Wall clock time and date at job start Tue Mar 31 2020 13:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47539 * 2 1 4 4 C 1.33816 * 124.52247 * 89.99982 * 3 2 1 5 5 C 1.37479 * 115.09995 * 180.02562 * 4 3 2 6 6 C 1.36648 * 113.29530 * 359.97438 * 5 4 3 7 7 C 1.46588 * 125.45604 * 180.02562 * 6 5 4 8 8 O 1.21695 * 119.99986 * 314.71228 * 7 6 5 9 9 N 1.34780 * 119.99710 * 134.70966 * 7 6 5 10 10 C 1.46925 * 120.62697 * 3.40578 * 9 7 6 11 11 C 1.52767 * 109.00694 * 233.58054 * 10 9 7 12 12 C 1.53039 * 109.38445 * 305.59515 * 11 10 9 13 13 H 1.09001 * 109.45565 * 301.21440 * 12 11 10 14 14 N 1.46496 * 109.45784 * 181.26045 * 12 11 10 15 15 C 1.36941 * 120.00235 * 84.93414 * 14 12 11 16 16 H 1.07997 * 119.99601 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00007 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00427 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99942 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46615 * 90.00239 * 19 17 15 21 21 H 1.48497 * 109.47016 * 210.00129 * 19 17 15 22 22 H 1.48492 * 109.47024 * 330.00238 * 19 17 15 23 23 C 1.53039 * 109.53950 * 61.23390 * 12 11 10 24 24 H 1.09001 * 109.49235 * 58.59093 * 23 12 11 25 25 C 1.52994 * 109.52385 * 178.66576 * 23 12 11 26 26 C 1.46920 * 120.62880 * 183.68739 * 9 7 6 27 27 S 1.70612 * 124.52195 * 269.70196 * 3 2 1 28 28 H 1.08996 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47048 * 300.00038 * 1 2 3 30 30 H 1.08998 * 109.46948 * 59.99939 * 1 2 3 31 31 H 1.08999 * 109.47225 * 239.99512 * 2 1 3 32 32 H 1.09008 * 109.47146 * 119.99548 * 2 1 3 33 33 H 1.07999 * 122.45139 * 0.02562 * 4 3 2 34 34 H 1.07994 * 123.35193 * 180.02562 * 5 4 3 35 35 H 1.08993 * 109.59465 * 353.41814 * 10 9 7 36 36 H 1.09002 * 109.58201 * 113.84833 * 10 9 7 37 37 H 1.08994 * 109.56388 * 185.55550 * 11 10 9 38 38 H 1.08995 * 109.35848 * 65.50491 * 11 10 9 39 39 H 0.96998 * 119.99940 * 264.92287 * 14 12 11 40 40 H 0.96993 * 120.00662 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.47368 * 179.85826 * 25 23 12 42 42 H 1.09001 * 109.47596 * 299.86066 * 25 23 12 43 43 H 1.09006 * 109.47242 * 59.85787 * 25 23 12 44 44 H 1.09005 * 109.58812 * 246.15545 * 26 9 7 45 45 H 1.09000 * 109.58943 * 6.58342 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7369 3.4146 0.8774 6 6 2.8462 3.7234 -0.4492 7 6 3.3007 5.0085 -0.9884 8 8 2.8741 6.0488 -0.5228 9 7 4.1911 5.0379 -1.9998 10 6 4.6586 3.7916 -2.6218 11 6 6.1860 3.7668 -2.5991 12 6 6.7245 5.0390 -3.2575 13 1 6.3587 5.1002 -4.2825 14 7 8.1890 5.0029 -3.2636 15 6 8.8538 4.3558 -4.2709 16 1 8.2984 3.8718 -5.0605 17 6 10.2415 4.3221 -4.2769 18 7 10.9184 4.9125 -3.3148 19 14 11.1484 3.4388 -5.6506 20 1 11.4142 4.3899 -6.7596 21 1 12.4356 2.9092 -5.1333 22 1 10.3161 2.3153 -6.1507 23 6 6.2478 6.2629 -2.4721 24 1 6.5925 6.1901 -1.4406 25 6 6.8137 7.5327 -3.1111 26 6 4.7171 6.3164 -2.4971 27 16 2.3616 2.3299 -1.4057 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1448 1.7373 2.0965 34 1 2.9817 4.1059 1.6702 35 1 4.2724 2.9379 -2.0651 36 1 4.3106 3.7454 -3.6537 37 1 6.5449 2.8945 -3.1453 38 1 6.5312 3.7174 -1.5665 39 1 8.6878 5.4375 -2.5543 40 1 11.8880 4.8886 -3.3188 41 1 6.4716 8.4040 -2.5526 42 1 7.9029 7.4942 -3.0931 43 1 6.4697 7.6045 -4.1430 44 1 4.3739 6.4802 -3.5187 45 1 4.3694 7.1280 -1.8580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036103523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:33 Heat of formation + Delta-G solvation = -18.300128 kcal Electronic energy + Delta-G solvation = -25123.298513 eV Core-core repulsion = 21652.456148 eV Total energy + Delta-G solvation = -3470.842365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40362 -39.39011 -38.61388 -36.22864 -34.83810 -34.33005 -33.10820 -31.12813 -30.04457 -27.75970 -26.86793 -25.79522 -24.42321 -23.28583 -23.12485 -22.14235 -20.96246 -19.49696 -19.09477 -18.92794 -17.36437 -17.15616 -16.75648 -16.25179 -15.99717 -15.67681 -15.51530 -15.18618 -14.96101 -14.91464 -14.49229 -14.29134 -13.99202 -13.90993 -13.70033 -13.37895 -13.14128 -12.99700 -12.85939 -12.79453 -12.71505 -12.50251 -12.39020 -12.14043 -12.12962 -12.03962 -11.86642 -11.71835 -11.59524 -11.19336 -11.16693 -10.86023 -9.87504 -9.58244 -9.40604 -8.94962 -7.90043 -5.17935 -0.42339 0.36042 0.88650 1.42967 1.49822 1.50654 1.58769 1.73516 2.08747 2.58965 3.41048 3.44055 3.74207 3.76946 3.80619 3.96505 4.04143 4.15373 4.25636 4.33045 4.36060 4.42385 4.45465 4.49221 4.62891 4.74052 4.74965 4.78881 4.80599 4.91904 4.93492 4.99611 5.05228 5.10858 5.18412 5.22444 5.27914 5.35648 5.37909 5.44251 5.47455 5.56230 5.59657 6.23012 6.31182 6.93133 7.37744 8.13099 8.36748 9.33572 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.003268 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.666387 B = 8566.939934 C = 9782.429695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.158 4.158 5 C -0.065 4.065 6 C -0.299 4.299 7 C 0.588 3.412 8 O -0.573 6.573 9 N -0.599 5.599 10 C 0.102 3.898 11 C -0.139 4.139 12 C 0.180 3.820 13 H 0.052 0.948 14 N -0.731 5.731 15 C -0.229 4.229 16 H 0.079 0.921 17 C -0.077 4.077 18 N -0.972 5.972 19 Si 0.968 3.032 20 H -0.290 1.290 21 H -0.301 1.301 22 H -0.267 1.267 23 C -0.100 4.100 24 H 0.051 0.949 25 C -0.129 4.129 26 C 0.127 3.873 27 S 0.242 5.758 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.382 -9.061 5.156 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.317 4.317 4 C -0.188 4.188 5 C -0.098 4.098 6 C -0.419 4.419 7 C 0.377 3.623 8 O -0.455 6.455 9 N -0.330 5.330 10 C -0.021 4.021 11 C -0.180 4.180 12 C 0.072 3.928 13 H 0.070 0.930 14 N -0.370 5.370 15 C -0.361 4.361 16 H 0.097 0.903 17 C -0.269 4.269 18 N -0.623 5.623 19 Si 0.798 3.202 20 H -0.218 1.218 21 H -0.228 1.228 22 H -0.191 1.191 23 C -0.120 4.120 24 H 0.070 0.930 25 C -0.187 4.187 26 C 0.005 3.995 27 S 0.511 5.489 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.676 -8.925 3.645 24.640 hybrid contribution 1.523 0.326 1.428 2.113 sum -21.153 -8.599 5.074 23.391 Atomic orbital electron populations 1.21801 0.93432 1.03075 1.02217 1.20294 0.96784 0.87768 1.04756 1.24802 1.05833 1.03213 0.97834 1.20066 1.04649 0.93238 1.00843 1.20827 0.97238 0.97356 0.94401 1.24407 1.18444 0.99748 0.99276 1.17381 0.78551 0.87636 0.78776 1.90770 1.58792 1.34858 1.61076 1.48109 1.41847 1.08827 1.34208 1.22164 0.94705 0.85711 0.99529 1.22381 0.93922 1.00910 1.00819 1.20413 0.83478 0.92085 0.96858 0.92951 1.42584 1.00980 1.64797 1.28598 1.19604 0.89413 1.25094 1.02010 0.90284 1.25496 0.97479 1.03051 1.00886 1.69820 1.05933 1.50825 1.35715 0.85214 0.77823 0.78418 0.78776 1.21765 1.22817 1.19138 1.21614 0.94565 0.96490 0.99375 0.93001 1.21570 1.00609 0.95844 1.00662 1.21692 0.92131 0.85102 1.00616 1.82978 1.58581 1.00247 1.07110 0.90308 0.92452 0.92920 0.89659 0.88404 0.81882 0.83733 0.88587 0.88835 0.90963 0.93919 0.79799 0.94303 0.91663 0.93954 0.92054 0.89246 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.65 16 2 C -0.06 -0.60 6.36 29.85 0.19 -0.41 16 3 C -0.20 -3.22 5.53 24.68 0.14 -3.08 16 4 C -0.16 -2.82 10.00 21.08 0.21 -2.61 16 5 C -0.06 -1.50 10.24 21.72 0.22 -1.28 16 6 C -0.30 -7.72 5.48 24.08 0.13 -7.59 16 7 C 0.59 18.39 7.54 86.42 0.65 19.04 16 8 O -0.57 -21.52 16.51 -4.33 -0.07 -21.59 16 9 N -0.60 -17.28 2.98 -824.56 -2.46 -19.73 16 10 C 0.10 2.65 5.85 86.22 0.50 3.15 16 11 C -0.14 -4.62 5.64 30.53 0.17 -4.45 16 12 C 0.18 6.71 2.20 45.02 0.10 6.81 16 13 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 14 N -0.73 -35.28 4.41 -322.83 -1.42 -36.71 16 15 C -0.23 -12.15 9.93 84.03 0.83 -11.32 16 16 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 17 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 18 N -0.97 -58.92 13.06 21.65 0.28 -58.63 16 19 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C -0.10 -3.32 2.46 -10.72 -0.03 -3.34 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 C -0.13 -4.16 9.02 71.98 0.65 -3.51 16 26 C 0.13 3.64 5.71 86.36 0.49 4.13 16 27 S 0.24 4.56 19.84 -56.49 -1.12 3.44 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.10 2.24 4.00 -16.20 -0.06 2.17 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.37 19.78 7.50 -92.71 -0.70 19.08 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.04 1.64 7.37 -2.39 -0.02 1.62 16 43 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.09 2.59 7.02 -2.39 -0.02 2.58 16 Total: -1.00 -67.75 372.96 2.92 -64.83 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.23 Total: 30.13 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 5.45 Total: -8.98 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -3.60 Total: -115.07 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.07 Total: -21.59 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.12 Total: 3.44 kcal Total: -67.75 2.92 -64.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036103523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.528 kcal (2) G-P(sol) polarization free energy of solvation -67.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds