Wall clock time and date at job start Tue Mar 31 2020 13:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.46959 * 2 1 4 4 C 1.37464 * 123.34914 * 264.97767 * 3 2 1 5 5 C 1.33815 * 115.09987 * 180.02562 * 4 3 2 6 6 S 1.70621 * 110.95518 * 359.72209 * 5 4 3 7 7 C 1.36646 * 123.35134 * 84.99569 * 3 2 1 8 8 C 1.46582 * 125.45761 * 359.97438 * 7 3 2 9 9 O 1.21700 * 120.00330 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99740 * 179.97438 * 8 7 3 11 11 C 1.46505 * 119.99797 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47276 * 325.00066 * 11 10 8 13 13 C 1.53002 * 109.46958 * 84.99979 * 11 10 8 14 14 C 1.52997 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 11 16 16 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 17 17 N 1.46500 * 109.47249 * 180.02562 * 15 14 13 18 18 C 1.36932 * 120.00140 * 84.99833 * 17 15 14 19 19 H 1.08004 * 120.00449 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47053 * 60.00202 * 22 20 18 24 24 H 1.48499 * 109.47049 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47098 * 299.99805 * 22 20 18 26 26 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 27 27 C 1.52996 * 109.46998 * 204.99519 * 11 10 8 28 28 H 1.09007 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47321 * 299.99818 * 1 2 3 30 30 H 1.09000 * 109.47260 * 60.00328 * 1 2 3 31 31 H 1.08998 * 109.47583 * 239.99725 * 2 1 3 32 32 H 1.09000 * 109.47260 * 119.99672 * 2 1 3 33 33 H 1.08005 * 122.45457 * 359.97438 * 4 3 2 34 34 H 1.08008 * 124.52098 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00457 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47097 * 299.99818 * 13 11 10 37 37 H 1.09001 * 109.47142 * 59.99782 * 13 11 10 38 38 H 1.09001 * 109.47375 * 59.99908 * 14 13 11 39 39 H 1.09000 * 109.47140 * 179.97438 * 14 13 11 40 40 H 0.97005 * 119.99374 * 264.99912 * 17 15 14 41 41 H 0.96998 * 120.00493 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.47153 * 180.02562 * 26 15 14 43 43 H 1.09001 * 109.46832 * 60.00321 * 26 15 14 44 44 H 1.09004 * 109.47368 * 60.00227 * 27 11 10 45 45 H 1.09001 * 109.47372 * 300.00383 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3789 2.0999 -1.1439 5 6 2.8050 3.3539 -0.9526 6 16 2.7860 3.7587 0.7048 7 6 2.1888 2.1624 1.1371 8 6 1.8993 1.7027 2.4985 9 8 1.4822 0.5746 2.6842 10 7 2.0950 2.5295 3.5448 11 6 1.8051 2.0703 4.9055 12 1 0.9426 1.4042 4.8881 13 6 3.0179 1.3200 5.4597 14 6 2.7149 0.8398 6.8804 15 6 2.4099 2.0453 7.7720 16 1 3.2724 2.7115 7.7898 17 7 2.1204 1.5857 9.1325 18 6 3.1456 1.3607 10.0119 19 1 4.1678 1.5217 9.7025 20 6 2.8713 0.9246 11.3009 21 7 1.6258 0.7279 11.6780 22 14 4.2699 0.6170 12.5004 23 1 5.0346 1.8740 12.7020 24 1 3.7158 0.1614 13.8006 25 1 5.1712 -0.4282 11.9523 26 6 1.1972 2.7957 7.2177 27 6 1.5006 3.2761 5.7966 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3131 1.6536 -2.1252 34 1 3.1154 4.0221 -1.7424 35 1 2.4278 3.4286 3.3969 36 1 3.2349 0.4609 4.8248 37 1 3.8805 1.9861 5.4770 38 1 1.8525 0.1736 6.8627 39 1 3.5787 0.3049 7.2751 40 1 1.2024 1.4407 9.4104 41 1 1.4340 0.4236 12.5788 42 1 0.9802 3.6547 7.8526 43 1 0.3347 2.1294 7.2000 44 1 0.6366 3.8107 5.4018 45 1 2.3632 3.9422 5.8139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034797415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:09 Heat of formation + Delta-G solvation = -36.365393 kcal Electronic energy + Delta-G solvation = -24677.947961 eV Core-core repulsion = 21206.322228 eV Total energy + Delta-G solvation = -3471.625733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22020 -39.71533 -38.62410 -36.35772 -34.70129 -33.65364 -32.58193 -31.70584 -30.54683 -28.72214 -26.36903 -25.43701 -23.70555 -23.33893 -22.94003 -21.86148 -21.09420 -19.84624 -19.12891 -18.95115 -17.30405 -16.89195 -16.83445 -16.29704 -16.02233 -15.65580 -15.37999 -15.08661 -15.01835 -14.86220 -14.66282 -14.45427 -14.00991 -13.87151 -13.46342 -13.31080 -13.12398 -13.09637 -12.84633 -12.79649 -12.48681 -12.36514 -12.32173 -12.17907 -12.05930 -11.99579 -11.66834 -11.64435 -11.46480 -11.21158 -10.91843 -10.80638 -10.16590 -9.71830 -9.37348 -8.98996 -7.92697 -5.20845 -0.46035 0.53617 0.95495 1.42874 1.46732 1.49819 1.55713 2.07948 2.17666 2.57191 3.39821 3.68433 3.78554 3.87689 3.90227 3.91439 4.17723 4.28009 4.32822 4.35896 4.38985 4.47321 4.51315 4.53716 4.58223 4.64588 4.76021 4.84050 4.89372 4.98597 5.08966 5.09191 5.10990 5.12259 5.23879 5.26870 5.30700 5.39575 5.46928 5.52541 5.53325 5.55975 5.63391 6.29895 6.48070 7.16633 7.35322 8.13028 8.35567 9.30839 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.002396 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.120172 B =11683.874130 C =12034.724296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.025 4.025 4 C -0.159 4.159 5 C -0.215 4.215 6 S 0.230 5.770 7 C -0.307 4.307 8 C 0.584 3.416 9 O -0.561 6.561 10 N -0.711 5.711 11 C 0.155 3.845 12 H 0.068 0.932 13 C -0.112 4.112 14 C -0.122 4.122 15 C 0.173 3.827 16 H 0.048 0.952 17 N -0.739 5.739 18 C -0.237 4.237 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.971 3.029 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.281 1.281 26 C -0.112 4.112 27 C -0.107 4.107 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.165 0.835 34 H 0.200 0.800 35 H 0.408 0.592 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 9.336 -31.036 32.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.113 4.113 3 C -0.041 4.041 4 C -0.189 4.189 5 C -0.353 4.353 6 S 0.499 5.501 7 C -0.427 4.427 8 C 0.372 3.628 9 O -0.441 6.441 10 N -0.362 5.362 11 C 0.051 3.949 12 H 0.086 0.914 13 C -0.151 4.151 14 C -0.163 4.163 15 C 0.065 3.935 16 H 0.066 0.934 17 N -0.378 5.378 18 C -0.369 4.369 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.800 3.200 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.207 1.207 26 C -0.151 4.151 27 C -0.145 4.145 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.183 0.817 34 H 0.217 0.783 35 H 0.245 0.755 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.835 9.915 -29.986 31.636 hybrid contribution 0.019 -1.640 0.362 1.680 sum 1.855 8.275 -29.624 30.814 Atomic orbital electron populations 1.21545 0.94180 1.02005 1.01146 1.20397 0.96646 0.91058 1.03210 1.19767 0.95627 0.97445 0.91248 1.20091 1.04314 0.94678 0.99852 1.25700 1.06026 1.01314 1.02210 1.82805 1.59268 1.08680 0.99324 1.24416 1.19615 1.02036 0.96622 1.17301 0.77011 0.84682 0.83789 1.90793 1.47243 1.20358 1.85748 1.45846 1.67484 1.17049 1.05832 1.20876 0.97378 0.96604 0.80054 0.91370 1.21761 0.98391 0.99796 0.95142 1.22022 1.00117 0.99463 0.94665 1.20481 0.96568 0.93097 0.83382 0.93419 1.42660 1.05770 1.80221 1.09155 1.19587 0.89091 1.35642 0.92572 0.90740 1.25549 0.98509 1.03443 0.99564 1.69809 1.18847 1.54668 1.18896 0.85249 0.78605 0.78113 0.78051 1.20168 1.22281 1.20705 1.21639 0.97579 0.99984 0.95904 1.21676 1.03552 0.96235 0.93031 0.91873 0.94756 0.91623 0.89238 0.91552 0.81715 0.78262 0.75531 0.93391 0.90678 0.94191 0.94080 0.79714 0.94124 0.91285 0.92791 0.89340 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.78 71.98 0.70 -1.85 16 2 C -0.07 -1.48 5.50 29.85 0.16 -1.31 16 3 C -0.02 -0.47 5.16 -20.42 -0.11 -0.58 16 4 C -0.16 -2.05 9.96 21.08 0.21 -1.84 16 5 C -0.21 -2.13 10.92 66.81 0.73 -1.40 16 6 S 0.23 2.83 22.16 -56.49 -1.25 1.58 16 7 C -0.31 -6.31 6.45 24.08 0.16 -6.15 16 8 C 0.58 15.26 7.74 86.42 0.67 15.92 16 9 O -0.56 -18.80 13.38 -4.35 -0.06 -18.86 16 10 N -0.71 -15.63 5.07 -446.59 -2.27 -17.89 16 11 C 0.16 4.06 2.45 44.99 0.11 4.17 16 12 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 13 C -0.11 -3.33 5.49 30.59 0.17 -3.16 16 14 C -0.12 -4.57 5.50 30.60 0.17 -4.41 16 15 C 0.17 6.77 2.77 44.99 0.12 6.90 16 16 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 17 N -0.74 -37.82 5.12 -322.94 -1.65 -39.48 16 18 C -0.24 -13.33 9.93 84.03 0.83 -12.50 16 19 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 21 N -0.97 -60.53 13.06 21.65 0.28 -60.24 16 22 Si 0.97 46.87 29.55 68.60 2.03 48.89 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 26 C -0.11 -3.51 5.39 30.61 0.17 -3.35 16 27 C -0.11 -2.43 5.39 30.61 0.17 -2.26 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.03 0.83 7.60 -2.39 -0.02 0.82 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.33 8.12 -2.39 -0.02 1.32 16 32 H 0.07 1.74 6.33 -2.39 -0.02 1.72 16 33 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.41 6.49 7.72 -92.71 -0.72 5.78 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.37 20.50 7.80 -92.70 -0.72 19.78 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -71.64 374.50 1.37 -70.28 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.44 Total: 31.67 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 4.73 Total: -15.95 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -3.64 Total: -117.62 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.06 Total: -18.86 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.25 Total: 1.58 kcal Total: -71.64 1.37 -70.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034797415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.910 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds