Wall clock time and date at job start Tue Mar 31 2020 12:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33384 * 125.20502 * 2 1 4 4 C 1.38421 * 114.92224 * 179.97438 * 3 2 1 5 5 C 1.33389 * 114.92161 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.20289 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47298 * 90.00096 * 6 5 4 8 8 O 1.21284 * 119.99770 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.46492 * 119.99930 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47696 * 34.99761 * 10 9 7 12 12 C 1.53002 * 109.47204 * 155.00105 * 10 9 7 13 13 C 1.53000 * 109.47233 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 299.99657 * 13 12 10 15 15 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 16 16 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 17 17 C 1.36942 * 120.00130 * 154.99556 * 16 14 13 18 18 H 1.08000 * 119.99641 * 0.02562 * 17 16 14 19 19 C 1.38804 * 119.99697 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99761 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00474 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47162 * 89.99437 * 21 19 17 23 23 H 1.48493 * 109.46921 * 209.99695 * 21 19 17 24 24 H 1.48501 * 109.46561 * 329.99707 * 21 19 17 25 25 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 26 26 C 1.52997 * 109.47244 * 274.99857 * 10 9 7 27 27 S 1.75886 * 109.59329 * 0.24265 * 5 4 3 28 28 H 1.09003 * 109.46605 * 89.99928 * 1 2 3 29 29 H 1.09004 * 109.47092 * 209.99300 * 1 2 3 30 30 H 1.08997 * 109.47258 * 329.99960 * 1 2 3 31 31 H 1.08001 * 122.53858 * 359.95094 * 3 2 1 32 32 H 1.08003 * 122.54163 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47520 * 330.00175 * 6 5 4 34 34 H 1.09000 * 109.46981 * 210.00299 * 6 5 4 35 35 H 0.96998 * 119.99716 * 359.97438 * 9 7 6 36 36 H 1.08992 * 109.47063 * 59.99836 * 12 10 9 37 37 H 1.09004 * 109.46733 * 299.99549 * 12 10 9 38 38 H 1.09002 * 109.47398 * 59.99826 * 13 12 10 39 39 H 1.09001 * 109.47194 * 180.02562 * 13 12 10 40 40 H 0.97000 * 119.99491 * 335.00093 * 16 14 13 41 41 H 0.97006 * 120.00219 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47486 * 180.02562 * 25 14 13 43 43 H 1.09002 * 109.46716 * 60.00091 * 25 14 13 44 44 H 1.09002 * 109.47153 * 300.00242 * 26 10 9 45 45 H 1.09001 * 109.47289 * 60.00326 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 3.9751 -0.4478 0.0005 6 6 5.3860 -0.9771 0.0005 7 6 5.8564 -1.1537 1.4213 8 8 5.1186 -0.8765 2.3431 9 7 7.0972 -1.6187 1.6675 10 6 7.5546 -1.7898 3.0487 11 1 6.7180 -2.1056 3.6720 12 6 8.6541 -2.8529 3.0939 13 6 9.1313 -3.0320 4.5364 14 6 9.6837 -1.7046 5.0594 15 1 10.5204 -1.3886 4.4365 16 7 10.1412 -1.8762 6.4405 17 6 11.1042 -1.0470 6.9509 18 1 11.5260 -0.2662 6.3353 19 6 11.5372 -1.2093 8.2596 20 7 12.4624 -0.4120 8.7503 21 14 10.8071 -2.5593 9.3245 22 1 11.6073 -3.8004 9.1682 23 1 10.8273 -2.1331 10.7469 24 1 9.4062 -2.8174 8.9049 25 6 8.5843 -0.6414 5.0143 26 6 8.1071 -0.4622 3.5711 27 16 2.5209 -1.4372 -0.0074 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3633 0.8899 0.5138 31 1 1.8669 2.0894 -0.0008 32 1 4.3721 1.6349 0.0002 33 1 6.0389 -0.2715 -0.5133 34 1 5.4136 -1.9380 -0.5135 35 1 7.6874 -1.8400 0.9302 36 1 9.4906 -2.5371 2.4706 37 1 8.2603 -3.7987 2.7217 38 1 8.2945 -3.3481 5.1594 39 1 9.9149 -3.7890 4.5686 40 1 9.7621 -2.5772 6.9934 41 1 12.7654 -0.5256 9.6648 42 1 8.9780 0.3044 5.3864 43 1 7.7476 -0.9575 5.6372 44 1 8.9437 -0.1464 2.9478 45 1 7.3239 0.2952 3.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034796521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:47 Heat of formation + Delta-G solvation = -12.203901 kcal Electronic energy + Delta-G solvation = -24163.436910 eV Core-core repulsion = 20692.858898 eV Total energy + Delta-G solvation = -3470.578012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14056 -38.43394 -37.76495 -34.97673 -33.42817 -32.96185 -31.09004 -30.48357 -30.07311 -27.69640 -25.35584 -23.44305 -22.95615 -22.45356 -21.11568 -20.52808 -19.68699 -19.03203 -17.65256 -17.25613 -17.04505 -16.22822 -15.44115 -15.26998 -14.97710 -14.46522 -14.24412 -13.93803 -13.75562 -13.66687 -13.52494 -13.06983 -13.02098 -12.90018 -12.61597 -12.22043 -12.16894 -12.08484 -11.95367 -11.72767 -11.68472 -11.13749 -10.94220 -10.88518 -10.87127 -10.65894 -10.25303 -10.17270 -9.89116 -9.81504 -9.55697 -9.01266 -8.86851 -8.67566 -8.62475 -7.24126 -5.75032 -3.10202 0.73987 1.37857 1.76763 2.49568 2.53569 3.14261 3.39412 3.42692 3.47153 4.31890 4.58766 4.61151 4.67132 4.78124 4.88080 4.94305 4.97264 5.07715 5.12397 5.16816 5.30089 5.42242 5.47406 5.53030 5.56013 5.58932 5.62527 5.77728 5.79749 5.93239 5.93585 6.04513 6.11389 6.18286 6.20509 6.30475 6.36262 6.46649 6.55384 6.64747 6.90577 7.06115 7.40565 8.01767 8.14179 8.44327 9.23173 9.95983 10.16010 11.43370 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.002154 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.797035 B =12994.217447 C =13185.729118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.181 4.181 3 C -0.138 4.138 4 C -0.122 4.122 5 C -0.160 4.160 6 C -0.071 4.071 7 C 0.510 3.490 8 O -0.525 6.525 9 N -0.727 5.727 10 C 0.145 3.855 11 H 0.086 0.914 12 C -0.118 4.118 13 C -0.124 4.124 14 C 0.182 3.818 15 H 0.055 0.945 16 N -0.750 5.750 17 C -0.241 4.241 18 H 0.090 0.910 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.132 4.132 26 C -0.123 4.123 27 S 0.105 5.895 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.024 -2.509 -24.560 31.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.299 4.299 3 C -0.168 4.168 4 C -0.153 4.153 5 C -0.278 4.278 6 C -0.113 4.113 7 C 0.295 3.705 8 O -0.400 6.400 9 N -0.378 5.378 10 C 0.041 3.959 11 H 0.104 0.896 12 C -0.157 4.157 13 C -0.163 4.163 14 C 0.072 3.928 15 H 0.073 0.927 16 N -0.392 5.392 17 C -0.371 4.371 18 H 0.108 0.892 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.173 4.173 26 C -0.163 4.163 27 S 0.369 5.631 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.661 -3.692 -23.840 31.763 hybrid contribution 0.196 0.618 0.626 0.901 sum -20.466 -3.074 -23.215 31.100 Atomic orbital electron populations 1.20330 0.87911 1.03229 1.02580 1.24459 0.99894 0.95734 1.09771 1.20016 0.92834 0.99197 1.04801 1.20012 0.96333 0.95759 1.03160 1.23686 0.97114 0.96576 1.10405 1.20167 0.91966 1.03591 0.95556 1.20449 0.81759 0.77305 0.90979 1.90755 1.54508 1.48771 1.45977 1.46141 1.15058 1.67230 1.09347 1.21105 0.97135 0.96050 0.81584 0.89569 1.21730 0.97637 0.97815 0.98476 1.21793 1.00764 0.99396 0.94357 1.20216 0.94153 0.91686 0.86707 0.92692 1.42801 1.47292 1.39237 1.09828 1.19077 1.11716 1.10021 0.96260 0.89241 1.24678 0.98779 0.98853 0.96999 1.69704 1.32689 1.40104 1.15798 0.86547 0.78972 0.82539 0.80475 1.21143 1.21814 1.20295 1.22196 0.99601 1.01759 0.93773 1.21895 1.00123 0.96339 0.97902 1.84130 0.96371 1.09427 1.73154 0.90833 0.91340 0.90521 0.84459 0.84500 0.87016 0.87961 0.76851 0.91337 0.91834 0.92117 0.91259 0.80707 0.93119 0.91342 0.92645 0.92127 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.38 36.01 0.37 -0.15 16 2 C -0.18 -1.68 6.51 -36.00 -0.23 -1.92 16 3 C -0.14 -1.31 10.05 -41.21 -0.41 -1.72 16 4 C -0.12 -1.23 10.05 -41.21 -0.41 -1.64 16 5 C -0.16 -1.61 5.00 -36.00 -0.18 -1.79 16 6 C -0.07 -0.56 6.19 -29.03 -0.18 -0.74 16 7 C 0.51 5.85 7.79 -10.98 -0.09 5.76 16 8 O -0.52 -8.50 15.70 5.55 0.09 -8.41 16 9 N -0.73 -7.13 5.08 -53.81 -0.27 -7.41 16 10 C 0.14 1.81 2.45 -67.94 -0.17 1.65 16 11 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 12 C -0.12 -1.34 5.39 -26.73 -0.14 -1.49 16 13 C -0.12 -1.84 5.39 -26.73 -0.14 -1.99 16 14 C 0.18 3.39 2.77 -67.93 -0.19 3.21 16 15 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.75 -17.65 4.93 -53.43 -0.26 -17.91 16 17 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 20 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 21 Si 0.88 22.32 27.74 -169.99 -4.71 17.61 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 25 C -0.13 -2.35 5.51 -26.70 -0.15 -2.50 16 26 C -0.12 -1.78 5.50 -26.70 -0.15 -1.92 16 27 S 0.10 1.03 23.31 -107.50 -2.51 -1.47 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.40 2.58 8.60 -40.82 -0.35 2.23 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.36 8.39 5.66 -40.82 -0.23 8.16 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -34.74 378.59 -10.84 -45.58 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.33 Total: 7.27 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -2.32 Total: -12.21 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.24 Total: -54.06 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.74 -10.84 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034796521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.377 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds