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.175 3.825 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.391 0.609 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.032 0.968 42 H 0.046 0.954 43 H 0.253 0.747 44 H 0.033 0.967 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.565 -0.278 -10.495 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.041 4.041 4 C -0.176 4.176 5 C -0.373 4.373 6 S 0.457 5.543 7 C -0.377 4.377 8 C 0.372 3.628 9 O -0.398 6.398 10 N -0.364 5.364 11 C 0.017 3.983 12 H 0.093 0.907 13 C -0.154 4.154 14 C -0.136 4.136 15 C -0.188 4.188 16 C 0.026 3.974 17 N -0.308 5.308 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.729 3.271 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.049 3.951 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.510 0.275 -9.655 15.805 hybrid contribution -0.694 0.279 -0.949 1.209 sum 11.816 0.554 -10.605 15.886 Atomic orbital electron populations 1.21612 0.94105 1.01774 1.02097 1.20397 0.96699 0.90481 1.03279 1.19528 0.96444 0.97698 0.90396 1.19899 1.03829 0.94273 0.99586 1.25181 1.08992 1.01313 1.01839 1.82996 1.60476 1.11962 0.98827 1.24608 1.16004 0.98991 0.98054 1.16859 0.77980 0.85344 0.82579 1.90790 1.45273 1.19043 1.84741 1.46055 1.67070 1.16078 1.07168 1.21809 0.99669 0.98400 0.78471 0.90672 1.21290 0.98295 1.00174 0.95680 1.20207 0.98169 0.99097 0.96082 1.21505 0.98311 1.01914 0.97083 1.20737 0.92052 0.91340 0.93233 1.43521 1.48225 1.36385 1.02666 1.19149 1.06250 1.16520 0.97096 0.91676 1.25048 0.96860 0.99577 0.97848 1.70081 1.32210 1.38706 1.13296 0.86433 0.79361 0.83712 0.77625 1.21114 1.21719 1.20885 1.21306 0.87326 1.02355 0.84151 0.93482 0.92437 0.91589 0.91716 0.88683 0.84056 0.81662 0.77591 0.90022 0.93135 0.93216 0.93710 0.93426 0.92075 0.94932 0.93575 0.93652 0.94928 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.78 37.16 0.36 -1.58 16 2 C -0.07 -0.93 5.50 -27.88 -0.15 -1.09 16 3 C -0.03 -0.36 5.16 -105.47 -0.54 -0.90 16 4 C -0.14 -1.60 9.96 -41.41 -0.41 -2.02 16 5 C -0.24 -2.39 10.92 29.18 0.32 -2.07 16 6 S 0.19 2.17 22.16 -107.50 -2.38 -0.21 16 7 C -0.26 -3.85 6.45 -36.79 -0.24 -4.09 16 8 C 0.59 10.60 7.74 -12.89 -0.10 10.50 16 9 O -0.52 -10.87 13.38 5.19 0.07 -10.80 16 10 N -0.71 -12.30 4.97 -55.70 -0.28 -12.58 16 11 C 0.12 2.34 2.27 -68.50 -0.16 2.19 16 12 H 0.08 1.54 6.75 -51.93 -0.35 1.19 16 13 C -0.12 -1.98 5.06 -28.01 -0.14 -2.12 16 14 C -0.10 -1.57 5.15 -29.79 -0.15 -1.72 16 15 C -0.15 -2.58 5.74 -28.58 -0.16 -2.75 16 16 C 0.15 3.25 5.66 -4.08 -0.02 3.23 16 17 N -0.59 -14.46 2.27 -172.09 -0.39 -14.85 16 18 C -0.26 -7.02 9.44 -15.06 -0.14 -7.16 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 20 C 0.01 0.16 4.87 -17.43 -0.08 0.07 16 21 N -0.90 -26.25 11.01 55.49 0.61 -25.64 16 22 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.17 4.23 4.25 -2.95 -0.01 4.22 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.14 7.60 -51.93 -0.39 0.75 16 30 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.09 1.48 6.33 -51.93 -0.33 1.15 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.39 5.78 7.66 -40.82 -0.31 5.47 16 35 H 0.08 1.57 7.48 -51.93 -0.39 1.18 16 36 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 37 H 0.05 0.79 7.36 -51.93 -0.38 0.41 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 42 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.03 0.92 8.03 -51.93 -0.42 0.50 16 45 H 0.08 2.06 6.31 -51.93 -0.33 1.73 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -30.73 365.29 -10.61 -41.34 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.08 Total: 5.92 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.64 Total: -5.29 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.06 Total: -53.06 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.38 Total: -0.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.73 -10.61 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034541952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.633 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds