Wall clock time and date at job start Tue Mar 31 2020 13:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.33818 * 124.52139 * 89.72214 * 3 2 1 5 5 C 1.37473 * 115.10054 * 179.85860 * 4 3 2 6 6 C 1.36647 * 113.29718 * 0.41757 * 5 4 3 7 7 C 1.46581 * 125.45786 * 179.79427 * 6 5 4 8 8 O 1.21698 * 120.00193 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99972 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99959 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47263 * 324.99774 * 10 9 7 12 12 C 1.53004 * 109.46892 * 84.99838 * 10 9 7 13 13 C 1.52998 * 109.46595 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47429 * 300.00042 * 13 12 10 15 15 H 1.09004 * 109.46977 * 300.00142 * 14 13 12 16 16 N 1.46500 * 109.47075 * 180.02562 * 14 13 12 17 17 C 1.36940 * 119.99726 * 84.99868 * 16 14 13 18 18 H 1.07997 * 120.00340 * 359.97438 * 17 16 14 19 19 C 1.38820 * 119.99787 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99914 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46879 * 60.00391 * 21 19 17 23 23 H 1.48496 * 109.47191 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47229 * 300.00451 * 21 19 17 25 25 C 1.53001 * 109.46931 * 60.00231 * 14 13 12 26 26 C 1.52992 * 109.47067 * 299.99869 * 25 14 13 27 27 S 1.70618 * 124.52482 * 270.02805 * 3 2 1 28 28 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 33 33 H 1.07999 * 122.45119 * 0.02562 * 4 3 2 34 34 H 1.08000 * 123.35166 * 180.21806 * 5 4 3 35 35 H 0.97001 * 119.99723 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47036 * 299.99693 * 12 10 9 37 37 H 1.08995 * 109.47219 * 59.99909 * 12 10 9 38 38 H 1.09005 * 109.47193 * 179.97438 * 13 12 10 39 39 H 1.09006 * 109.47547 * 60.00437 * 13 12 10 40 40 H 0.96997 * 120.00152 * 264.99866 * 16 14 13 41 41 H 0.97003 * 120.00019 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.46700 * 180.02562 * 25 14 13 43 43 H 1.08996 * 109.46783 * 60.00328 * 25 14 13 44 44 H 1.09004 * 109.47256 * 300.00344 * 26 25 14 45 45 H 1.08997 * 109.47119 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2802 2.1375 1.1025 5 6 2.7362 3.4147 0.8775 6 6 2.8453 3.7238 -0.4490 7 6 3.2994 5.0090 -0.9882 8 8 3.6175 5.9078 -0.2320 9 7 3.3645 5.1953 -2.3215 10 6 3.8189 6.4796 -2.8603 11 1 3.4796 7.2865 -2.2109 12 6 5.3472 6.4906 -2.9318 13 6 5.8216 7.8317 -3.4951 14 6 5.2440 8.0286 -4.8981 15 1 5.5833 7.2213 -5.5473 16 7 5.6988 9.3124 -5.4377 17 6 6.9117 9.3993 -6.0674 18 1 7.5332 8.5216 -6.1659 19 6 7.3424 10.6158 -6.5792 20 7 6.5852 11.6856 -6.4587 21 14 8.9966 10.7342 -7.4388 22 1 9.0102 9.8258 -8.6135 23 1 9.2211 12.1311 -7.8901 24 1 10.0739 10.3400 -6.4957 25 6 3.7157 8.0175 -4.8266 26 6 3.2413 6.6764 -4.2634 27 16 2.3541 2.3327 -1.4057 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.1352 1.7407 2.0965 34 1 2.9807 4.1062 1.6703 35 1 3.1113 4.4787 -2.9242 36 1 5.7587 6.3500 -1.9322 37 1 5.6864 5.6837 -3.5812 38 1 6.9104 7.8399 -3.5456 39 1 5.4824 8.6390 -2.8459 40 1 5.1408 10.1008 -5.3490 41 1 6.8864 12.5356 -6.8160 42 1 3.3042 8.1573 -5.8263 43 1 3.3765 8.8247 -4.1775 44 1 3.5806 5.8692 -4.9125 45 1 2.1525 6.6683 -4.2129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034685144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:52 Heat of formation + Delta-G solvation = -19.871420 kcal Electronic energy + Delta-G solvation = -24094.042239 eV Core-core repulsion = 20623.131738 eV Total energy + Delta-G solvation = -3470.910501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08546 -38.53899 -37.68901 -34.86383 -34.16709 -33.03997 -30.77899 -30.39421 -29.20120 -27.32893 -25.49329 -23.63253 -22.78419 -22.38925 -21.82969 -20.71739 -19.84627 -19.15519 -18.12121 -17.01226 -16.59844 -15.97845 -15.50966 -15.13328 -14.98820 -14.64751 -14.37888 -13.94478 -13.81087 -13.67386 -13.54032 -13.26609 -13.00979 -12.73446 -12.50207 -12.31286 -12.02796 -11.98094 -11.79373 -11.60812 -11.41795 -11.20166 -11.03601 -10.79001 -10.74927 -10.66035 -10.20732 -10.10721 -10.05142 -9.75099 -9.56926 -9.13070 -8.94209 -8.87993 -8.81738 -6.91502 -5.72853 -3.01245 0.19819 1.10813 1.53031 2.09639 3.02348 3.09082 3.46182 3.50586 3.51564 4.19292 4.51616 4.60188 4.63938 4.75000 4.91037 4.92519 5.05346 5.06261 5.21484 5.28793 5.33475 5.42558 5.53888 5.62125 5.66684 5.67560 5.69465 5.74129 5.81239 5.87477 5.89939 6.03366 6.05454 6.24852 6.26252 6.31776 6.49619 6.58322 6.66084 6.75007 7.01379 7.17797 7.37146 7.73032 8.07262 8.46040 9.56827 10.15661 10.50254 11.49832 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.002101 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.232205 B =13326.038118 C =13439.601868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.192 4.192 4 C -0.153 4.153 5 C -0.054 4.054 6 C -0.264 4.264 7 C 0.588 3.412 8 O -0.527 6.527 9 N -0.721 5.721 10 C 0.146 3.854 11 H 0.090 0.910 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.177 3.823 15 H 0.046 0.954 16 N -0.725 5.725 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.120 4.120 26 C -0.119 4.119 27 S 0.197 5.803 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.394 0.606 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.890 -25.287 12.813 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.312 4.312 4 C -0.184 4.184 5 C -0.087 4.087 6 C -0.385 4.385 7 C 0.374 3.626 8 O -0.405 6.405 9 N -0.371 5.371 10 C 0.043 3.957 11 H 0.108 0.892 12 C -0.163 4.163 13 C -0.173 4.173 14 C 0.067 3.933 15 H 0.064 0.936 16 N -0.365 5.365 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.159 4.159 26 C -0.158 4.158 27 S 0.465 5.535 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.592 -24.909 11.671 30.682 hybrid contribution 0.802 0.265 0.961 1.279 sum -12.790 -24.643 12.631 30.503 Atomic orbital electron populations 1.21808 0.93974 1.02243 1.02672 1.20164 0.96428 0.89342 1.03602 1.24259 1.07130 1.02071 0.97752 1.19961 1.04677 0.94137 0.99595 1.20769 0.96384 0.96217 0.95289 1.24669 1.16287 0.99419 0.98092 1.16955 0.77594 0.85551 0.82511 1.90850 1.49038 1.42589 1.57992 1.46060 1.67902 1.17148 1.05992 1.21172 0.94965 0.84458 0.95125 0.89162 1.21908 0.94005 0.99451 1.00980 1.22227 1.01358 0.94580 0.99119 1.20243 0.90687 0.90175 0.92203 0.93590 1.42419 1.20863 1.05731 1.67533 1.19199 0.94854 0.94479 1.28295 0.91290 1.24742 0.98621 0.95796 1.01929 1.69651 1.37589 0.99568 1.51396 0.86283 0.83971 0.76554 0.79474 1.21333 1.21739 1.21325 1.21748 0.97744 0.95388 1.01002 1.21760 0.99989 0.99450 0.94596 1.82945 1.60120 1.02606 1.07808 0.92323 0.92137 0.91809 0.89754 0.90550 0.83889 0.82930 0.77213 0.92284 0.92261 0.91748 0.92443 0.78300 0.93519 0.91291 0.91902 0.91524 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.06 -0.27 6.36 -27.89 -0.18 -0.45 16 3 C -0.19 -1.39 5.53 -35.86 -0.20 -1.59 16 4 C -0.15 -1.20 10.00 -41.41 -0.41 -1.62 16 5 C -0.05 -0.54 10.01 -40.44 -0.40 -0.94 16 6 C -0.26 -2.89 6.45 -36.79 -0.24 -3.13 16 7 C 0.59 8.02 7.75 -12.89 -0.10 7.92 16 8 O -0.53 -9.17 16.50 5.19 0.09 -9.09 16 9 N -0.72 -8.58 5.07 -55.14 -0.28 -8.86 16 10 C 0.15 2.01 2.46 -67.93 -0.17 1.84 16 11 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 12 C -0.12 -1.90 5.50 -26.73 -0.15 -2.04 16 13 C -0.13 -2.44 5.50 -26.73 -0.15 -2.58 16 14 C 0.18 3.47 2.77 -67.93 -0.19 3.29 16 15 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 16 N -0.73 -18.22 5.12 -53.42 -0.27 -18.49 16 17 C -0.24 -6.61 9.93 -15.05 -0.15 -6.76 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 21 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 C -0.12 -1.93 5.39 -26.73 -0.14 -2.07 16 26 C -0.12 -1.50 5.39 -26.74 -0.14 -1.65 16 27 S 0.20 1.54 22.10 -107.50 -2.38 -0.84 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.39 3.67 7.72 -40.82 -0.31 3.35 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.38 10.26 7.80 -40.82 -0.32 9.94 16 41 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -32.64 380.43 -11.09 -43.73 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.33 Total: 8.55 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.35 Total: -10.61 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.17 Total: -55.06 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.38 Total: -0.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.64 -11.09 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034685144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.862 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds