Wall clock time and date at job start Tue Mar 31 2020 13:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.33818 * 124.52139 * 89.72214 * 3 2 1 5 5 C 1.37473 * 115.10054 * 179.85860 * 4 3 2 6 6 C 1.36647 * 113.29718 * 0.41757 * 5 4 3 7 7 C 1.46581 * 125.45786 * 179.79427 * 6 5 4 8 8 O 1.21698 * 120.00193 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99972 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99959 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47263 * 324.99774 * 10 9 7 12 12 C 1.53004 * 109.46892 * 84.99838 * 10 9 7 13 13 C 1.52998 * 109.46595 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47429 * 300.00042 * 13 12 10 15 15 H 1.09004 * 109.46977 * 300.00142 * 14 13 12 16 16 N 1.46500 * 109.47075 * 180.02562 * 14 13 12 17 17 C 1.36940 * 119.99726 * 84.99868 * 16 14 13 18 18 H 1.07997 * 120.00340 * 359.97438 * 17 16 14 19 19 C 1.38820 * 119.99787 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99914 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46879 * 60.00391 * 21 19 17 23 23 H 1.48496 * 109.47191 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47229 * 300.00451 * 21 19 17 25 25 C 1.53001 * 109.46931 * 60.00231 * 14 13 12 26 26 C 1.52992 * 109.47067 * 299.99869 * 25 14 13 27 27 S 1.70618 * 124.52482 * 270.02805 * 3 2 1 28 28 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 33 33 H 1.07999 * 122.45119 * 0.02562 * 4 3 2 34 34 H 1.08000 * 123.35166 * 180.21806 * 5 4 3 35 35 H 0.97001 * 119.99723 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47036 * 299.99693 * 12 10 9 37 37 H 1.08995 * 109.47219 * 59.99909 * 12 10 9 38 38 H 1.09005 * 109.47193 * 179.97438 * 13 12 10 39 39 H 1.09006 * 109.47547 * 60.00437 * 13 12 10 40 40 H 0.96997 * 120.00152 * 264.99866 * 16 14 13 41 41 H 0.97003 * 120.00019 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.46700 * 180.02562 * 25 14 13 43 43 H 1.08996 * 109.46783 * 60.00328 * 25 14 13 44 44 H 1.09004 * 109.47256 * 300.00344 * 26 25 14 45 45 H 1.08997 * 109.47119 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2802 2.1375 1.1025 5 6 2.7362 3.4147 0.8775 6 6 2.8453 3.7238 -0.4490 7 6 3.2994 5.0090 -0.9882 8 8 3.6175 5.9078 -0.2320 9 7 3.3645 5.1953 -2.3215 10 6 3.8189 6.4796 -2.8603 11 1 3.4796 7.2865 -2.2109 12 6 5.3472 6.4906 -2.9318 13 6 5.8216 7.8317 -3.4951 14 6 5.2440 8.0286 -4.8981 15 1 5.5833 7.2213 -5.5473 16 7 5.6988 9.3124 -5.4377 17 6 6.9117 9.3993 -6.0674 18 1 7.5332 8.5216 -6.1659 19 6 7.3424 10.6158 -6.5792 20 7 6.5852 11.6856 -6.4587 21 14 8.9966 10.7342 -7.4388 22 1 9.0102 9.8258 -8.6135 23 1 9.2211 12.1311 -7.8901 24 1 10.0739 10.3400 -6.4957 25 6 3.7157 8.0175 -4.8266 26 6 3.2413 6.6764 -4.2634 27 16 2.3541 2.3327 -1.4057 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.1352 1.7407 2.0965 34 1 2.9807 4.1062 1.6703 35 1 3.1113 4.4787 -2.9242 36 1 5.7587 6.3500 -1.9322 37 1 5.6864 5.6837 -3.5812 38 1 6.9104 7.8399 -3.5456 39 1 5.4824 8.6390 -2.8459 40 1 5.1408 10.1008 -5.3490 41 1 6.8864 12.5356 -6.8160 42 1 3.3042 8.1573 -5.8263 43 1 3.3765 8.8247 -4.1775 44 1 3.5806 5.8692 -4.9125 45 1 2.1525 6.6683 -4.2129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034685144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:52 Heat of formation + Delta-G solvation = -39.782967 kcal Electronic energy + Delta-G solvation = -24094.905668 eV Core-core repulsion = 20623.131738 eV Total energy + Delta-G solvation = -3471.773931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17010 -39.53659 -38.70911 -36.39607 -34.79466 -34.56247 -32.52781 -31.71628 -30.13480 -28.67323 -26.31770 -25.40663 -23.71661 -23.30374 -22.94106 -21.91661 -21.14136 -20.16711 -19.16108 -18.79293 -17.53011 -16.90906 -16.84844 -16.30039 -16.13238 -15.68311 -15.38460 -15.18482 -15.05611 -14.95314 -14.67400 -14.36899 -14.05083 -13.80520 -13.48216 -13.31813 -13.15082 -13.10798 -12.85794 -12.78411 -12.49709 -12.37269 -12.32605 -12.18345 -12.08089 -12.05129 -11.70207 -11.66654 -11.48501 -11.24206 -11.14313 -10.83452 -10.20608 -9.64878 -9.52938 -8.98944 -7.92563 -5.20717 -0.52995 0.44745 0.87893 1.37213 1.46837 1.50005 1.55895 2.02277 2.14436 2.57285 3.39828 3.64805 3.71661 3.78037 3.86651 3.90450 4.14707 4.26931 4.33587 4.35177 4.37856 4.41564 4.48873 4.50526 4.57671 4.63560 4.80207 4.83419 4.92537 4.97932 5.04675 5.07743 5.10708 5.15275 5.20967 5.23408 5.26504 5.35854 5.40434 5.42543 5.50759 5.54538 5.62892 6.29901 6.41215 7.08412 7.35374 8.13104 8.35632 9.30844 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.002101 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.232205 B =13326.038118 C =13439.601868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.163 4.163 5 C -0.056 4.056 6 C -0.304 4.304 7 C 0.586 3.414 8 O -0.576 6.576 9 N -0.708 5.708 10 C 0.153 3.847 11 H 0.068 0.932 12 C -0.113 4.113 13 C -0.122 4.122 14 C 0.172 3.828 15 H 0.049 0.951 16 N -0.739 5.739 17 C -0.237 4.237 18 H 0.075 0.925 19 C -0.080 4.080 20 N -0.971 5.971 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.281 1.281 25 C -0.112 4.112 26 C -0.106 4.106 27 S 0.240 5.760 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.808 -28.889 12.395 34.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.303 4.303 4 C -0.193 4.193 5 C -0.090 4.090 6 C -0.424 4.424 7 C 0.374 3.626 8 O -0.458 6.458 9 N -0.358 5.358 10 C 0.048 3.952 11 H 0.086 0.914 12 C -0.152 4.152 13 C -0.163 4.163 14 C 0.064 3.936 15 H 0.067 0.933 16 N -0.378 5.378 17 C -0.369 4.369 18 H 0.093 0.907 19 C -0.272 4.272 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.207 1.207 25 C -0.151 4.151 26 C -0.145 4.145 27 S 0.508 5.492 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.181 0.819 34 H 0.161 0.839 35 H 0.247 0.753 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.525 -28.593 11.238 33.983 hybrid contribution 1.033 1.250 1.159 1.994 sum -13.492 -27.343 12.397 32.915 Atomic orbital electron populations 1.21815 0.93466 1.03115 1.02279 1.20316 0.96729 0.87730 1.04902 1.24708 1.05194 1.03027 0.97353 1.20096 1.04983 0.93278 1.00945 1.20925 0.96028 0.97103 0.94970 1.24493 1.18921 0.99767 0.99175 1.17350 0.76681 0.86037 0.82510 1.90818 1.51365 1.44510 1.59109 1.45829 1.67279 1.16843 1.05869 1.20930 0.93717 0.84883 0.95644 0.91409 1.21769 0.95307 0.97778 1.00331 1.22029 0.99818 0.96082 0.98383 1.20493 0.93245 0.87791 0.92079 0.93285 1.42659 1.20132 1.07277 1.67721 1.19592 0.95659 0.94539 1.27101 0.90699 1.25563 1.02269 0.95690 1.03635 1.69815 1.39396 0.99850 1.53107 0.85238 0.79890 0.76200 0.78610 1.20149 1.22303 1.20739 1.21630 0.94822 0.97430 1.01236 1.21669 1.01435 0.97818 0.93541 1.82709 1.58936 1.00475 1.07035 0.92772 0.92516 0.90369 0.88342 0.89418 0.81888 0.83872 0.75318 0.93469 0.90459 0.93972 0.94220 0.79706 0.94154 0.91168 0.92802 0.89262 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 71.98 0.71 -0.15 16 2 C -0.06 -0.37 6.36 29.85 0.19 -0.18 16 3 C -0.18 -2.14 5.53 24.68 0.14 -2.01 16 4 C -0.16 -2.25 10.00 21.08 0.21 -2.04 16 5 C -0.06 -1.10 10.01 21.72 0.22 -0.88 16 6 C -0.30 -6.40 6.45 24.08 0.16 -6.25 16 7 C 0.59 15.93 7.75 86.42 0.67 16.60 16 8 O -0.58 -20.84 16.50 -4.34 -0.07 -20.91 16 9 N -0.71 -15.85 5.07 -446.59 -2.27 -18.11 16 10 C 0.15 4.05 2.46 44.99 0.11 4.16 16 11 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 12 C -0.11 -3.39 5.50 30.59 0.17 -3.23 16 13 C -0.12 -4.61 5.50 30.59 0.17 -4.44 16 14 C 0.17 6.74 2.77 44.99 0.12 6.87 16 15 H 0.05 1.91 8.08 -2.38 -0.02 1.89 16 16 N -0.74 -37.80 5.12 -322.93 -1.65 -39.46 16 17 C -0.24 -13.32 9.93 84.04 0.83 -12.49 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 20 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 21 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 C -0.11 -3.51 5.39 30.59 0.16 -3.35 16 26 C -0.11 -2.42 5.39 30.59 0.16 -2.25 16 27 S 0.24 3.14 22.10 -56.49 -1.25 1.90 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.41 6.53 7.72 -92.71 -0.72 5.81 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.37 20.50 7.80 -92.71 -0.72 19.78 16 41 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.72 380.43 1.12 -71.60 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.45 Total: 30.09 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.49 Total: -13.82 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -3.64 Total: -117.78 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.07 Total: -20.91 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.25 Total: 1.90 kcal Total: -72.72 1.12 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034685144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.818 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds