Wall clock time and date at job start Tue Mar 31 2020 12:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32773 * 124.71280 * 2 1 4 4 C 1.44428 * 113.08227 * 180.02562 * 3 2 1 5 5 C 1.47188 * 123.45960 * 179.97438 * 4 3 2 6 6 O 1.21643 * 119.99969 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00049 * 0.02946 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27659 * 7 5 4 9 9 H 1.09004 * 109.47372 * 34.71852 * 8 7 5 10 10 C 1.52999 * 109.46963 * 154.72290 * 8 7 5 11 11 C 1.53003 * 109.47087 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47241 * 300.00042 * 11 10 8 13 13 H 1.08995 * 109.47096 * 299.99819 * 12 11 10 14 14 N 1.46498 * 109.47426 * 179.97438 * 12 11 10 15 15 C 1.36937 * 120.00256 * 154.99718 * 14 12 11 16 16 H 1.08000 * 119.99592 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99920 * 179.97438 * 15 14 12 18 18 N 1.31613 * 120.00369 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99822 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.46926 * 90.00263 * 19 17 15 21 21 H 1.48500 * 109.46827 * 210.00481 * 19 17 15 22 22 H 1.48499 * 109.46759 * 330.00368 * 19 17 15 23 23 C 1.52999 * 109.47114 * 59.99975 * 12 11 10 24 24 C 1.52997 * 109.47036 * 274.72131 * 8 7 5 25 25 C 1.36007 * 113.07801 * 0.24766 * 4 3 2 26 26 C 1.50703 * 124.59231 * 179.73610 * 25 4 3 27 27 S 1.70447 * 110.81697 * 359.62249 * 25 4 3 28 28 H 1.09005 * 109.46734 * 90.00068 * 1 2 3 29 29 H 1.08994 * 109.47577 * 210.00308 * 1 2 3 30 30 H 1.08997 * 109.47358 * 330.00705 * 1 2 3 31 31 H 1.07996 * 123.45911 * 0.05422 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.08997 * 109.46923 * 299.99333 * 10 8 7 34 34 H 1.08995 * 109.47266 * 59.99845 * 10 8 7 35 35 H 1.09004 * 109.47044 * 59.99688 * 11 10 8 36 36 H 1.08997 * 109.47066 * 179.97438 * 11 10 8 37 37 H 0.97004 * 120.00049 * 335.00330 * 14 12 11 38 38 H 0.97004 * 120.00542 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.47266 * 59.99948 * 23 12 11 40 40 H 1.09000 * 109.47204 * 180.02562 * 23 12 11 41 41 H 1.09009 * 109.47238 * 300.00198 * 24 8 7 42 42 H 1.08997 * 109.47293 * 60.00168 * 24 8 7 43 43 H 1.09000 * 109.47353 * 89.99585 * 26 25 4 44 44 H 1.08995 * 109.47100 * 209.99794 * 26 25 4 45 45 H 1.09004 * 109.46706 * 329.99414 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0006 5 6 4.7201 1.8394 -0.0013 6 8 5.8946 1.5227 -0.0022 7 7 4.3733 3.1418 -0.0007 8 6 5.4109 4.1760 -0.0075 9 1 6.2614 3.8337 -0.5972 10 6 4.8478 5.4592 -0.6218 11 6 5.9312 6.5396 -0.6283 12 6 6.3836 6.8169 0.8067 13 1 5.5330 7.1590 1.3961 14 7 7.4214 7.8509 0.8005 15 6 7.6219 8.6265 1.9111 16 1 7.0152 8.4756 2.7917 17 6 8.6056 9.6058 1.9053 18 7 9.3453 9.7894 0.8322 19 14 8.8797 10.6634 3.4206 20 1 9.8813 10.0133 4.3033 21 1 9.3771 12.0003 3.0077 22 1 7.5982 10.8171 4.1551 23 6 6.9467 5.5337 1.4210 24 6 5.8638 4.4535 1.4273 25 6 3.9476 -0.5328 -0.0064 26 6 5.3333 -1.1251 -0.0141 27 16 2.5064 -1.4427 -0.0008 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.8615 2.0940 0.0009 32 1 3.4368 3.3943 -0.0003 33 1 4.5253 5.2615 -1.6440 34 1 3.9974 5.8015 -0.0321 35 1 6.7820 6.1974 -1.2177 36 1 5.5302 7.4536 -1.0663 37 1 7.9665 7.9862 0.0096 38 1 10.0325 10.4740 0.8280 39 1 7.7973 5.1916 0.8316 40 1 7.2685 5.7311 2.4435 41 1 5.0133 4.7958 2.0170 42 1 6.2649 3.5393 1.8649 43 1 5.6716 -1.2715 1.0117 44 1 5.3156 -2.0844 -0.5313 45 1 6.0151 -0.4477 -0.5284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034684885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:49 Heat of formation + Delta-G solvation = -20.987710 kcal Electronic energy + Delta-G solvation = -24496.992756 eV Core-core repulsion = 21026.033849 eV Total energy + Delta-G solvation = -3470.958907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.24408 -38.33819 -37.14217 -34.90922 -33.31488 -32.99329 -30.76032 -30.37740 -29.57470 -27.50990 -25.55956 -24.15072 -23.21050 -22.32314 -21.16131 -20.72388 -19.71099 -19.05776 -17.46552 -17.11815 -16.74293 -15.83228 -15.28205 -15.11914 -14.60339 -14.31205 -14.05464 -13.86851 -13.71868 -13.59190 -13.48811 -13.44504 -13.22979 -12.95495 -12.50831 -12.32027 -12.00118 -11.87338 -11.84734 -11.77933 -11.39650 -11.24885 -11.00695 -10.80118 -10.73171 -10.63469 -10.15958 -10.07528 -9.78754 -9.72513 -9.53948 -9.00805 -8.92819 -8.82794 -8.64219 -6.91387 -5.73100 -3.01423 0.52425 1.14146 1.57384 1.70046 3.23372 3.28296 3.45564 3.50582 3.52120 4.28244 4.56424 4.61796 4.73445 4.88477 4.94219 5.03469 5.08354 5.09697 5.27201 5.31776 5.42010 5.44152 5.54673 5.63412 5.65895 5.69811 5.72238 5.76597 5.87401 5.91361 6.01430 6.05188 6.07057 6.27269 6.31692 6.34945 6.52363 6.60427 6.69797 6.76195 7.02327 7.18429 7.50807 7.73354 8.22041 8.45835 9.56694 10.15656 10.50173 11.49707 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.002227 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.131718 B =12567.305378 C =12863.648742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.203 4.203 3 C -0.110 4.110 4 C -0.171 4.171 5 C 0.578 3.422 6 O -0.535 6.535 7 N -0.719 5.719 8 C 0.146 3.854 9 H 0.088 0.912 10 C -0.119 4.119 11 C -0.120 4.120 12 C 0.177 3.823 13 H 0.046 0.954 14 N -0.726 5.726 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.132 4.132 24 C -0.123 4.123 25 C -0.140 4.140 26 C -0.096 4.096 27 S 0.171 5.829 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.396 0.604 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.256 -23.336 -4.187 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.320 4.320 3 C -0.139 4.139 4 C -0.187 4.187 5 C 0.364 3.636 6 O -0.414 6.414 7 N -0.369 5.369 8 C 0.043 3.957 9 H 0.106 0.894 10 C -0.157 4.157 11 C -0.159 4.159 12 C 0.068 3.932 13 H 0.064 0.936 14 N -0.366 5.366 15 C -0.367 4.367 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.173 4.173 24 C -0.162 4.162 25 C -0.260 4.260 26 C -0.154 4.154 27 S 0.438 5.562 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.164 0.836 32 H 0.230 0.770 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.738 -24.960 -4.027 31.470 hybrid contribution 0.272 2.333 0.667 2.442 sum -18.466 -22.627 -3.360 29.398 Atomic orbital electron populations 1.20340 0.87464 1.03326 1.02896 1.24257 1.00343 0.96088 1.11268 1.21106 0.91023 0.99341 1.02428 1.20147 0.93403 0.93086 1.12088 1.17547 0.87724 0.82143 0.76189 1.90746 1.18728 1.81701 1.50220 1.46020 1.10363 1.05454 1.75056 1.21119 0.90477 0.86415 0.97724 0.89365 1.21751 0.99280 0.94374 1.00331 1.21749 0.97634 0.97447 0.99070 1.20234 0.91796 0.88404 0.92811 0.93637 1.42434 1.39818 1.38228 1.16114 1.19241 1.14022 1.10584 0.92865 0.91251 1.24737 0.98987 0.99925 0.97459 1.69658 1.24593 1.36242 1.27727 0.86213 0.77785 0.79909 0.82443 1.21775 1.21826 1.20820 1.22214 0.97229 0.95654 1.02183 1.21886 0.99529 0.99465 0.95355 1.24500 1.01791 0.96655 1.03059 1.20654 0.90329 1.00750 1.03680 1.83016 0.93530 1.08553 1.71141 0.90659 0.91261 0.90370 0.83588 0.76975 0.91894 0.91612 0.91958 0.91375 0.78310 0.93568 0.92487 0.91840 0.92379 0.92356 0.90179 0.91666 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.35 36.00 0.37 -0.02 16 2 C -0.20 -1.55 6.44 -36.18 -0.23 -1.78 16 3 C -0.11 -0.95 9.75 -39.02 -0.38 -1.33 16 4 C -0.17 -1.91 5.98 -104.63 -0.63 -2.54 16 5 C 0.58 7.74 7.76 -12.63 -0.10 7.64 16 6 O -0.54 -8.86 13.72 5.24 0.07 -8.78 16 7 N -0.72 -8.34 5.06 -54.96 -0.28 -8.62 16 8 C 0.15 1.99 2.46 -67.93 -0.17 1.82 16 9 H 0.09 1.38 7.57 -51.93 -0.39 0.99 16 10 C -0.12 -1.49 5.39 -26.73 -0.14 -1.64 16 11 C -0.12 -1.94 5.39 -26.73 -0.14 -2.08 16 12 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 13 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 14 N -0.73 -18.27 5.12 -53.43 -0.27 -18.55 16 15 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 19 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C -0.13 -2.44 5.50 -26.75 -0.15 -2.58 16 24 C -0.12 -1.88 5.49 -26.75 -0.15 -2.02 16 25 C -0.14 -1.46 6.34 -35.11 -0.22 -1.68 16 26 C -0.10 -0.96 9.60 36.01 0.35 -0.61 16 27 S 0.17 1.34 22.94 -107.50 -2.47 -1.12 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.15 0.93 7.10 -52.49 -0.37 0.56 16 32 H 0.40 3.48 7.15 -40.82 -0.29 3.18 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 38 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.11 1.30 5.94 -51.93 -0.31 0.99 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -32.58 375.04 -10.76 -43.34 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.15 Total: 9.05 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.02 Total: -10.80 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.17 Total: -54.93 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.47 Total: -1.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.58 -10.76 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034684885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.356 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds