Wall clock time and date at job start Tue Mar 31 2020 13:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.46959 * 2 1 4 4 C 1.37464 * 123.34914 * 264.97767 * 3 2 1 5 5 C 1.33815 * 115.09987 * 180.02562 * 4 3 2 6 6 S 1.70621 * 110.95518 * 359.72209 * 5 4 3 7 7 C 1.36646 * 123.35134 * 84.99569 * 3 2 1 8 8 C 1.46582 * 125.45761 * 359.97438 * 7 3 2 9 9 O 1.21700 * 120.00330 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99740 * 179.97438 * 8 7 3 11 11 C 1.46505 * 119.99797 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47276 * 325.00066 * 11 10 8 13 13 C 1.53002 * 109.46958 * 84.99979 * 11 10 8 14 14 C 1.52997 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 11 16 16 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 17 17 N 1.46500 * 109.47249 * 180.02562 * 15 14 13 18 18 C 1.36932 * 120.00140 * 84.99833 * 17 15 14 19 19 H 1.08004 * 120.00449 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47053 * 60.00202 * 22 20 18 24 24 H 1.48499 * 109.47049 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47098 * 299.99805 * 22 20 18 26 26 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 27 27 C 1.52996 * 109.46998 * 204.99519 * 11 10 8 28 28 H 1.09007 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47321 * 299.99818 * 1 2 3 30 30 H 1.09000 * 109.47260 * 60.00328 * 1 2 3 31 31 H 1.08998 * 109.47583 * 239.99725 * 2 1 3 32 32 H 1.09000 * 109.47260 * 119.99672 * 2 1 3 33 33 H 1.08005 * 122.45457 * 359.97438 * 4 3 2 34 34 H 1.08008 * 124.52098 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00457 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47097 * 299.99818 * 13 11 10 37 37 H 1.09001 * 109.47142 * 59.99782 * 13 11 10 38 38 H 1.09001 * 109.47375 * 59.99908 * 14 13 11 39 39 H 1.09000 * 109.47140 * 179.97438 * 14 13 11 40 40 H 0.97005 * 119.99374 * 264.99912 * 17 15 14 41 41 H 0.96998 * 120.00493 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.47153 * 180.02562 * 26 15 14 43 43 H 1.09001 * 109.46832 * 60.00321 * 26 15 14 44 44 H 1.09004 * 109.47368 * 60.00227 * 27 11 10 45 45 H 1.09001 * 109.47372 * 300.00383 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3789 2.0999 -1.1439 5 6 2.8050 3.3539 -0.9526 6 16 2.7860 3.7587 0.7048 7 6 2.1888 2.1624 1.1371 8 6 1.8993 1.7027 2.4985 9 8 1.4822 0.5746 2.6842 10 7 2.0950 2.5295 3.5448 11 6 1.8051 2.0703 4.9055 12 1 0.9426 1.4042 4.8881 13 6 3.0179 1.3200 5.4597 14 6 2.7149 0.8398 6.8804 15 6 2.4099 2.0453 7.7720 16 1 3.2724 2.7115 7.7898 17 7 2.1204 1.5857 9.1325 18 6 3.1456 1.3607 10.0119 19 1 4.1678 1.5217 9.7025 20 6 2.8713 0.9246 11.3009 21 7 1.6258 0.7279 11.6780 22 14 4.2699 0.6170 12.5004 23 1 5.0346 1.8740 12.7020 24 1 3.7158 0.1614 13.8006 25 1 5.1712 -0.4282 11.9523 26 6 1.1972 2.7957 7.2177 27 6 1.5006 3.2761 5.7966 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3131 1.6536 -2.1252 34 1 3.1154 4.0221 -1.7424 35 1 2.4278 3.4286 3.3969 36 1 3.2349 0.4609 4.8248 37 1 3.8805 1.9861 5.4770 38 1 1.8525 0.1736 6.8627 39 1 3.5787 0.3049 7.2751 40 1 1.2024 1.4407 9.4104 41 1 1.4340 0.4236 12.5788 42 1 0.9802 3.6547 7.8526 43 1 0.3347 2.1294 7.2000 44 1 0.6366 3.8107 5.4018 45 1 2.3632 3.9422 5.8139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034797415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:09 Heat of formation + Delta-G solvation = -16.959505 kcal Electronic energy + Delta-G solvation = -24677.106459 eV Core-core repulsion = 21206.322228 eV Total energy + Delta-G solvation = -3470.784231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22776 -38.70910 -37.55692 -34.86219 -33.13099 -32.89076 -30.88079 -30.39210 -29.53449 -27.30741 -25.48310 -23.62230 -22.63334 -22.39219 -21.79300 -20.70612 -19.73538 -18.83429 -18.35549 -17.01461 -16.30725 -15.98722 -15.49232 -15.13668 -14.93750 -14.28892 -14.16604 -13.91383 -13.75732 -13.69879 -13.53875 -13.24779 -12.93484 -12.69689 -12.48249 -12.14602 -12.01652 -11.79454 -11.73541 -11.43350 -11.24676 -11.03678 -10.94329 -10.79141 -10.74128 -10.64311 -10.19701 -10.09200 -9.90162 -9.74898 -9.56399 -9.20408 -8.91601 -8.82136 -8.77693 -6.91744 -5.73093 -3.01494 0.22933 1.17071 1.55689 2.09906 3.04039 3.08779 3.45996 3.50416 3.51352 4.50054 4.58969 4.62827 4.85868 4.88165 4.97165 5.05798 5.14162 5.28599 5.28970 5.44210 5.53602 5.54652 5.62324 5.69491 5.72266 5.74419 5.85436 5.86483 5.89568 5.99876 6.04730 6.16324 6.23441 6.25804 6.30398 6.33574 6.49941 6.58504 6.66513 6.74896 7.01312 7.17629 7.39587 7.72758 8.10369 8.45836 9.56627 10.15444 10.50008 11.49656 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.002396 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.120172 B =11683.874130 C =12034.724296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 C -0.020 4.020 4 C -0.146 4.146 5 C -0.229 4.229 6 S 0.191 5.809 7 C -0.267 4.267 8 C 0.588 3.412 9 O -0.520 6.520 10 N -0.722 5.722 11 C 0.147 3.853 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.120 4.120 27 C -0.120 4.120 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.394 0.606 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 7.061 -28.319 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C -0.035 4.035 4 C -0.177 4.177 5 C -0.367 4.367 6 S 0.459 5.541 7 C -0.387 4.387 8 C 0.374 3.626 9 O -0.398 6.398 10 N -0.372 5.372 11 C 0.044 3.956 12 H 0.108 0.892 13 C -0.163 4.163 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.159 4.159 27 C -0.158 4.158 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.162 0.838 34 H 0.186 0.814 35 H 0.227 0.773 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.471 7.590 -27.216 28.259 hybrid contribution 0.412 -0.960 -0.353 1.103 sum 0.883 6.630 -27.569 28.369 Atomic orbital electron populations 1.21600 0.94214 1.01893 1.01703 1.20431 0.96584 0.90493 1.03695 1.19553 0.95951 0.97546 0.90418 1.19936 1.03798 0.94253 0.99736 1.25235 1.08261 1.01385 1.01793 1.82995 1.60582 1.11505 0.98998 1.24522 1.16948 0.99482 0.97769 1.16906 0.77836 0.85164 0.82653 1.90812 1.45440 1.18608 1.84962 1.46068 1.67693 1.16491 1.06965 1.21149 0.99135 0.96543 0.78785 0.89173 1.21904 0.96942 0.99682 0.97777 1.22223 1.01916 1.00433 0.92694 1.20237 0.94809 0.92646 0.85581 0.93624 1.42420 1.06887 1.79988 1.07260 1.19195 0.88239 1.37277 0.92109 0.91300 1.24734 0.96206 1.02505 0.97600 1.69645 1.16861 1.52879 1.18850 0.86290 0.81409 0.77954 0.80676 1.21332 1.21735 1.21313 1.21758 0.99711 1.00680 0.93724 1.21771 1.01538 0.96593 0.95916 0.92246 0.92147 0.93339 0.91370 0.88560 0.83848 0.81442 0.77276 0.92288 0.92317 0.92456 0.91792 0.78307 0.93507 0.91325 0.91916 0.91833 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.78 37.16 0.36 -0.96 16 2 C -0.07 -0.73 5.50 -27.88 -0.15 -0.89 16 3 C -0.02 -0.20 5.16 -105.48 -0.54 -0.74 16 4 C -0.15 -1.16 9.96 -41.42 -0.41 -1.57 16 5 C -0.23 -1.58 10.92 29.18 0.32 -1.26 16 6 S 0.19 1.46 22.16 -107.50 -2.38 -0.92 16 7 C -0.27 -2.89 6.45 -36.79 -0.24 -3.13 16 8 C 0.59 7.69 7.74 -12.90 -0.10 7.59 16 9 O -0.52 -8.33 13.38 5.19 0.07 -8.26 16 10 N -0.72 -8.37 5.07 -55.14 -0.28 -8.65 16 11 C 0.15 1.97 2.45 -67.93 -0.17 1.81 16 12 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 13 C -0.12 -1.86 5.49 -26.73 -0.15 -2.01 16 14 C -0.13 -2.41 5.50 -26.73 -0.15 -2.55 16 15 C 0.18 3.46 2.77 -67.93 -0.19 3.27 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 N -0.73 -18.16 5.12 -53.42 -0.27 -18.44 16 18 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C -0.12 -1.91 5.39 -26.71 -0.14 -2.06 16 27 C -0.12 -1.49 5.39 -26.71 -0.14 -1.64 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.71 7.60 -51.93 -0.39 0.31 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 32 H 0.10 1.19 6.33 -51.93 -0.33 0.86 16 33 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.39 3.62 7.72 -40.82 -0.31 3.30 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.38 10.23 7.80 -40.82 -0.32 9.91 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -31.84 374.50 -10.68 -42.52 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.21 Total: 9.65 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.95 Total: -11.40 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.17 Total: -54.77 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.07 Total: -8.26 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.38 Total: -0.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.84 -10.68 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034797415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.563 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds