Wall clock time and date at job start Tue Mar 31 2020 12:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32773 * 124.71280 * 2 1 4 4 C 1.44428 * 113.08227 * 180.02562 * 3 2 1 5 5 C 1.47188 * 123.45960 * 179.97438 * 4 3 2 6 6 O 1.21643 * 119.99969 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00049 * 0.02946 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27659 * 7 5 4 9 9 H 1.09004 * 109.47372 * 34.71852 * 8 7 5 10 10 C 1.52999 * 109.46963 * 154.72290 * 8 7 5 11 11 C 1.53003 * 109.47087 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47241 * 300.00042 * 11 10 8 13 13 H 1.08995 * 109.47096 * 299.99819 * 12 11 10 14 14 N 1.46498 * 109.47426 * 179.97438 * 12 11 10 15 15 C 1.36937 * 120.00256 * 154.99718 * 14 12 11 16 16 H 1.08000 * 119.99592 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99920 * 179.97438 * 15 14 12 18 18 N 1.31613 * 120.00369 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99822 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.46926 * 90.00263 * 19 17 15 21 21 H 1.48500 * 109.46827 * 210.00481 * 19 17 15 22 22 H 1.48499 * 109.46759 * 330.00368 * 19 17 15 23 23 C 1.52999 * 109.47114 * 59.99975 * 12 11 10 24 24 C 1.52997 * 109.47036 * 274.72131 * 8 7 5 25 25 C 1.36007 * 113.07801 * 0.24766 * 4 3 2 26 26 C 1.50703 * 124.59231 * 179.73610 * 25 4 3 27 27 S 1.70447 * 110.81697 * 359.62249 * 25 4 3 28 28 H 1.09005 * 109.46734 * 90.00068 * 1 2 3 29 29 H 1.08994 * 109.47577 * 210.00308 * 1 2 3 30 30 H 1.08997 * 109.47358 * 330.00705 * 1 2 3 31 31 H 1.07996 * 123.45911 * 0.05422 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.08997 * 109.46923 * 299.99333 * 10 8 7 34 34 H 1.08995 * 109.47266 * 59.99845 * 10 8 7 35 35 H 1.09004 * 109.47044 * 59.99688 * 11 10 8 36 36 H 1.08997 * 109.47066 * 179.97438 * 11 10 8 37 37 H 0.97004 * 120.00049 * 335.00330 * 14 12 11 38 38 H 0.97004 * 120.00542 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.47266 * 59.99948 * 23 12 11 40 40 H 1.09000 * 109.47204 * 180.02562 * 23 12 11 41 41 H 1.09009 * 109.47238 * 300.00198 * 24 8 7 42 42 H 1.08997 * 109.47293 * 60.00168 * 24 8 7 43 43 H 1.09000 * 109.47353 * 89.99585 * 26 25 4 44 44 H 1.08995 * 109.47100 * 209.99794 * 26 25 4 45 45 H 1.09004 * 109.46706 * 329.99414 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0006 5 6 4.7201 1.8394 -0.0013 6 8 5.8946 1.5227 -0.0022 7 7 4.3733 3.1418 -0.0007 8 6 5.4109 4.1760 -0.0075 9 1 6.2614 3.8337 -0.5972 10 6 4.8478 5.4592 -0.6218 11 6 5.9312 6.5396 -0.6283 12 6 6.3836 6.8169 0.8067 13 1 5.5330 7.1590 1.3961 14 7 7.4214 7.8509 0.8005 15 6 7.6219 8.6265 1.9111 16 1 7.0152 8.4756 2.7917 17 6 8.6056 9.6058 1.9053 18 7 9.3453 9.7894 0.8322 19 14 8.8797 10.6634 3.4206 20 1 9.8813 10.0133 4.3033 21 1 9.3771 12.0003 3.0077 22 1 7.5982 10.8171 4.1551 23 6 6.9467 5.5337 1.4210 24 6 5.8638 4.4535 1.4273 25 6 3.9476 -0.5328 -0.0064 26 6 5.3333 -1.1251 -0.0141 27 16 2.5064 -1.4427 -0.0008 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.8615 2.0940 0.0009 32 1 3.4368 3.3943 -0.0003 33 1 4.5253 5.2615 -1.6440 34 1 3.9974 5.8015 -0.0321 35 1 6.7820 6.1974 -1.2177 36 1 5.5302 7.4536 -1.0663 37 1 7.9665 7.9862 0.0096 38 1 10.0325 10.4740 0.8280 39 1 7.7973 5.1916 0.8316 40 1 7.2685 5.7311 2.4435 41 1 5.0133 4.7958 2.0170 42 1 6.2649 3.5393 1.8649 43 1 5.6716 -1.2715 1.0117 44 1 5.3156 -2.0844 -0.5313 45 1 6.0151 -0.4477 -0.5284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034684885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:48 Heat of formation + Delta-G solvation = -40.930544 kcal Electronic energy + Delta-G solvation = -24497.857542 eV Core-core repulsion = 21026.033849 eV Total energy + Delta-G solvation = -3471.823693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26398 -39.54508 -38.03557 -36.40620 -34.69720 -33.90008 -32.50618 -31.70122 -30.36427 -28.95255 -26.43071 -25.55100 -24.51740 -23.62988 -22.33593 -21.74973 -20.97647 -20.06470 -19.07324 -18.19154 -17.75101 -16.94929 -16.73399 -16.23644 -15.91321 -15.39914 -15.32852 -15.04878 -15.00095 -14.70319 -14.49036 -14.22313 -14.10702 -13.97893 -13.81221 -13.43425 -13.16250 -13.09504 -12.88016 -12.82781 -12.58751 -12.48450 -12.40145 -12.30097 -12.12913 -12.03739 -11.83850 -11.65161 -11.46434 -11.20889 -10.86647 -10.73801 -10.07847 -9.55174 -9.35348 -8.99325 -7.93191 -5.21342 -0.21256 0.50532 0.92598 0.98333 1.46449 1.48450 1.56517 2.24559 2.34700 2.56852 3.39520 3.65054 3.73276 3.79729 3.86960 3.90694 4.14461 4.25294 4.29325 4.36768 4.39974 4.50155 4.57776 4.59421 4.61775 4.64934 4.65670 4.81514 4.85517 4.90519 4.99257 5.08100 5.11085 5.12510 5.19053 5.24530 5.25438 5.28324 5.42868 5.48688 5.54810 5.56072 5.63781 6.29568 6.58858 7.26133 7.34895 8.12639 8.35048 9.30531 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.002227 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.131718 B =12567.305378 C =12863.648742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.201 4.201 3 C -0.120 4.120 4 C -0.190 4.190 5 C 0.572 3.428 6 O -0.577 6.577 7 N -0.704 5.704 8 C 0.154 3.846 9 H 0.064 0.936 10 C -0.105 4.105 11 C -0.113 4.113 12 C 0.173 3.827 13 H 0.048 0.952 14 N -0.739 5.739 15 C -0.235 4.235 16 H 0.075 0.925 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.971 3.029 20 H -0.291 1.291 21 H -0.295 1.295 22 H -0.268 1.268 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.165 4.165 26 C -0.094 4.094 27 S 0.211 5.789 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.169 0.831 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.803 -24.328 -3.883 33.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.317 4.317 3 C -0.148 4.148 4 C -0.207 4.207 5 C 0.360 3.640 6 O -0.458 6.458 7 N -0.355 5.355 8 C 0.050 3.950 9 H 0.083 0.917 10 C -0.143 4.143 11 C -0.152 4.152 12 C 0.065 3.935 13 H 0.066 0.934 14 N -0.379 5.379 15 C -0.367 4.367 16 H 0.093 0.907 17 C -0.272 4.272 18 N -0.622 5.622 19 Si 0.800 3.200 20 H -0.218 1.218 21 H -0.222 1.222 22 H -0.192 1.192 23 C -0.163 4.163 24 C -0.150 4.150 25 C -0.285 4.285 26 C -0.152 4.152 27 S 0.478 5.522 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.186 0.814 32 H 0.251 0.749 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.366 -25.983 -3.710 34.484 hybrid contribution 1.319 2.509 0.568 2.891 sum -21.047 -23.474 -3.142 31.684 Atomic orbital electron populations 1.20473 0.85240 1.04447 1.03968 1.24700 1.01792 0.95601 1.09652 1.21253 0.89602 1.00854 1.03049 1.20168 0.94145 0.92661 1.13701 1.17986 0.87733 0.82915 0.75354 1.90734 1.20602 1.82372 1.52112 1.45783 1.10811 1.04521 1.74412 1.20849 0.90628 0.87509 0.96064 0.91738 1.21649 0.98330 0.92093 1.02251 1.21636 0.98541 0.98835 0.96160 1.20479 0.90384 0.87202 0.95428 0.93366 1.42680 1.40903 1.39290 1.14984 1.19624 1.13323 1.10182 0.93605 0.90707 1.25555 0.99400 1.01830 1.00370 1.69818 1.25486 1.37136 1.29799 0.85174 0.77999 0.77753 0.79084 1.21790 1.22207 1.19234 1.22019 0.97782 0.96319 1.00197 1.21744 0.98776 0.97528 0.96968 1.24734 1.03046 0.97297 1.03465 1.20577 0.90131 1.01100 1.03420 1.82858 0.91670 1.07954 1.69762 0.89506 0.90293 0.89138 0.81381 0.74886 0.89372 0.89312 0.92926 0.91305 0.79726 0.94139 0.94306 0.94114 0.90632 0.93585 0.90458 0.89603 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.35 71.24 0.74 0.25 16 2 C -0.20 -2.45 6.44 24.51 0.16 -2.29 16 3 C -0.12 -1.74 9.75 22.67 0.22 -1.52 16 4 C -0.19 -4.04 5.98 -19.87 -0.12 -4.16 16 5 C 0.57 15.14 7.76 86.59 0.67 15.81 16 6 O -0.58 -19.77 13.72 -4.17 -0.06 -19.83 16 7 N -0.70 -15.14 5.06 -446.02 -2.25 -17.40 16 8 C 0.15 4.02 2.46 44.99 0.11 4.14 16 9 H 0.06 2.04 7.57 -2.39 -0.02 2.02 16 10 C -0.10 -2.36 5.39 30.59 0.16 -2.20 16 11 C -0.11 -3.54 5.39 30.59 0.16 -3.37 16 12 C 0.17 6.80 2.77 44.99 0.12 6.92 16 13 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 14 N -0.74 -37.93 5.12 -322.96 -1.65 -39.58 16 15 C -0.24 -13.26 9.93 84.03 0.83 -12.42 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 17 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 18 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 19 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.12 -4.62 5.50 30.58 0.17 -4.45 16 24 C -0.11 -3.32 5.49 30.58 0.17 -3.15 16 25 C -0.16 -3.32 6.34 25.17 0.16 -3.16 16 26 C -0.09 -1.91 9.60 71.24 0.68 -1.23 16 27 S 0.21 2.83 22.94 -56.49 -1.30 1.54 16 28 H 0.09 0.36 8.14 -2.38 -0.02 0.35 16 29 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.17 1.53 7.10 -2.91 -0.02 1.51 16 32 H 0.41 5.96 7.15 -92.71 -0.66 5.29 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.37 20.55 7.80 -92.71 -0.72 19.82 16 38 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 2.06 5.94 -2.39 -0.01 2.05 16 Total: -1.00 -72.77 375.04 1.38 -71.39 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.38 Total: 30.30 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 4.71 Total: -15.03 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -3.63 Total: -117.33 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.06 Total: -19.83 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.30 Total: 1.54 kcal Total: -72.77 1.38 -71.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034684885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.462 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds