Wall clock time and date at job start Tue Mar 31 2020 13:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47176 * 2 1 4 4 C 1.37474 * 123.35047 * 264.97756 * 3 2 1 5 5 C 1.33814 * 115.09867 * 180.02562 * 4 3 2 6 6 S 1.70617 * 110.95440 * 359.72480 * 5 4 3 7 7 C 1.36648 * 123.34988 * 85.00368 * 3 2 1 8 8 C 1.46578 * 125.45793 * 359.97438 * 7 3 2 9 9 O 1.21701 * 120.00289 * 0.02562 * 8 7 3 10 10 N 1.34782 * 119.99776 * 180.02562 * 8 7 3 11 11 C 1.46500 * 119.99839 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.26192 * 35.32546 * 11 10 8 13 13 C 1.50884 * 109.36425 * 155.00041 * 11 10 8 14 14 C 1.52571 * 109.37639 * 212.08815 * 13 11 10 15 15 C 1.47089 * 114.32746 * 274.97477 * 14 13 11 16 16 C 1.54869 * 110.32142 * 62.80611 * 15 14 13 17 17 N 1.44581 * 109.59866 * 288.73233 * 16 15 14 18 18 C 1.36937 * 118.64433 * 270.72503 * 17 16 15 19 19 H 1.08000 * 119.99888 * 26.49899 * 18 17 16 20 20 C 1.38808 * 120.00070 * 206.50010 * 18 17 16 21 21 N 1.31621 * 119.99870 * 15.66260 * 20 18 17 22 22 Si 1.86795 * 120.00070 * 195.66198 * 20 18 17 23 23 H 1.48493 * 109.47322 * 59.99795 * 22 20 18 24 24 H 1.48502 * 109.47114 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47151 * 299.99846 * 22 20 18 26 26 C 1.47600 * 122.71149 * 90.70253 * 17 16 15 27 27 H 1.08990 * 109.47456 * 59.99729 * 1 2 3 28 28 H 1.09003 * 109.47247 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47087 * 299.99655 * 1 2 3 30 30 H 1.09006 * 109.47087 * 240.00345 * 2 1 3 31 31 H 1.08999 * 109.47611 * 120.00015 * 2 1 3 32 32 H 1.07999 * 122.44704 * 0.02562 * 4 3 2 33 33 H 1.07996 * 124.52198 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99980 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.48767 * 92.11482 * 13 11 10 36 36 H 1.08999 * 109.48770 * 332.06636 * 13 11 10 37 37 H 1.09003 * 108.51175 * 36.23257 * 14 13 11 38 38 H 1.09000 * 108.50707 * 153.72074 * 14 13 11 39 39 H 1.09001 * 109.32732 * 183.06587 * 15 14 13 40 40 H 1.08992 * 109.33224 * 302.71747 * 15 14 13 41 41 H 1.08998 * 109.44539 * 48.77123 * 16 15 14 42 42 H 1.09000 * 109.44774 * 168.69218 * 16 15 14 43 43 H 0.97000 * 120.00069 * 179.97438 * 21 20 18 44 44 H 1.09001 * 108.95052 * 78.57869 * 26 17 16 45 45 H 1.08999 * 108.95056 * 197.20214 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3790 2.0999 -1.1439 5 6 2.8051 3.3539 -0.9526 6 16 2.7862 3.7585 0.7048 7 6 2.1890 2.1623 1.1371 8 6 1.8997 1.7026 2.4985 9 8 1.4834 0.5741 2.6842 10 7 2.0946 2.5296 3.5448 11 6 1.8049 2.0703 4.9054 12 1 2.0564 1.0131 4.9893 13 6 2.6336 2.8612 5.8875 14 6 2.9805 1.9789 7.0829 15 6 1.9459 1.9400 8.1277 16 6 0.6380 1.3287 7.5671 17 7 0.0209 2.2611 6.6504 18 6 -0.8649 3.1802 7.1462 19 1 -0.7895 3.5029 8.1741 20 6 -1.8597 3.6970 6.3276 21 7 -2.1542 3.0997 5.1924 22 14 -2.7805 5.2403 6.8373 23 1 -1.8202 6.3629 6.9873 24 1 -3.7851 5.5830 5.7987 25 1 -3.4688 5.0014 8.1313 26 6 0.3068 2.2635 5.2023 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.3124 1.6539 -2.1253 33 1 3.1147 4.0223 -1.7423 34 1 2.4260 3.4292 3.3967 35 1 2.0661 3.7275 6.2274 36 1 3.5513 3.1947 5.4031 37 1 3.1501 0.9632 6.7257 38 1 3.9064 2.3453 7.5262 39 1 2.2986 1.3340 8.9623 40 1 1.7470 2.9533 8.4765 41 1 0.8668 0.4013 7.0422 42 1 -0.0469 1.1207 8.3891 43 1 -2.8496 3.4606 4.6205 44 1 -0.2543 1.4575 4.7294 45 1 -0.0178 3.2141 4.7791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034541952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:51 Heat of formation + Delta-G solvation = -9.644288 kcal Electronic energy + Delta-G solvation = -25945.414124 eV Core-core repulsion = 22474.947104 eV Total energy + Delta-G solvation = -3470.467019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15464 -39.66563 -38.60651 -36.04657 -35.21144 -33.66590 -32.71029 -32.07106 -29.94565 -27.94136 -26.47872 -25.86071 -24.77873 -23.32418 -22.51455 -21.57811 -20.97898 -19.71879 -19.06308 -18.59673 -17.23391 -17.02179 -16.88533 -16.25582 -16.07843 -15.68259 -15.38037 -15.24117 -15.04026 -14.70968 -14.52307 -14.26378 -14.10380 -13.89192 -13.75864 -13.29275 -13.01834 -12.95396 -12.85220 -12.78454 -12.46460 -12.42639 -12.21441 -12.06965 -12.02350 -11.84792 -11.66552 -11.54476 -11.41027 -11.16945 -10.88666 -10.49714 -10.13630 -9.71538 -9.39497 -8.66674 -7.84416 -5.33312 -0.45380 0.52316 0.96213 1.43556 1.45635 1.47189 1.54437 2.08500 2.25819 2.52137 3.27747 3.62557 3.87361 3.90305 3.91817 4.05284 4.17429 4.27290 4.32549 4.41132 4.44696 4.46910 4.51849 4.62596 4.75426 4.82548 4.86769 4.93791 5.06222 5.07215 5.08724 5.12349 5.27887 5.29362 5.30852 5.36558 5.42362 5.45042 5.54567 5.56025 5.62843 5.68533 5.79598 6.38604 6.51849 7.14602 7.21545 7.92587 8.33682 9.19490 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.004225 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.298772 B = 6625.444470 C = 7285.963250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 C -0.025 4.025 4 C -0.156 4.156 5 C -0.212 4.212 6 S 0.218 5.782 7 C -0.306 4.306 8 C 0.580 3.420 9 O -0.562 6.562 10 N -0.710 5.710 11 C 0.138 3.862 12 H 0.062 0.938 13 C -0.108 4.108 14 C -0.099 4.099 15 C -0.132 4.132 16 C 0.146 3.854 17 N -0.600 5.600 18 C -0.264 4.264 19 H 0.071 0.929 20 C -0.050 4.050 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.273 1.273 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.197 3.803 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.020 0.980 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.172 0.828 33 H 0.205 0.795 34 H 0.404 0.596 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.029 0.971 42 H 0.038 0.962 43 H 0.246 0.754 44 H -0.026 1.026 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.100 1.389 -11.503 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 C -0.041 4.041 4 C -0.186 4.186 5 C -0.350 4.350 6 S 0.486 5.514 7 C -0.426 4.426 8 C 0.369 3.631 9 O -0.443 6.443 10 N -0.361 5.361 11 C 0.033 3.967 12 H 0.080 0.920 13 C -0.146 4.146 14 C -0.137 4.137 15 C -0.172 4.172 16 C 0.019 3.981 17 N -0.323 5.323 18 C -0.394 4.394 19 H 0.089 0.911 20 C -0.245 4.245 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.199 1.199 24 H -0.225 1.225 25 H -0.201 1.201 26 C 0.071 3.929 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.189 0.811 33 H 0.222 0.778 34 H 0.239 0.761 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.055 0.945 44 H -0.007 1.007 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.091 1.962 -10.632 18.564 hybrid contribution -1.497 -0.298 -0.686 1.674 sum 13.594 1.664 -11.318 17.766 Atomic orbital electron populations 1.21547 0.94873 1.01941 1.00664 1.20378 0.95973 0.91044 1.03475 1.19821 0.95475 0.97648 0.91149 1.20101 1.04137 0.94601 0.99764 1.25700 1.06221 1.01269 1.01763 1.82847 1.59424 1.09168 0.99942 1.24425 1.19648 1.01923 0.96617 1.17402 0.76916 0.84853 0.83978 1.90758 1.47034 1.20848 1.85675 1.45936 1.67038 1.16758 1.06371 1.21376 0.96505 0.98380 0.80481 0.92004 1.21232 0.98733 0.99032 0.95598 1.20224 0.99010 0.99230 0.95225 1.21321 0.96242 1.01325 0.98298 1.20955 0.93782 0.91011 0.92323 1.43733 1.48559 1.36933 1.03039 1.19503 1.06181 1.16402 0.97319 0.91114 1.25830 0.98135 1.02533 0.98016 1.70298 1.33010 1.40305 1.14656 0.85378 0.78002 0.80265 0.77051 1.19916 1.22497 1.20095 1.20884 0.90153 0.98268 0.83644 0.91554 0.91567 0.96117 0.88339 0.91526 0.81088 0.77831 0.76074 0.92102 0.89762 0.92917 0.90165 0.90350 0.93072 0.95286 0.94354 0.94510 1.00744 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.78 71.98 0.70 -3.17 16 2 C -0.07 -1.89 5.50 29.85 0.16 -1.73 16 3 C -0.02 -0.67 5.16 -20.42 -0.11 -0.77 16 4 C -0.16 -2.98 9.96 21.08 0.21 -2.77 16 5 C -0.21 -3.48 10.92 66.81 0.73 -2.75 16 6 S 0.22 4.59 22.16 -56.49 -1.25 3.34 16 7 C -0.31 -9.32 6.45 24.07 0.16 -9.16 16 8 C 0.58 22.23 7.74 86.42 0.67 22.90 16 9 O -0.56 -25.58 13.38 -4.35 -0.06 -25.63 16 10 N -0.71 -25.48 4.97 -448.36 -2.23 -27.71 16 11 C 0.14 5.56 2.27 44.62 0.10 5.66 16 12 H 0.06 2.66 6.75 -2.39 -0.02 2.65 16 13 C -0.11 -3.56 5.06 29.76 0.15 -3.41 16 14 C -0.10 -2.95 5.15 28.61 0.15 -2.81 16 15 C -0.13 -4.40 5.74 29.39 0.17 -4.23 16 16 C 0.15 6.26 5.66 87.38 0.49 6.75 16 17 N -0.60 -30.85 2.27 -698.38 -1.59 -32.44 16 18 C -0.26 -14.62 9.44 84.03 0.79 -13.82 16 19 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -2.85 4.87 84.86 0.41 -2.44 16 21 N -0.94 -57.84 11.01 21.65 0.24 -57.61 16 22 Si 0.97 45.49 29.58 68.60 2.03 47.52 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.20 10.21 4.25 86.49 0.37 10.58 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.02 0.76 7.60 -2.38 -0.02 0.74 16 30 H 0.10 1.96 8.12 -2.38 -0.02 1.94 16 31 H 0.07 2.21 6.33 -2.39 -0.02 2.19 16 32 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.20 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.40 12.07 7.66 -92.71 -0.71 11.36 16 35 H 0.06 2.30 7.48 -2.39 -0.02 2.28 16 36 H 0.08 2.23 7.94 -2.39 -0.02 2.21 16 37 H 0.05 1.57 7.36 -2.39 -0.02 1.55 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 42 H 0.04 1.67 7.99 -2.39 -0.02 1.65 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H -0.03 -1.59 8.03 -2.39 -0.02 -1.61 16 45 H 0.05 2.66 6.31 -2.39 -0.02 2.65 16 Total: -1.00 -73.43 365.29 2.58 -70.85 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.28 Total: 22.84 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.16 Total: -1.17 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -3.58 Total: -117.75 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.06 Total: -25.63 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.25 Total: 3.34 kcal Total: -73.43 2.58 -70.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034541952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.206 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds