Wall clock time and date at job start Tue Mar 31 2020 13:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47539 * 2 1 4 4 C 1.33816 * 124.52247 * 89.99982 * 3 2 1 5 5 C 1.37479 * 115.09995 * 180.02562 * 4 3 2 6 6 C 1.36648 * 113.29530 * 359.97438 * 5 4 3 7 7 C 1.46588 * 125.45604 * 180.02562 * 6 5 4 8 8 O 1.21695 * 119.99986 * 314.71228 * 7 6 5 9 9 N 1.34780 * 119.99710 * 134.70966 * 7 6 5 10 10 C 1.46925 * 120.62697 * 3.40578 * 9 7 6 11 11 C 1.52767 * 109.00694 * 233.58054 * 10 9 7 12 12 C 1.53039 * 109.38445 * 305.59515 * 11 10 9 13 13 H 1.09001 * 109.45565 * 301.21440 * 12 11 10 14 14 N 1.46496 * 109.45784 * 181.26045 * 12 11 10 15 15 C 1.36941 * 120.00235 * 84.93414 * 14 12 11 16 16 H 1.07997 * 119.99601 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00007 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00427 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99942 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46615 * 90.00239 * 19 17 15 21 21 H 1.48497 * 109.47016 * 210.00129 * 19 17 15 22 22 H 1.48492 * 109.47024 * 330.00238 * 19 17 15 23 23 C 1.53039 * 109.53950 * 61.23390 * 12 11 10 24 24 H 1.09001 * 109.49235 * 58.59093 * 23 12 11 25 25 C 1.52994 * 109.52385 * 178.66576 * 23 12 11 26 26 C 1.46920 * 120.62880 * 183.68739 * 9 7 6 27 27 S 1.70612 * 124.52195 * 269.70196 * 3 2 1 28 28 H 1.08996 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47048 * 300.00038 * 1 2 3 30 30 H 1.08998 * 109.46948 * 59.99939 * 1 2 3 31 31 H 1.08999 * 109.47225 * 239.99512 * 2 1 3 32 32 H 1.09008 * 109.47146 * 119.99548 * 2 1 3 33 33 H 1.07999 * 122.45139 * 0.02562 * 4 3 2 34 34 H 1.07994 * 123.35193 * 180.02562 * 5 4 3 35 35 H 1.08993 * 109.59465 * 353.41814 * 10 9 7 36 36 H 1.09002 * 109.58201 * 113.84833 * 10 9 7 37 37 H 1.08994 * 109.56388 * 185.55550 * 11 10 9 38 38 H 1.08995 * 109.35848 * 65.50491 * 11 10 9 39 39 H 0.96998 * 119.99940 * 264.92287 * 14 12 11 40 40 H 0.96993 * 120.00662 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.47368 * 179.85826 * 25 23 12 42 42 H 1.09001 * 109.47596 * 299.86066 * 25 23 12 43 43 H 1.09006 * 109.47242 * 59.85787 * 25 23 12 44 44 H 1.09005 * 109.58812 * 246.15545 * 26 9 7 45 45 H 1.09000 * 109.58943 * 6.58342 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7369 3.4146 0.8774 6 6 2.8462 3.7234 -0.4492 7 6 3.3007 5.0085 -0.9884 8 8 2.8741 6.0488 -0.5228 9 7 4.1911 5.0379 -1.9998 10 6 4.6586 3.7916 -2.6218 11 6 6.1860 3.7668 -2.5991 12 6 6.7245 5.0390 -3.2575 13 1 6.3587 5.1002 -4.2825 14 7 8.1890 5.0029 -3.2636 15 6 8.8538 4.3558 -4.2709 16 1 8.2984 3.8718 -5.0605 17 6 10.2415 4.3221 -4.2769 18 7 10.9184 4.9125 -3.3148 19 14 11.1484 3.4388 -5.6506 20 1 11.4142 4.3899 -6.7596 21 1 12.4356 2.9092 -5.1333 22 1 10.3161 2.3153 -6.1507 23 6 6.2478 6.2629 -2.4721 24 1 6.5925 6.1901 -1.4406 25 6 6.8137 7.5327 -3.1111 26 6 4.7171 6.3164 -2.4971 27 16 2.3616 2.3299 -1.4057 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1448 1.7373 2.0965 34 1 2.9817 4.1059 1.6702 35 1 4.2724 2.9379 -2.0651 36 1 4.3106 3.7454 -3.6537 37 1 6.5449 2.8945 -3.1453 38 1 6.5312 3.7174 -1.5665 39 1 8.6878 5.4375 -2.5543 40 1 11.8880 4.8886 -3.3188 41 1 6.4716 8.4040 -2.5526 42 1 7.9029 7.4942 -3.0931 43 1 6.4697 7.6045 -4.1430 44 1 4.3739 6.4802 -3.5187 45 1 4.3694 7.1280 -1.8580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036103523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:33 Heat of formation + Delta-G solvation = -1.160596 kcal Electronic energy + Delta-G solvation = -25122.555287 eV Core-core repulsion = 21652.456148 eV Total energy + Delta-G solvation = -3470.099139 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.17384 -38.33714 -37.43756 -34.65431 -34.03239 -32.85773 -31.51540 -29.51011 -29.04995 -26.63897 -25.44953 -24.58963 -22.88261 -22.60025 -21.72497 -21.04021 -19.57688 -18.49398 -17.91691 -17.09303 -16.25518 -16.13816 -15.24205 -15.02351 -14.88196 -14.45749 -14.18345 -14.08224 -13.79770 -13.44168 -13.33033 -13.12258 -13.04434 -12.65078 -12.47202 -12.25482 -12.07116 -11.78974 -11.75461 -11.63244 -11.43991 -11.18643 -10.97162 -10.94454 -10.80577 -10.64404 -10.42051 -10.21165 -9.95305 -9.75381 -9.64115 -8.95022 -8.83694 -8.54105 -8.48662 -6.97932 -5.79041 -3.07848 0.46970 1.24014 1.71901 2.34383 2.86340 3.20963 3.41148 3.46428 3.48134 4.37533 4.52346 4.56215 4.69223 4.91429 5.04142 5.08191 5.22687 5.23595 5.26505 5.35017 5.37768 5.48495 5.50612 5.57052 5.59553 5.67319 5.74400 5.81287 5.86631 5.93680 6.00998 6.06647 6.13764 6.22607 6.29914 6.36496 6.42123 6.51055 6.61317 6.79366 6.90714 7.03725 7.42703 7.67039 8.13112 8.39102 9.50570 10.07883 10.42863 11.43438 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.003268 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.666387 B = 8566.939934 C = 9782.429695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.210 4.210 4 C -0.149 4.149 5 C -0.065 4.065 6 C -0.258 4.258 7 C 0.589 3.411 8 O -0.537 6.537 9 N -0.598 5.598 10 C 0.095 3.905 11 C -0.149 4.149 12 C 0.184 3.816 13 H 0.049 0.951 14 N -0.720 5.720 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.110 4.110 24 H 0.070 0.930 25 C -0.136 4.136 26 C 0.122 3.878 27 S 0.219 5.781 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.246 -7.046 5.866 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.329 4.329 4 C -0.179 4.179 5 C -0.097 4.097 6 C -0.378 4.378 7 C 0.376 3.624 8 O -0.415 6.415 9 N -0.330 5.330 10 C -0.029 4.029 11 C -0.191 4.191 12 C 0.074 3.926 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.130 4.130 24 H 0.088 0.912 25 C -0.193 4.193 26 C -0.001 4.001 27 S 0.487 5.513 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.487 -6.886 4.383 22.053 hybrid contribution 0.967 -0.256 1.154 1.528 sum -19.519 -7.143 5.538 21.510 Atomic orbital electron populations 1.21800 0.94199 1.02067 1.02560 1.20130 0.96238 0.89490 1.03531 1.24380 1.07694 1.02260 0.98537 1.19883 1.04532 0.94049 0.99469 1.20612 0.97923 0.96425 0.94767 1.24511 1.15740 0.99371 0.98165 1.17039 0.78977 0.87085 0.79318 1.90804 1.57422 1.33269 1.60040 1.48051 1.42093 1.08592 1.34224 1.22154 0.97287 0.85495 0.98009 1.22594 0.91552 1.02508 1.02412 1.20193 0.86114 0.90232 0.96091 0.93344 1.42404 0.98928 1.65145 1.29541 1.19211 0.89130 1.26649 1.01920 0.91223 1.24729 0.96399 1.01277 0.98453 1.69655 1.06317 1.48514 1.33537 0.86225 0.79398 0.79224 0.81544 1.21766 1.21853 1.20790 1.21751 0.93145 0.97270 1.00879 0.91182 1.21656 1.02850 0.95122 0.99715 1.21763 0.93902 0.84894 0.99516 1.83181 1.59062 1.01804 1.07234 0.91933 0.92230 0.92412 0.90603 0.89879 0.84136 0.83456 0.90114 0.91077 0.90370 0.92133 0.78199 0.93513 0.93770 0.90690 0.93003 0.91289 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.05 -0.38 6.36 -27.89 -0.18 -0.56 16 3 C -0.21 -1.99 5.53 -35.86 -0.20 -2.19 16 4 C -0.15 -1.48 10.00 -41.41 -0.41 -1.90 16 5 C -0.06 -0.78 10.24 -40.43 -0.41 -1.19 16 6 C -0.26 -3.44 5.48 -36.79 -0.20 -3.65 16 7 C 0.59 9.32 7.54 -12.89 -0.10 9.23 16 8 O -0.54 -9.99 16.51 5.19 0.09 -9.90 16 9 N -0.60 -8.92 2.98 -174.61 -0.52 -9.44 16 10 C 0.09 1.31 5.85 -3.93 -0.02 1.28 16 11 C -0.15 -2.53 5.64 -26.83 -0.15 -2.68 16 12 C 0.18 3.46 2.20 -67.89 -0.15 3.31 16 13 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 14 N -0.72 -17.14 4.41 -53.39 -0.24 -17.37 16 15 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 19 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.11 -1.83 2.46 -90.51 -0.22 -2.05 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 C -0.14 -2.20 9.02 37.15 0.34 -1.86 16 26 C 0.12 1.81 5.71 -3.72 -0.02 1.78 16 27 S 0.22 2.30 19.84 -107.50 -2.13 0.16 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.08 1.02 4.00 -30.21 -0.12 0.90 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.38 9.90 7.50 -40.82 -0.31 9.59 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.42 7.37 -51.93 -0.38 1.04 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.38 7.02 -51.93 -0.36 1.01 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -30.94 372.96 -10.15 -41.10 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.06 Total: 7.71 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.61 Total: -7.92 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.03 Total: -53.63 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.13 Total: 0.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.94 -10.15 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036103523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.936 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds