Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 S 1.75886 * 125.19972 * 2 1 4 4 C 1.75891 * 90.96733 * 179.97438 * 3 2 1 5 5 C 1.33386 * 109.59176 * 0.23276 * 4 3 2 6 6 C 1.33384 * 125.20335 * 179.97438 * 2 1 3 7 7 C 1.50702 * 122.54036 * 0.02562 * 6 2 1 8 8 C 1.50700 * 109.46948 * 85.00599 * 7 6 2 9 9 O 1.21280 * 119.99976 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99737 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99640 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47445 * 325.00100 * 11 10 8 13 13 C 1.52999 * 109.46949 * 85.00138 * 11 10 8 14 14 C 1.53005 * 109.47253 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46838 * 299.99807 * 14 13 11 16 16 H 1.09000 * 109.47113 * 300.00173 * 15 14 13 17 17 N 1.46492 * 109.47242 * 179.97438 * 15 14 13 18 18 C 1.36944 * 120.00005 * 84.99913 * 17 15 14 19 19 H 1.07995 * 119.99515 * 0.02562 * 18 17 15 20 20 C 1.38809 * 119.99845 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00221 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47418 * 59.99309 * 22 20 18 24 24 H 1.48496 * 109.47262 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46715 * 299.99947 * 22 20 18 26 26 C 1.53003 * 109.46990 * 59.99707 * 15 14 13 27 27 C 1.52994 * 109.47087 * 205.00119 * 11 10 8 28 28 H 1.08996 * 109.47029 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46906 * 120.02416 * 1 2 3 30 30 H 1.09003 * 109.46340 * 240.01967 * 1 2 3 31 31 H 1.08002 * 125.19914 * 179.97438 * 4 3 2 32 32 H 1.08001 * 122.53761 * 179.75296 * 5 4 3 33 33 H 1.09005 * 109.47219 * 205.00274 * 7 6 2 34 34 H 1.08996 * 109.47383 * 325.00505 * 7 6 2 35 35 H 0.96992 * 120.00029 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47542 * 299.99572 * 13 11 10 37 37 H 1.08994 * 109.47410 * 60.00052 * 13 11 10 38 38 H 1.09000 * 109.47261 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.46986 * 59.99650 * 14 13 11 40 40 H 0.97005 * 120.00418 * 265.00446 * 17 15 14 41 41 H 0.97004 * 119.99757 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.47261 * 179.97438 * 26 15 14 43 43 H 1.09008 * 109.47009 * 60.00072 * 26 15 14 44 44 H 1.09008 * 109.47035 * 299.99991 * 27 11 10 45 45 H 1.08994 * 109.47485 * 59.99994 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5209 1.4372 0.0000 4 6 3.9751 0.4478 0.0008 5 6 3.6380 -0.8428 -0.0041 6 6 2.2760 -1.0899 0.0005 7 6 1.7052 -2.4846 0.0005 8 6 1.4010 -2.9029 -1.4149 9 8 1.6261 -2.1435 -2.3333 10 7 0.8799 -4.1214 -1.6603 11 6 0.5837 -4.5278 -3.0362 12 1 0.2442 -3.6626 -3.6056 13 6 1.8471 -5.0998 -3.6823 14 6 1.5380 -5.5236 -5.1196 15 6 0.4414 -6.5906 -5.1119 16 1 0.7806 -7.4561 -4.5428 17 7 0.1449 -6.9961 -6.4880 18 6 0.9001 -7.9642 -7.0944 19 1 1.7140 -8.4290 -6.5579 20 6 0.6195 -8.3480 -8.3985 21 7 -0.3728 -7.7818 -9.0521 22 14 1.6493 -9.6691 -9.2254 23 1 1.5496 -10.9319 -8.4504 24 1 1.1501 -9.8941 -10.6058 25 1 3.0672 -9.2310 -9.2776 26 6 -0.8221 -6.0187 -4.4658 27 6 -0.5127 -5.5949 -3.0280 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3632 -0.5136 0.8902 31 1 4.9863 0.8272 0.0007 32 1 4.3721 -1.6349 -0.0085 33 1 2.4295 -3.1736 0.4353 34 1 0.7883 -2.5020 0.5895 35 1 0.7003 -4.7289 -0.9258 36 1 2.6283 -4.3396 -3.6882 37 1 2.1866 -5.9650 -3.1130 38 1 2.4380 -5.9315 -5.5797 39 1 1.1988 -4.6581 -5.6886 40 1 -0.5864 -6.5788 -6.9698 41 1 -0.5686 -8.0498 -9.9636 42 1 -1.6035 -6.7786 -4.4607 43 1 -1.1613 -5.1531 -5.0349 44 1 -0.1732 -6.4603 -2.4586 45 1 -1.4128 -5.1875 -2.5678 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034748578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = -15.177532 kcal Electronic energy + Delta-G solvation = -24505.023649 eV Core-core repulsion = 21034.316690 eV Total energy + Delta-G solvation = -3470.706959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23343 -38.63143 -37.51862 -34.79624 -33.06141 -32.42840 -31.00330 -30.38891 -29.99034 -27.31573 -25.75249 -23.64537 -22.89962 -22.33547 -21.21644 -20.45190 -19.48945 -18.56509 -17.38604 -17.27867 -16.83918 -16.30591 -15.53410 -15.03731 -14.96816 -14.40032 -14.03833 -13.80423 -13.66804 -13.55437 -13.45229 -13.08243 -13.00399 -12.79127 -12.47595 -12.28184 -12.05842 -11.96250 -11.79398 -11.70549 -11.41124 -11.00883 -10.93590 -10.79058 -10.74421 -10.65055 -10.19726 -10.08553 -9.86707 -9.73980 -9.55863 -8.93829 -8.82285 -8.73542 -8.55291 -6.92117 -5.73553 -3.02000 0.81648 1.44041 1.78421 2.42319 2.62958 3.27648 3.45500 3.49935 3.50931 4.51090 4.61050 4.61294 4.75632 4.85721 4.97648 5.05291 5.08552 5.11720 5.25285 5.29526 5.32132 5.40556 5.54046 5.63465 5.69111 5.70556 5.75454 5.85742 5.88118 5.89964 6.05145 6.16111 6.25777 6.29353 6.30729 6.33300 6.50970 6.59214 6.68744 6.75087 7.01306 7.17517 7.49707 7.72216 8.23785 8.45444 9.56142 10.15047 10.49483 11.49183 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027312 B = 0.002170 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.932068 B =12897.676954 C =13230.631178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.159 4.159 3 S 0.090 5.910 4 C -0.218 4.218 5 C -0.116 4.116 6 C -0.093 4.093 7 C -0.082 4.082 8 C 0.512 3.488 9 O -0.527 6.527 10 N -0.728 5.728 11 C 0.146 3.854 12 H 0.086 0.914 13 C -0.123 4.123 14 C -0.132 4.132 15 C 0.178 3.822 16 H 0.046 0.954 17 N -0.726 5.726 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.121 4.121 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.397 0.603 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 14.644 25.179 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.277 4.277 3 S 0.355 5.645 4 C -0.353 4.353 5 C -0.146 4.146 6 C -0.105 4.105 7 C -0.124 4.124 8 C 0.297 3.703 9 O -0.403 6.403 10 N -0.379 5.379 11 C 0.042 3.958 12 H 0.104 0.896 13 C -0.162 4.162 14 C -0.173 4.173 15 C 0.068 3.932 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.160 4.160 27 C -0.157 4.157 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.180 0.820 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.230 0.770 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.707 16.647 24.427 29.684 hybrid contribution 0.776 -2.369 -0.429 2.530 sum 3.483 14.277 23.998 28.141 Atomic orbital electron populations 1.20343 0.87971 1.02926 1.02933 1.24230 0.99798 0.95229 1.08425 1.84170 0.97155 1.09642 1.73571 1.25427 1.01676 0.96646 1.11566 1.19969 0.95456 0.96563 1.02605 1.18160 0.92873 0.94156 1.05346 1.20350 1.02837 0.94048 0.95155 1.20498 0.77278 0.81558 0.90989 1.90743 1.51189 1.52202 1.46150 1.46184 1.65402 1.16597 1.09750 1.21084 0.95498 0.97798 0.81408 0.89592 1.21885 0.96787 0.99935 0.97615 1.22225 1.01252 1.00210 0.93634 1.20233 0.91605 0.94078 0.87306 0.93647 1.42429 1.38564 1.45632 1.09970 1.19195 1.09823 1.12235 0.95569 0.91305 1.24739 0.98835 1.00362 0.97138 1.69653 1.31325 1.45450 1.11807 0.86286 0.79674 0.81705 0.78638 1.21321 1.21728 1.21321 1.21763 0.99428 1.00983 0.93776 1.21751 0.97417 0.97835 0.98664 0.91443 0.90327 0.90616 0.81983 0.84455 0.88075 0.88192 0.76976 0.92461 0.92390 0.91876 0.92543 0.78312 0.93508 0.91398 0.92011 0.91603 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.53 36.01 0.34 -0.32 16 2 C -0.16 -1.60 6.50 -36.00 -0.23 -1.83 16 3 S 0.09 0.85 23.33 -107.50 -2.51 -1.65 16 4 C -0.22 -2.03 11.23 29.04 0.33 -1.70 16 5 C -0.12 -1.14 9.96 -41.21 -0.41 -1.55 16 6 C -0.09 -0.94 4.29 -106.25 -0.46 -1.40 16 7 C -0.08 -0.66 5.62 -29.03 -0.16 -0.82 16 8 C 0.51 5.93 7.79 -10.98 -0.09 5.84 16 9 O -0.53 -8.63 15.70 5.56 0.09 -8.54 16 10 N -0.73 -7.37 5.08 -53.81 -0.27 -7.64 16 11 C 0.15 1.90 2.45 -67.93 -0.17 1.73 16 12 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 13 C -0.12 -1.83 5.49 -26.73 -0.15 -1.98 16 14 C -0.13 -2.44 5.50 -26.72 -0.15 -2.58 16 15 C 0.18 3.47 2.77 -67.93 -0.19 3.29 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 N -0.73 -18.23 5.12 -53.43 -0.27 -18.51 16 18 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 C -0.12 -1.92 5.39 -26.70 -0.14 -2.06 16 27 C -0.12 -1.43 5.39 -26.71 -0.14 -1.57 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.45 7.96 -51.93 -0.41 0.04 16 31 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.10 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.10 0.57 7.52 -51.93 -0.39 0.18 16 35 H 0.40 2.72 8.60 -40.82 -0.35 2.37 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.38 10.26 7.80 -40.82 -0.32 9.94 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 44 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -33.67 379.84 -10.73 -44.40 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.33 Total: 8.65 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.86 Total: -12.25 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.18 Total: -53.87 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.67 -10.73 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034748578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.225 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds