Wall clock time and date at job start Tue Mar 31 2020 13:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46958 * 2 1 4 4 C 1.37470 * 123.35447 * 265.02620 * 3 2 1 5 5 C 1.33817 * 115.10441 * 179.97438 * 4 3 2 6 6 S 1.70622 * 110.95325 * 359.72390 * 5 4 3 7 7 C 1.36651 * 123.34888 * 85.00374 * 3 2 1 8 8 C 1.46579 * 125.45762 * 0.02562 * 7 3 2 9 9 O 1.21699 * 120.00549 * 49.96616 * 8 7 3 10 10 N 1.34784 * 119.99471 * 229.96570 * 8 7 3 11 11 C 1.46925 * 120.63086 * 355.84265 * 10 8 7 12 12 C 1.53194 * 108.77625 * 126.37123 * 11 10 8 13 13 C 1.53042 * 109.31173 * 54.63028 * 12 11 10 14 14 H 1.09000 * 109.46029 * 58.64297 * 13 12 11 15 15 N 1.46498 * 109.45729 * 178.61612 * 13 12 11 16 16 C 1.36936 * 120.00440 * 275.00232 * 15 13 12 17 17 H 1.08004 * 119.99780 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00426 * 180.02562 * 16 15 13 19 19 N 1.31613 * 119.99762 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46886 * 89.99519 * 20 18 16 22 22 H 1.48496 * 109.46922 * 210.00185 * 20 18 16 23 23 H 1.48505 * 109.46858 * 329.99808 * 20 18 16 24 24 C 1.53068 * 109.66022 * 298.69953 * 13 12 11 25 25 H 1.09002 * 109.39326 * 301.27864 * 24 13 12 26 26 C 1.53002 * 109.62563 * 181.17188 * 24 13 12 27 27 C 1.46927 * 120.62785 * 175.81488 * 10 8 7 28 28 H 1.08998 * 109.47235 * 59.99621 * 1 2 3 29 29 H 1.09003 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47295 * 299.99625 * 1 2 3 31 31 H 1.09002 * 109.46887 * 240.00721 * 2 1 3 32 32 H 1.08998 * 109.47235 * 120.00379 * 2 1 3 33 33 H 1.08003 * 122.44721 * 0.02562 * 4 3 2 34 34 H 1.07999 * 124.52259 * 180.02562 * 5 4 3 35 35 H 1.09008 * 109.58107 * 246.15119 * 11 10 8 36 36 H 1.08991 * 109.58916 * 6.58084 * 11 10 8 37 37 H 1.08995 * 109.49928 * 174.58069 * 12 11 10 38 38 H 1.08997 * 109.49360 * 294.64865 * 12 11 10 39 39 H 0.97006 * 120.00268 * 95.00534 * 15 13 12 40 40 H 0.97007 * 119.99902 * 180.02562 * 19 18 16 41 41 H 1.09006 * 109.46840 * 300.11008 * 26 24 13 42 42 H 1.08996 * 109.46922 * 60.10638 * 26 24 13 43 43 H 1.08999 * 109.47617 * 180.11010 * 26 24 13 44 44 H 1.09001 * 109.58710 * 353.42647 * 27 10 8 45 45 H 1.09001 * 109.58054 * 113.70103 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1003 -1.1439 5 6 2.8033 3.3546 -0.9527 6 16 2.7845 3.7592 0.7048 7 6 2.1889 2.1622 1.1372 8 6 1.9006 1.7021 2.4987 9 8 2.3485 0.6403 2.8899 10 7 1.1393 2.4551 3.3173 11 6 0.6669 3.7797 2.8922 12 6 -0.8551 3.8366 3.0566 13 6 -1.2226 3.4704 4.4964 14 1 -0.7354 4.1629 5.1829 15 7 -2.6752 3.5559 4.6661 16 6 -3.2606 4.7582 4.9613 17 1 -2.6513 5.6433 5.0694 18 6 -4.6369 4.8391 5.1226 19 7 -5.3794 3.7603 4.9913 20 14 -5.4353 6.4791 5.5259 21 1 -5.7912 7.1795 4.2658 22 1 -6.6635 6.2477 6.3278 23 1 -4.4854 7.3136 6.3049 24 6 -0.7570 2.0442 4.7999 25 1 -1.2265 1.3535 4.0995 26 6 -1.1507 1.6685 6.2299 27 6 0.7657 1.9664 4.6516 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.3107 1.6545 -2.1254 34 1 3.1121 4.0233 -1.7425 35 1 1.1302 4.5486 3.5105 36 1 0.9278 3.9424 1.8465 37 1 -1.2074 4.8443 2.8363 38 1 -1.3217 3.1299 2.3705 39 1 -3.2225 2.7609 4.5694 40 1 -6.3413 3.8169 5.1036 41 1 -0.6819 2.3606 6.9295 42 1 -2.2342 1.7239 6.3349 43 1 -0.8164 0.6534 6.4440 44 1 1.0918 0.9328 4.7668 45 1 1.2391 2.5860 5.4133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036300718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:58 Heat of formation + Delta-G solvation = -0.427333 kcal Electronic energy + Delta-G solvation = -25830.854389 eV Core-core repulsion = 22360.787047 eV Total energy + Delta-G solvation = -3470.067342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27494 -38.52777 -37.33700 -34.63447 -32.93916 -32.88048 -31.49624 -29.77059 -29.20418 -26.60743 -25.44998 -24.62422 -22.90730 -22.44541 -21.71749 -20.90428 -19.50425 -18.34494 -17.92702 -17.09132 -16.36715 -15.96256 -15.16974 -14.96648 -14.83931 -14.14871 -14.11962 -13.93475 -13.76678 -13.54038 -13.32626 -13.16755 -12.96151 -12.51163 -12.40112 -12.29293 -12.02575 -11.71571 -11.63741 -11.50126 -11.18814 -11.08107 -10.95374 -10.88205 -10.80027 -10.63989 -10.42167 -10.21059 -9.90017 -9.75414 -9.63641 -8.95056 -8.87876 -8.48970 -8.47545 -6.97882 -5.79069 -3.07718 0.50714 1.27068 1.74450 2.33731 2.85022 3.20771 3.41117 3.46630 3.48204 4.51607 4.56262 4.65610 4.99404 5.03200 5.07132 5.22378 5.23955 5.28641 5.33580 5.35630 5.51072 5.56719 5.60112 5.67006 5.67358 5.77136 5.87062 5.92019 5.94293 6.06516 6.12810 6.14770 6.26598 6.30426 6.32763 6.37004 6.42353 6.51649 6.61742 6.79679 6.90680 7.03941 7.44308 7.67195 8.14977 8.39097 9.50676 10.07988 10.42978 11.43416 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.003585 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.334653 B = 7808.374968 C = 8254.830679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.034 4.034 4 C -0.140 4.140 5 C -0.245 4.245 6 S 0.210 5.790 7 C -0.257 4.257 8 C 0.592 3.408 9 O -0.535 6.535 10 N -0.597 5.597 11 C 0.095 3.905 12 C -0.148 4.148 13 C 0.184 3.816 14 H 0.048 0.952 15 N -0.720 5.720 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.904 3.096 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.109 4.109 25 H 0.069 0.931 26 C -0.135 4.135 27 C 0.121 3.879 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.026 -3.009 -10.357 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.048 4.048 4 C -0.171 4.171 5 C -0.382 4.382 6 S 0.479 5.521 7 C -0.377 4.377 8 C 0.379 3.621 9 O -0.413 6.413 10 N -0.329 5.329 11 C -0.029 4.029 12 C -0.190 4.190 13 C 0.073 3.927 14 H 0.066 0.934 15 N -0.360 5.360 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.735 3.265 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.129 4.129 25 H 0.088 0.912 26 C -0.193 4.193 27 C -0.001 4.001 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.590 -2.032 -9.261 19.982 hybrid contribution -1.126 -0.329 -0.991 1.536 sum 16.464 -2.361 -10.252 19.538 Atomic orbital electron populations 1.21705 0.94169 1.02011 1.02276 1.20403 0.96366 0.90892 1.03781 1.19368 0.97724 0.97280 0.90465 1.19854 1.03529 0.94230 0.99495 1.25295 1.09133 1.01433 1.02385 1.83194 1.60320 1.10289 0.98326 1.24364 1.16246 0.99431 0.97697 1.16977 0.78407 0.83794 0.82912 1.90784 1.52434 1.22924 1.75198 1.48061 1.49992 1.18469 1.16388 1.22198 0.97108 0.83094 1.00486 1.22659 0.91846 1.02946 1.01507 1.20199 0.86837 0.92913 0.92706 0.93389 1.42400 1.00154 1.09188 1.84275 1.19216 0.90280 0.87581 1.39887 0.91238 1.24716 0.96289 0.97001 1.02752 1.69657 1.04856 1.26937 1.56558 0.86235 0.78975 0.83436 0.77808 1.21793 1.21831 1.20785 1.21744 0.93618 0.99208 0.98378 0.91232 1.21651 1.03377 0.99499 0.94797 1.21749 0.95432 1.00917 0.81986 0.92607 0.92087 0.92475 0.90803 0.89351 0.84034 0.81572 0.91129 0.90140 0.90474 0.92154 0.78208 0.93526 0.93017 0.90708 0.93774 0.89240 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 37.16 0.37 -1.29 16 2 C -0.08 -0.87 5.94 -27.88 -0.17 -1.03 16 3 C -0.03 -0.41 5.16 -105.48 -0.54 -0.96 16 4 C -0.14 -1.40 9.96 -41.41 -0.41 -1.81 16 5 C -0.25 -2.25 10.92 29.18 0.32 -1.93 16 6 S 0.21 2.17 20.22 -107.50 -2.17 0.00 16 7 C -0.26 -3.43 5.34 -36.79 -0.20 -3.62 16 8 C 0.59 9.16 7.17 -12.89 -0.09 9.07 16 9 O -0.53 -9.58 15.15 5.19 0.08 -9.50 16 10 N -0.60 -8.77 2.97 -174.34 -0.52 -9.29 16 11 C 0.10 1.31 5.94 -3.71 -0.02 1.28 16 12 C -0.15 -2.49 5.66 -26.61 -0.15 -2.64 16 13 C 0.18 3.44 2.19 -67.87 -0.15 3.29 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -17.06 4.41 -53.37 -0.24 -17.30 16 16 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 17 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 20 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.11 -1.79 2.46 -90.49 -0.22 -2.01 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 C -0.14 -2.17 9.03 37.16 0.34 -1.84 16 27 C 0.12 1.78 5.70 -3.71 -0.02 1.76 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 32 H 0.09 1.19 6.69 -51.93 -0.35 0.84 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.08 1.01 4.24 -35.46 -0.15 0.86 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.38 9.85 7.52 -40.82 -0.31 9.54 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.41 7.38 -51.93 -0.38 1.03 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.35 7.03 -51.93 -0.36 0.98 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -30.47 370.24 -9.78 -40.26 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.01 Total: 8.76 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.20 Total: -8.62 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.03 Total: -53.30 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.17 Total: 0.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.47 -9.78 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036300718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.830 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds