Wall clock time and date at job start Tue Mar 31 2020 13:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46717 * 2 1 4 4 C 1.33813 * 124.52529 * 90.00318 * 3 2 1 5 5 C 1.37468 * 115.10037 * 179.97438 * 4 3 2 6 6 C 1.36647 * 113.29975 * 0.02562 * 5 4 3 7 7 C 1.46588 * 125.46006 * 179.97438 * 6 5 4 8 8 O 1.21704 * 119.99646 * 30.42528 * 7 6 5 9 9 N 1.34769 * 120.00006 * 210.41948 * 7 6 5 10 10 C 1.46929 * 120.63291 * 6.36630 * 9 7 6 11 11 C 1.53190 * 108.77670 * 126.36938 * 10 9 7 12 12 C 1.53043 * 109.31319 * 54.63484 * 11 10 9 13 13 H 1.08994 * 109.46322 * 58.64397 * 12 11 10 14 14 N 1.46498 * 109.45933 * 178.62018 * 12 11 10 15 15 C 1.36949 * 119.99424 * 274.99863 * 14 12 11 16 16 H 1.07994 * 119.99750 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99484 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00222 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99578 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47070 * 59.99988 * 19 17 15 21 21 H 1.48497 * 109.47027 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47243 * 299.99966 * 19 17 15 23 23 C 1.53050 * 109.53646 * 298.63365 * 12 11 10 24 24 H 1.09000 * 109.49953 * 301.41448 * 23 12 11 25 25 C 1.53004 * 109.49324 * 181.31763 * 23 12 11 26 26 C 1.46930 * 120.63088 * 186.08432 * 9 7 6 27 27 S 1.70620 * 124.51776 * 269.70131 * 3 2 1 28 28 H 1.09001 * 109.46913 * 299.99925 * 1 2 3 29 29 H 1.08993 * 109.47739 * 60.00348 * 1 2 3 30 30 H 1.09006 * 109.47040 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46577 * 239.99653 * 2 1 3 32 32 H 1.08996 * 109.47008 * 119.99636 * 2 1 3 33 33 H 1.07997 * 122.44701 * 359.97438 * 4 3 2 34 34 H 1.08006 * 123.35222 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.58462 * 246.15482 * 10 9 7 36 36 H 1.08996 * 109.58240 * 6.58010 * 10 9 7 37 37 H 1.08995 * 109.49751 * 174.58554 * 11 10 9 38 38 H 1.09006 * 109.49553 * 294.65048 * 11 10 9 39 39 H 0.96993 * 120.00646 * 94.99842 * 14 12 11 40 40 H 0.97001 * 119.99586 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.47060 * 60.00106 * 25 23 12 42 42 H 1.09001 * 109.46313 * 180.02562 * 25 23 12 43 43 H 1.09002 * 109.47008 * 299.99731 * 25 23 12 44 44 H 1.09006 * 109.58152 * 353.42114 * 26 9 7 45 45 H 1.09001 * 109.58751 * 113.83793 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1359 1.1025 5 6 2.7376 3.4143 0.8773 6 6 2.8466 3.7233 -0.4493 7 6 3.3008 5.0085 -0.9885 8 8 4.1041 5.6792 -0.3673 9 7 2.8289 5.4472 -2.1722 10 6 1.7580 4.7199 -2.8672 11 6 0.6208 5.6974 -3.1802 12 6 1.1789 6.8903 -3.9598 13 1 1.6461 6.5369 -4.8789 14 7 0.0883 7.8112 -4.2894 15 6 -0.6700 7.6011 -5.4103 16 1 -0.4637 6.7568 -6.0513 17 6 -1.7030 8.4741 -5.7229 18 7 -1.9534 9.5039 -4.9425 19 14 -2.7369 8.1879 -7.2522 20 1 -3.4021 6.8634 -7.1593 21 1 -3.7662 9.2528 -7.3602 22 1 -1.8640 8.2202 -8.4531 23 6 2.2200 7.6179 -3.1058 24 1 1.7595 7.9500 -2.1753 25 6 2.7534 8.8293 -3.8733 26 6 3.3714 6.6652 -2.7894 27 16 2.3614 2.3300 -1.4058 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1440 1.7377 2.0964 34 1 2.9817 4.1060 1.6701 35 1 2.1446 4.2997 -3.7957 36 1 1.3860 3.9190 -2.2282 37 1 -0.1374 5.1936 -3.7797 38 1 0.1750 6.0471 -2.2489 39 1 -0.0967 8.5697 -3.7139 40 1 -2.6755 10.1136 -5.1609 41 1 1.9305 9.5076 -4.0988 42 1 3.4951 9.3468 -3.2649 43 1 3.2149 8.4961 -4.8028 44 1 4.0636 7.1474 -2.0991 45 1 3.8923 6.4069 -3.7114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036103526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:36 Heat of formation + Delta-G solvation = -17.609482 kcal Electronic energy + Delta-G solvation = -25182.754035 eV Core-core repulsion = 21711.941619 eV Total energy + Delta-G solvation = -3470.812416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39563 -39.41159 -38.58393 -36.22922 -34.83365 -34.34393 -33.10872 -31.11986 -30.04009 -27.75283 -26.88726 -25.78946 -24.42408 -23.28010 -23.12940 -22.14886 -20.97468 -19.46861 -19.11656 -18.91898 -17.32162 -17.11119 -16.74331 -16.30451 -16.02798 -15.68434 -15.49404 -15.15141 -14.98415 -14.84384 -14.51081 -14.32871 -14.05877 -13.89301 -13.63792 -13.36052 -13.18146 -13.05304 -12.83683 -12.78454 -12.68990 -12.49315 -12.38104 -12.19176 -12.14099 -12.01203 -11.86661 -11.71364 -11.55540 -11.18113 -11.16357 -10.84811 -9.89040 -9.56926 -9.39078 -8.94789 -7.89747 -5.17796 -0.47506 0.41253 0.90443 1.40063 1.50010 1.52199 1.58040 1.79659 2.11443 2.59368 3.41289 3.44351 3.74293 3.77243 3.81043 3.95417 4.03415 4.15753 4.25155 4.32487 4.35757 4.42461 4.45602 4.49543 4.61535 4.73082 4.75127 4.79153 4.80865 4.92114 4.92500 4.99214 5.05123 5.10921 5.18924 5.22704 5.28727 5.36853 5.37844 5.44435 5.47675 5.56223 5.59575 6.24248 6.31248 6.94884 7.37848 8.13170 8.36939 9.33714 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.003438 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.797181 B = 8142.827921 C = 9589.858162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C -0.198 4.198 4 C -0.161 4.161 5 C -0.058 4.058 6 C -0.305 4.305 7 C 0.587 3.413 8 O -0.575 6.575 9 N -0.603 5.603 10 C 0.102 3.898 11 C -0.139 4.139 12 C 0.180 3.820 13 H 0.054 0.946 14 N -0.731 5.731 15 C -0.232 4.232 16 H 0.080 0.920 17 C -0.076 4.076 18 N -0.972 5.972 19 Si 0.969 3.031 20 H -0.277 1.277 21 H -0.301 1.301 22 H -0.278 1.278 23 C -0.101 4.101 24 H 0.049 0.951 25 C -0.128 4.128 26 C 0.127 3.873 27 S 0.248 5.752 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.837 -20.963 9.008 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.318 4.318 4 C -0.191 4.191 5 C -0.091 4.091 6 C -0.425 4.425 7 C 0.376 3.624 8 O -0.457 6.457 9 N -0.334 5.334 10 C -0.022 4.022 11 C -0.180 4.180 12 C 0.072 3.928 13 H 0.072 0.928 14 N -0.370 5.370 15 C -0.364 4.364 16 H 0.098 0.902 17 C -0.268 4.268 18 N -0.623 5.623 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.228 1.228 22 H -0.204 1.204 23 C -0.121 4.121 24 H 0.068 0.932 25 C -0.186 4.186 26 C 0.005 3.995 27 S 0.518 5.482 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.107 -20.998 7.575 24.504 hybrid contribution -0.943 1.212 1.183 1.938 sum 9.163 -19.787 8.758 23.498 Atomic orbital electron populations 1.21821 0.93719 1.03068 1.02184 1.20286 0.96502 0.87810 1.04821 1.24940 1.05364 1.03202 0.98294 1.20067 1.04892 0.93237 1.00856 1.20876 0.96429 0.97257 0.94585 1.24443 1.18948 0.99851 0.99227 1.17378 0.80359 0.84465 0.80158 1.90766 1.36756 1.58693 1.59503 1.48067 1.37522 1.27207 1.20555 1.22278 0.87115 0.94479 0.98304 1.22460 0.97593 0.97648 1.00278 1.20417 0.87763 0.89404 0.95256 0.92819 1.42579 1.36056 1.30306 1.28021 1.19588 1.08433 1.07664 1.00743 0.90238 1.25496 1.01365 0.97946 1.01967 1.69821 1.34047 1.17534 1.40890 0.85280 0.78273 0.76733 0.79896 1.20336 1.22814 1.20437 1.21540 0.95866 0.96203 0.98507 0.93207 1.21566 1.00433 0.96750 0.99892 1.21600 0.95351 0.83934 0.98629 1.83068 1.58787 0.99663 1.06724 0.92584 0.93049 0.90293 0.89513 0.88249 0.81904 0.83692 0.88641 0.88592 0.90875 0.94013 0.79825 0.94291 0.93979 0.91713 0.91978 0.89593 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 71.98 0.71 -0.84 16 2 C -0.06 -0.56 6.37 29.85 0.19 -0.37 16 3 C -0.20 -3.16 5.53 24.68 0.14 -3.03 16 4 C -0.16 -2.80 9.99 21.08 0.21 -2.59 16 5 C -0.06 -1.32 10.14 21.72 0.22 -1.10 16 6 C -0.30 -7.82 5.73 24.08 0.14 -7.68 16 7 C 0.59 18.43 7.58 86.42 0.66 19.09 16 8 O -0.58 -21.71 16.40 -4.36 -0.07 -21.78 16 9 N -0.60 -17.42 2.98 -824.54 -2.46 -19.88 16 10 C 0.10 2.63 5.52 86.36 0.48 3.11 16 11 C -0.14 -4.62 5.66 30.67 0.17 -4.45 16 12 C 0.18 6.73 2.20 45.02 0.10 6.83 16 13 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 14 N -0.73 -35.43 4.41 -322.79 -1.42 -36.85 16 15 C -0.23 -12.34 9.93 84.03 0.83 -11.51 16 16 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 17 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 18 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 19 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 23 C -0.10 -3.37 2.44 -10.86 -0.03 -3.40 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 C -0.13 -4.17 9.03 71.98 0.65 -3.52 16 26 C 0.13 3.66 5.70 86.22 0.49 4.15 16 27 S 0.25 4.60 19.28 -56.49 -1.09 3.51 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 35 H 0.10 2.06 8.14 -2.38 -0.02 2.05 16 36 H 0.10 2.24 3.99 -18.68 -0.07 2.16 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.37 19.87 7.51 -92.71 -0.70 19.18 16 40 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.04 1.64 7.36 -2.39 -0.02 1.62 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.09 2.60 7.00 -2.38 -0.02 2.58 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -67.98 372.10 2.92 -65.05 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.22 Total: 30.56 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.43 Total: -9.09 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -3.60 Total: -115.44 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.07 Total: -21.78 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.09 Total: 3.51 kcal Total: -67.98 2.92 -65.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036103526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.444 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds