Wall clock time and date at job start Tue Mar 31 2020 12:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33384 * 125.20502 * 2 1 4 4 C 1.38421 * 114.92224 * 179.97438 * 3 2 1 5 5 C 1.33389 * 114.92161 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.20289 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47298 * 90.00096 * 6 5 4 8 8 O 1.21284 * 119.99770 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.46492 * 119.99930 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47696 * 34.99761 * 10 9 7 12 12 C 1.53002 * 109.47204 * 155.00105 * 10 9 7 13 13 C 1.53000 * 109.47233 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 299.99657 * 13 12 10 15 15 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 16 16 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 17 17 C 1.36942 * 120.00130 * 154.99556 * 16 14 13 18 18 H 1.08000 * 119.99641 * 0.02562 * 17 16 14 19 19 C 1.38804 * 119.99697 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99761 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00474 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47162 * 89.99437 * 21 19 17 23 23 H 1.48493 * 109.46921 * 209.99695 * 21 19 17 24 24 H 1.48501 * 109.46561 * 329.99707 * 21 19 17 25 25 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 26 26 C 1.52997 * 109.47244 * 274.99857 * 10 9 7 27 27 S 1.75886 * 109.59329 * 0.24265 * 5 4 3 28 28 H 1.09003 * 109.46605 * 89.99928 * 1 2 3 29 29 H 1.09004 * 109.47092 * 209.99300 * 1 2 3 30 30 H 1.08997 * 109.47258 * 329.99960 * 1 2 3 31 31 H 1.08001 * 122.53858 * 359.95094 * 3 2 1 32 32 H 1.08003 * 122.54163 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47520 * 330.00175 * 6 5 4 34 34 H 1.09000 * 109.46981 * 210.00299 * 6 5 4 35 35 H 0.96998 * 119.99716 * 359.97438 * 9 7 6 36 36 H 1.08992 * 109.47063 * 59.99836 * 12 10 9 37 37 H 1.09004 * 109.46733 * 299.99549 * 12 10 9 38 38 H 1.09002 * 109.47398 * 59.99826 * 13 12 10 39 39 H 1.09001 * 109.47194 * 180.02562 * 13 12 10 40 40 H 0.97000 * 119.99491 * 335.00093 * 16 14 13 41 41 H 0.97006 * 120.00219 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47486 * 180.02562 * 25 14 13 43 43 H 1.09002 * 109.46716 * 60.00091 * 25 14 13 44 44 H 1.09002 * 109.47153 * 300.00242 * 26 10 9 45 45 H 1.09001 * 109.47289 * 60.00326 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 3.9751 -0.4478 0.0005 6 6 5.3860 -0.9771 0.0005 7 6 5.8564 -1.1537 1.4213 8 8 5.1186 -0.8765 2.3431 9 7 7.0972 -1.6187 1.6675 10 6 7.5546 -1.7898 3.0487 11 1 6.7180 -2.1056 3.6720 12 6 8.6541 -2.8529 3.0939 13 6 9.1313 -3.0320 4.5364 14 6 9.6837 -1.7046 5.0594 15 1 10.5204 -1.3886 4.4365 16 7 10.1412 -1.8762 6.4405 17 6 11.1042 -1.0470 6.9509 18 1 11.5260 -0.2662 6.3353 19 6 11.5372 -1.2093 8.2596 20 7 12.4624 -0.4120 8.7503 21 14 10.8071 -2.5593 9.3245 22 1 11.6073 -3.8004 9.1682 23 1 10.8273 -2.1331 10.7469 24 1 9.4062 -2.8174 8.9049 25 6 8.5843 -0.6414 5.0143 26 6 8.1071 -0.4622 3.5711 27 16 2.5209 -1.4372 -0.0074 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3633 0.8899 0.5138 31 1 1.8669 2.0894 -0.0008 32 1 4.3721 1.6349 0.0002 33 1 6.0389 -0.2715 -0.5133 34 1 5.4136 -1.9380 -0.5135 35 1 7.6874 -1.8400 0.9302 36 1 9.4906 -2.5371 2.4706 37 1 8.2603 -3.7987 2.7217 38 1 8.2945 -3.3481 5.1594 39 1 9.9149 -3.7890 4.5686 40 1 9.7621 -2.5772 6.9934 41 1 12.7654 -0.5256 9.6648 42 1 8.9780 0.3044 5.3864 43 1 7.7476 -0.9575 5.6372 44 1 8.9437 -0.1464 2.9478 45 1 7.3239 0.2952 3.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034796521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:46 Heat of formation + Delta-G solvation = -34.680605 kcal Electronic energy + Delta-G solvation = -24164.411573 eV Core-core repulsion = 20692.858898 eV Total energy + Delta-G solvation = -3471.552675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10101 -39.49667 -38.65426 -36.45392 -34.65717 -33.99635 -32.86082 -31.70042 -30.89341 -29.05705 -26.16730 -25.08985 -23.84507 -23.61668 -22.44989 -21.48482 -21.07852 -19.79049 -19.51494 -18.10212 -17.89866 -17.19902 -16.77146 -16.24911 -16.19028 -15.93565 -15.24964 -15.04325 -14.93194 -14.70576 -14.59530 -14.35656 -14.13205 -13.85788 -13.70596 -13.49461 -13.36266 -13.10966 -12.91576 -12.82753 -12.68319 -12.40567 -12.32934 -12.25247 -12.05899 -11.99002 -11.79856 -11.64219 -11.47173 -11.21368 -10.94308 -10.84371 -10.00067 -9.37156 -9.34105 -9.29801 -8.01896 -5.34609 0.03854 0.70099 1.06985 1.37362 1.40576 1.47761 1.67776 1.77915 2.31287 2.48579 3.28815 3.57215 3.64635 3.76023 3.86238 3.99746 4.04384 4.23925 4.27395 4.33293 4.35972 4.40319 4.52741 4.55942 4.58266 4.62985 4.70927 4.73017 4.80455 4.87015 4.94335 5.08612 5.12396 5.14438 5.23301 5.26138 5.26835 5.36188 5.48379 5.54131 5.60969 5.63644 5.78795 6.22915 6.63604 7.09019 7.33833 7.86464 8.04840 9.19711 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.002154 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.797035 B =12994.217447 C =13185.729118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.187 4.187 3 C -0.154 4.154 4 C -0.137 4.137 5 C -0.173 4.173 6 C -0.064 4.064 7 C 0.509 3.491 8 O -0.578 6.578 9 N -0.710 5.710 10 C 0.153 3.847 11 H 0.063 0.937 12 C -0.106 4.106 13 C -0.117 4.117 14 C 0.175 3.825 15 H 0.048 0.952 16 N -0.754 5.754 17 C -0.225 4.225 18 H 0.056 0.944 19 C -0.069 4.069 20 N -0.985 5.985 21 Si 0.955 3.045 22 H -0.275 1.275 23 H -0.299 1.299 24 H -0.255 1.255 25 C -0.125 4.125 26 C -0.112 4.112 27 S 0.083 5.917 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.419 0.581 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.219 -4.376 -26.840 34.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.304 4.304 3 C -0.184 4.184 4 C -0.167 4.167 5 C -0.291 4.291 6 C -0.105 4.105 7 C 0.295 3.705 8 O -0.457 6.457 9 N -0.363 5.363 10 C 0.048 3.952 11 H 0.082 0.918 12 C -0.144 4.144 13 C -0.156 4.156 14 C 0.067 3.933 15 H 0.067 0.933 16 N -0.396 5.396 17 C -0.357 4.357 18 H 0.074 0.926 19 C -0.260 4.260 20 N -0.636 5.636 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.226 1.226 24 H -0.180 1.180 25 C -0.166 4.166 26 C -0.151 4.151 27 S 0.348 5.652 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.256 0.744 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.197 0.803 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.869 -5.587 -26.210 34.589 hybrid contribution 0.553 1.311 1.262 1.901 sum -21.316 -4.276 -24.948 33.092 Atomic orbital electron populations 1.20432 0.86167 1.03788 1.03730 1.24851 1.01200 0.95243 1.09154 1.20294 0.92936 1.00094 1.05055 1.20293 0.96935 0.96246 1.03214 1.23997 0.97995 0.96612 1.10479 1.20261 0.91122 1.05823 0.93340 1.21076 0.81460 0.76020 0.91909 1.90742 1.56003 1.51089 1.47870 1.45913 1.15042 1.66463 1.08835 1.20818 0.96698 0.94941 0.82773 0.91832 1.21653 0.97707 0.98730 0.96329 1.21704 1.00769 0.96646 0.96498 1.20484 0.94126 0.94407 0.84269 0.93343 1.42860 1.46454 1.38486 1.11836 1.19036 1.11618 1.09154 0.95843 0.92576 1.25514 0.99836 1.01914 0.98695 1.69888 1.34941 1.42636 1.16143 0.85401 0.79242 0.79373 0.77709 1.20084 1.22572 1.18012 1.22025 0.98779 0.99727 0.96056 1.21763 1.00098 0.97533 0.95751 1.84121 0.97220 1.10381 1.73515 0.89325 0.91137 0.89563 0.82974 0.83608 0.84045 0.85200 0.74356 0.89403 0.88965 0.92178 0.90597 0.80303 0.93468 0.94618 0.93676 0.90750 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.38 71.24 0.74 -0.22 16 2 C -0.19 -3.31 6.51 24.59 0.16 -3.15 16 3 C -0.15 -2.78 10.05 21.21 0.21 -2.56 16 4 C -0.14 -2.59 10.05 21.22 0.21 -2.38 16 5 C -0.17 -3.23 5.00 24.59 0.12 -3.11 16 6 C -0.06 -0.83 6.19 29.10 0.18 -0.65 16 7 C 0.51 10.56 7.79 87.66 0.68 11.25 16 8 O -0.58 -18.38 15.70 -3.04 -0.05 -18.43 16 9 N -0.71 -11.71 5.08 -442.54 -2.25 -13.96 16 10 C 0.15 3.47 2.45 44.99 0.11 3.58 16 11 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 12 C -0.11 -2.01 5.39 30.60 0.16 -1.85 16 13 C -0.12 -3.18 5.39 30.59 0.16 -3.01 16 14 C 0.17 6.41 2.77 44.99 0.12 6.53 16 15 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 16 N -0.75 -35.28 4.93 -322.95 -1.59 -36.87 16 17 C -0.23 -12.96 10.41 84.03 0.87 -12.09 16 18 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 20 N -0.99 -64.05 13.97 21.65 0.30 -63.75 16 21 Si 0.96 46.34 27.74 68.60 1.90 48.24 16 22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 24 H -0.26 -11.32 6.52 99.48 0.65 -10.68 16 25 C -0.13 -4.49 5.51 30.61 0.17 -4.32 16 26 C -0.11 -3.13 5.50 30.61 0.17 -2.96 16 27 S 0.08 1.57 23.31 -56.49 -1.32 0.25 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.42 3.55 8.60 -92.71 -0.80 2.75 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.36 16.42 5.66 -92.71 -0.52 15.90 16 41 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 42 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -78.85 378.59 1.17 -77.68 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.39 Total: 25.40 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.55 Total: -18.56 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -3.54 Total: -114.58 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.05 Total: -18.43 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.90 Total: 48.24 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.32 Total: 0.25 kcal Total: -78.85 1.17 -77.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034796521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.001 kcal (2) G-P(sol) polarization free energy of solvation -78.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds