Wall clock time and date at job start Tue Mar 31 2020 12:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 S 1.75886 * 125.19972 * 2 1 4 4 C 1.75891 * 90.96733 * 179.97438 * 3 2 1 5 5 C 1.33386 * 109.59176 * 0.23276 * 4 3 2 6 6 C 1.33384 * 125.20335 * 179.97438 * 2 1 3 7 7 C 1.50702 * 122.54036 * 0.02562 * 6 2 1 8 8 C 1.50700 * 109.46948 * 85.00599 * 7 6 2 9 9 O 1.21280 * 119.99976 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99737 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99640 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47445 * 325.00100 * 11 10 8 13 13 C 1.52999 * 109.46949 * 85.00138 * 11 10 8 14 14 C 1.53005 * 109.47253 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46838 * 299.99807 * 14 13 11 16 16 H 1.09000 * 109.47113 * 300.00173 * 15 14 13 17 17 N 1.46492 * 109.47242 * 179.97438 * 15 14 13 18 18 C 1.36944 * 120.00005 * 84.99913 * 17 15 14 19 19 H 1.07995 * 119.99515 * 0.02562 * 18 17 15 20 20 C 1.38809 * 119.99845 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00221 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47418 * 59.99309 * 22 20 18 24 24 H 1.48496 * 109.47262 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46715 * 299.99947 * 22 20 18 26 26 C 1.53003 * 109.46990 * 59.99707 * 15 14 13 27 27 C 1.52994 * 109.47087 * 205.00119 * 11 10 8 28 28 H 1.08996 * 109.47029 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46906 * 120.02416 * 1 2 3 30 30 H 1.09003 * 109.46340 * 240.01967 * 1 2 3 31 31 H 1.08002 * 125.19914 * 179.97438 * 4 3 2 32 32 H 1.08001 * 122.53761 * 179.75296 * 5 4 3 33 33 H 1.09005 * 109.47219 * 205.00274 * 7 6 2 34 34 H 1.08996 * 109.47383 * 325.00505 * 7 6 2 35 35 H 0.96992 * 120.00029 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47542 * 299.99572 * 13 11 10 37 37 H 1.08994 * 109.47410 * 60.00052 * 13 11 10 38 38 H 1.09000 * 109.47261 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.46986 * 59.99650 * 14 13 11 40 40 H 0.97005 * 120.00418 * 265.00446 * 17 15 14 41 41 H 0.97004 * 119.99757 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.47261 * 179.97438 * 26 15 14 43 43 H 1.09008 * 109.47009 * 60.00072 * 26 15 14 44 44 H 1.09008 * 109.47035 * 299.99991 * 27 11 10 45 45 H 1.08994 * 109.47485 * 59.99994 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5209 1.4372 0.0000 4 6 3.9751 0.4478 0.0008 5 6 3.6380 -0.8428 -0.0041 6 6 2.2760 -1.0899 0.0005 7 6 1.7052 -2.4846 0.0005 8 6 1.4010 -2.9029 -1.4149 9 8 1.6261 -2.1435 -2.3333 10 7 0.8799 -4.1214 -1.6603 11 6 0.5837 -4.5278 -3.0362 12 1 0.2442 -3.6626 -3.6056 13 6 1.8471 -5.0998 -3.6823 14 6 1.5380 -5.5236 -5.1196 15 6 0.4414 -6.5906 -5.1119 16 1 0.7806 -7.4561 -4.5428 17 7 0.1449 -6.9961 -6.4880 18 6 0.9001 -7.9642 -7.0944 19 1 1.7140 -8.4290 -6.5579 20 6 0.6195 -8.3480 -8.3985 21 7 -0.3728 -7.7818 -9.0521 22 14 1.6493 -9.6691 -9.2254 23 1 1.5496 -10.9319 -8.4504 24 1 1.1501 -9.8941 -10.6058 25 1 3.0672 -9.2310 -9.2776 26 6 -0.8221 -6.0187 -4.4658 27 6 -0.5127 -5.5949 -3.0280 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3632 -0.5136 0.8902 31 1 4.9863 0.8272 0.0007 32 1 4.3721 -1.6349 -0.0085 33 1 2.4295 -3.1736 0.4353 34 1 0.7883 -2.5020 0.5895 35 1 0.7003 -4.7289 -0.9258 36 1 2.6283 -4.3396 -3.6882 37 1 2.1866 -5.9650 -3.1130 38 1 2.4380 -5.9315 -5.5797 39 1 1.1988 -4.6581 -5.6886 40 1 -0.5864 -6.5788 -6.9698 41 1 -0.5686 -8.0498 -9.9636 42 1 -1.6035 -6.7786 -4.4607 43 1 -1.1613 -5.1531 -5.0349 44 1 -0.1732 -6.4603 -2.4586 45 1 -1.4128 -5.1875 -2.5678 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034748578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:42 Heat of formation + Delta-G solvation = -36.449096 kcal Electronic energy + Delta-G solvation = -24505.946053 eV Core-core repulsion = 21034.316690 eV Total energy + Delta-G solvation = -3471.629363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16926 -39.66238 -38.55840 -36.29757 -34.60546 -33.15260 -32.51702 -31.67486 -31.02090 -28.75693 -26.54760 -25.47278 -23.76084 -23.56179 -22.49014 -21.43660 -20.88577 -19.36064 -19.05358 -18.07260 -17.93588 -17.30577 -16.84039 -16.32374 -15.81681 -15.78319 -15.38186 -15.15288 -14.97057 -14.72396 -14.36506 -14.24562 -13.97644 -13.66183 -13.54603 -13.31496 -13.14582 -13.07347 -12.95063 -12.80352 -12.64785 -12.41111 -12.36062 -12.27184 -12.15514 -12.02606 -11.66000 -11.62452 -11.43797 -11.18771 -10.87809 -10.76804 -9.95197 -9.43272 -9.27516 -8.99251 -7.93170 -5.21390 0.11171 0.75472 1.08872 1.46347 1.49540 1.55459 1.69066 1.75987 2.41932 2.57171 3.39428 3.76494 3.83022 3.85894 3.91771 3.99226 4.11964 4.26862 4.31707 4.39012 4.42432 4.48719 4.54543 4.56487 4.61162 4.66710 4.69756 4.74116 4.77630 4.89156 5.02095 5.08043 5.14080 5.16282 5.19168 5.26640 5.29197 5.48503 5.49428 5.55879 5.60459 5.63503 5.65679 6.29568 6.70884 7.34751 7.41657 8.12849 8.34930 9.30382 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027312 B = 0.002170 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.932068 B =12897.676954 C =13230.631178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.175 4.175 3 S 0.077 5.923 4 C -0.225 4.225 5 C -0.132 4.132 6 C -0.108 4.108 7 C -0.073 4.073 8 C 0.511 3.489 9 O -0.581 6.581 10 N -0.711 5.711 11 C 0.154 3.846 12 H 0.059 0.941 13 C -0.111 4.111 14 C -0.123 4.123 15 C 0.173 3.827 16 H 0.049 0.951 17 N -0.740 5.740 18 C -0.237 4.237 19 H 0.075 0.925 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.281 1.281 26 C -0.114 4.114 27 C -0.104 4.104 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.180 0.820 32 H 0.150 0.850 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.418 0.582 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.089 0.911 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 13.725 28.173 31.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.292 4.292 3 S 0.342 5.658 4 C -0.360 4.360 5 C -0.162 4.162 6 C -0.120 4.120 7 C -0.115 4.115 8 C 0.298 3.702 9 O -0.460 6.460 10 N -0.364 5.364 11 C 0.049 3.951 12 H 0.077 0.923 13 C -0.150 4.150 14 C -0.164 4.164 15 C 0.065 3.935 16 H 0.067 0.933 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.093 0.907 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.800 3.200 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.207 1.207 26 C -0.153 4.153 27 C -0.142 4.142 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.197 0.803 32 H 0.168 0.832 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.256 0.744 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.978 15.705 27.512 31.819 hybrid contribution 0.733 -2.018 -1.325 2.523 sum 3.711 13.687 26.188 29.781 Atomic orbital electron populations 1.20383 0.86822 1.03482 1.03305 1.24584 1.00825 0.95286 1.08508 1.84163 0.97744 1.10196 1.73742 1.25736 1.02387 0.96665 1.11211 1.20265 0.95964 0.97142 1.02792 1.18477 0.93069 0.95223 1.05268 1.20408 1.04895 0.93344 0.92855 1.21142 0.76018 0.81084 0.91933 1.90734 1.53430 1.53767 1.48099 1.45934 1.64672 1.16721 1.09043 1.20759 0.94625 0.97002 0.82714 0.92304 1.21749 0.97582 1.00281 0.95393 1.22035 0.99605 0.98877 0.95913 1.20490 0.93698 0.94430 0.84887 0.93329 1.42687 1.37944 1.45256 1.12038 1.19591 1.09535 1.11985 0.95766 0.90707 1.25563 1.00434 1.03085 0.98080 1.69817 1.33300 1.47339 1.11805 0.85241 0.78108 0.79420 0.77198 1.20084 1.22303 1.20730 1.21657 0.97315 1.00292 0.96033 1.21650 0.98197 0.98306 0.96078 0.90943 0.91766 0.88184 0.80275 0.83218 0.85297 0.85235 0.74427 0.93736 0.90438 0.94328 0.94629 0.79776 0.94136 0.91446 0.93154 0.89245 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 9.53 71.24 0.68 -0.50 16 2 C -0.17 -3.29 6.50 24.59 0.16 -3.13 16 3 S 0.08 1.43 23.33 -56.49 -1.32 0.11 16 4 C -0.23 -3.98 11.23 66.72 0.75 -3.24 16 5 C -0.13 -2.42 9.96 21.22 0.21 -2.20 16 6 C -0.11 -1.99 4.29 -20.92 -0.09 -2.08 16 7 C -0.07 -0.94 5.62 29.10 0.16 -0.78 16 8 C 0.51 10.70 7.79 87.66 0.68 11.38 16 9 O -0.58 -18.77 15.70 -3.03 -0.05 -18.81 16 10 N -0.71 -12.10 5.08 -442.54 -2.25 -14.35 16 11 C 0.15 3.71 2.45 44.99 0.11 3.82 16 12 H 0.06 1.79 7.58 -2.39 -0.02 1.77 16 13 C -0.11 -3.17 5.49 30.60 0.17 -3.00 16 14 C -0.12 -4.61 5.50 30.60 0.17 -4.45 16 15 C 0.17 6.72 2.77 45.00 0.12 6.84 16 16 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 17 N -0.74 -37.87 5.12 -322.94 -1.65 -39.52 16 18 C -0.24 -13.31 9.93 84.03 0.83 -12.47 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 21 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 22 Si 0.97 46.79 29.55 68.60 2.03 48.81 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 C -0.11 -3.50 5.39 30.61 0.17 -3.34 16 27 C -0.10 -2.17 5.39 30.61 0.17 -2.01 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 0.91 7.96 -2.39 -0.02 0.89 16 31 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.13 0.97 8.11 -2.38 -0.02 0.95 16 34 H 0.13 0.91 7.52 -2.39 -0.02 0.89 16 35 H 0.42 3.72 8.60 -92.71 -0.80 2.92 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.37 20.50 7.80 -92.70 -0.72 19.78 16 41 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -75.75 379.84 1.27 -74.48 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.53 Total: 28.92 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 4.76 Total: -19.34 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -3.62 Total: -114.16 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.32 Total: 0.11 kcal Total: -75.75 1.27 -74.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034748578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.028 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds