Wall clock time and date at job start Tue Mar 31 2020 13:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46958 * 2 1 4 4 C 1.37470 * 123.35447 * 265.02620 * 3 2 1 5 5 C 1.33817 * 115.10441 * 179.97438 * 4 3 2 6 6 S 1.70622 * 110.95325 * 359.72390 * 5 4 3 7 7 C 1.36651 * 123.34888 * 85.00374 * 3 2 1 8 8 C 1.46579 * 125.45762 * 0.02562 * 7 3 2 9 9 O 1.21699 * 120.00549 * 49.96616 * 8 7 3 10 10 N 1.34784 * 119.99471 * 229.96570 * 8 7 3 11 11 C 1.46925 * 120.63086 * 355.84265 * 10 8 7 12 12 C 1.53194 * 108.77625 * 126.37123 * 11 10 8 13 13 C 1.53042 * 109.31173 * 54.63028 * 12 11 10 14 14 H 1.09000 * 109.46029 * 58.64297 * 13 12 11 15 15 N 1.46498 * 109.45729 * 178.61612 * 13 12 11 16 16 C 1.36936 * 120.00440 * 275.00232 * 15 13 12 17 17 H 1.08004 * 119.99780 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00426 * 180.02562 * 16 15 13 19 19 N 1.31613 * 119.99762 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46886 * 89.99519 * 20 18 16 22 22 H 1.48496 * 109.46922 * 210.00185 * 20 18 16 23 23 H 1.48505 * 109.46858 * 329.99808 * 20 18 16 24 24 C 1.53068 * 109.66022 * 298.69953 * 13 12 11 25 25 H 1.09002 * 109.39326 * 301.27864 * 24 13 12 26 26 C 1.53002 * 109.62563 * 181.17188 * 24 13 12 27 27 C 1.46927 * 120.62785 * 175.81488 * 10 8 7 28 28 H 1.08998 * 109.47235 * 59.99621 * 1 2 3 29 29 H 1.09003 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47295 * 299.99625 * 1 2 3 31 31 H 1.09002 * 109.46887 * 240.00721 * 2 1 3 32 32 H 1.08998 * 109.47235 * 120.00379 * 2 1 3 33 33 H 1.08003 * 122.44721 * 0.02562 * 4 3 2 34 34 H 1.07999 * 124.52259 * 180.02562 * 5 4 3 35 35 H 1.09008 * 109.58107 * 246.15119 * 11 10 8 36 36 H 1.08991 * 109.58916 * 6.58084 * 11 10 8 37 37 H 1.08995 * 109.49928 * 174.58069 * 12 11 10 38 38 H 1.08997 * 109.49360 * 294.64865 * 12 11 10 39 39 H 0.97006 * 120.00268 * 95.00534 * 15 13 12 40 40 H 0.97007 * 119.99902 * 180.02562 * 19 18 16 41 41 H 1.09006 * 109.46840 * 300.11008 * 26 24 13 42 42 H 1.08996 * 109.46922 * 60.10638 * 26 24 13 43 43 H 1.08999 * 109.47617 * 180.11010 * 26 24 13 44 44 H 1.09001 * 109.58710 * 353.42647 * 27 10 8 45 45 H 1.09001 * 109.58054 * 113.70103 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1003 -1.1439 5 6 2.8033 3.3546 -0.9527 6 16 2.7845 3.7592 0.7048 7 6 2.1889 2.1622 1.1372 8 6 1.9006 1.7021 2.4987 9 8 2.3485 0.6403 2.8899 10 7 1.1393 2.4551 3.3173 11 6 0.6669 3.7797 2.8922 12 6 -0.8551 3.8366 3.0566 13 6 -1.2226 3.4704 4.4964 14 1 -0.7354 4.1629 5.1829 15 7 -2.6752 3.5559 4.6661 16 6 -3.2606 4.7582 4.9613 17 1 -2.6513 5.6433 5.0694 18 6 -4.6369 4.8391 5.1226 19 7 -5.3794 3.7603 4.9913 20 14 -5.4353 6.4791 5.5259 21 1 -5.7912 7.1795 4.2658 22 1 -6.6635 6.2477 6.3278 23 1 -4.4854 7.3136 6.3049 24 6 -0.7570 2.0442 4.7999 25 1 -1.2265 1.3535 4.0995 26 6 -1.1507 1.6685 6.2299 27 6 0.7657 1.9664 4.6516 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.3107 1.6545 -2.1254 34 1 3.1121 4.0233 -1.7425 35 1 1.1302 4.5486 3.5105 36 1 0.9278 3.9424 1.8465 37 1 -1.2074 4.8443 2.8363 38 1 -1.3217 3.1299 2.3705 39 1 -3.2225 2.7609 4.5694 40 1 -6.3413 3.8169 5.1036 41 1 -0.6819 2.3606 6.9295 42 1 -2.2342 1.7239 6.3349 43 1 -0.8164 0.6534 6.4440 44 1 1.0918 0.9328 4.7668 45 1 1.2391 2.5860 5.4133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036300718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:57 Heat of formation + Delta-G solvation = -17.400393 kcal Electronic energy + Delta-G solvation = -25831.590396 eV Core-core repulsion = 22360.787047 eV Total energy + Delta-G solvation = -3470.803349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45054 -39.58809 -38.55625 -36.20517 -34.51583 -33.77132 -33.09611 -31.15820 -30.49820 -27.77324 -26.87220 -25.90790 -24.45595 -23.30431 -23.13904 -22.03603 -20.89353 -19.23685 -19.16704 -18.91051 -17.53024 -16.96707 -16.73268 -16.18862 -15.97692 -15.67005 -15.48606 -15.03324 -15.00391 -14.79858 -14.68206 -14.27465 -14.10795 -13.88615 -13.66438 -13.32728 -13.21219 -13.04091 -12.84399 -12.82059 -12.67698 -12.49253 -12.40534 -12.15689 -12.10322 -11.96477 -11.86089 -11.74397 -11.63271 -11.17515 -11.09275 -10.85618 -9.85433 -9.64008 -9.31037 -8.94635 -7.89971 -5.17689 -0.35662 0.40905 0.95790 1.47160 1.49883 1.50449 1.58689 1.74125 2.10096 2.59033 3.42697 3.46391 3.77260 3.80730 3.87144 3.97331 4.04953 4.11571 4.25939 4.31884 4.33871 4.40201 4.45389 4.49236 4.63457 4.71727 4.74849 4.75473 4.79648 4.85199 4.93964 4.99465 5.02014 5.08146 5.16609 5.23893 5.28060 5.38402 5.42501 5.45319 5.49149 5.56423 5.60347 6.26993 6.31383 6.98193 7.37986 8.13330 8.37098 9.33634 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.003585 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.334653 B = 7808.374968 C = 8254.830679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 C -0.037 4.037 4 C -0.151 4.151 5 C -0.228 4.228 6 S 0.232 5.768 7 C -0.301 4.301 8 C 0.592 3.408 9 O -0.568 6.568 10 N -0.600 5.600 11 C 0.104 3.896 12 C -0.138 4.138 13 C 0.180 3.820 14 H 0.051 0.949 15 N -0.731 5.731 16 C -0.231 4.231 17 H 0.078 0.922 18 C -0.074 4.074 19 N -0.971 5.971 20 Si 0.967 3.033 21 H -0.289 1.289 22 H -0.301 1.301 23 H -0.268 1.268 24 C -0.099 4.099 25 H 0.051 0.949 26 C -0.129 4.129 27 C 0.127 3.873 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.167 0.833 34 H 0.200 0.800 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.111 -1.476 -11.873 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.052 4.052 4 C -0.182 4.182 5 C -0.365 4.365 6 S 0.501 5.499 7 C -0.420 4.420 8 C 0.380 3.620 9 O -0.449 6.449 10 N -0.331 5.331 11 C -0.020 4.020 12 C -0.179 4.179 13 C 0.072 3.928 14 H 0.069 0.931 15 N -0.369 5.369 16 C -0.363 4.363 17 H 0.096 0.904 18 C -0.266 4.266 19 N -0.622 5.622 20 Si 0.797 3.203 21 H -0.217 1.217 22 H -0.228 1.228 23 H -0.193 1.193 24 C -0.119 4.119 25 H 0.069 0.931 26 C -0.187 4.187 27 C 0.005 3.995 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.184 0.816 34 H 0.217 0.783 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.731 -0.468 -10.781 22.489 hybrid contribution -1.685 -0.831 -0.586 1.968 sum 18.046 -1.299 -11.368 21.367 Atomic orbital electron populations 1.21657 0.94397 1.02341 1.01268 1.20394 0.96081 0.91107 1.03778 1.19649 0.97091 0.97375 0.91087 1.20063 1.03765 0.94570 0.99771 1.25732 1.06967 1.01464 1.02380 1.83041 1.59615 1.08068 0.99213 1.24317 1.19108 1.01829 0.96795 1.17309 0.77774 0.83192 0.83694 1.90752 1.53795 1.24291 1.76094 1.48112 1.49852 1.18768 1.16331 1.22191 0.94541 0.83166 1.02081 1.22439 0.94268 1.01800 0.99381 1.20414 0.84154 0.94408 0.93859 0.93109 1.42575 1.02125 1.07917 1.84324 1.19606 0.90508 0.88599 1.37584 0.90373 1.25466 0.97098 1.00000 1.04083 1.69821 1.04538 1.28973 1.58878 0.85230 0.77759 0.79938 0.77397 1.21683 1.22772 1.19296 1.21599 0.94931 0.97222 0.98126 0.93066 1.21565 1.01198 1.01144 0.94749 1.21661 0.93737 1.01312 0.82799 0.91445 0.91172 0.95463 0.88221 0.91851 0.81563 0.78315 0.89012 0.88601 0.91180 0.93954 0.79789 0.94298 0.92109 0.93970 0.91656 0.89590 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.89 71.98 0.71 -2.46 16 2 C -0.07 -1.66 5.94 29.85 0.18 -1.49 16 3 C -0.04 -0.84 5.16 -20.42 -0.11 -0.94 16 4 C -0.15 -2.56 9.96 21.08 0.21 -2.35 16 5 C -0.23 -3.31 10.92 66.81 0.73 -2.58 16 6 S 0.23 4.18 20.22 -56.49 -1.14 3.04 16 7 C -0.30 -7.68 5.34 24.08 0.13 -7.55 16 8 C 0.59 18.20 7.17 86.42 0.62 18.82 16 9 O -0.57 -20.71 15.15 -4.35 -0.07 -20.78 16 10 N -0.60 -17.21 2.97 -823.72 -2.45 -19.66 16 11 C 0.10 2.69 5.94 86.36 0.51 3.21 16 12 C -0.14 -4.59 5.66 30.67 0.17 -4.42 16 13 C 0.18 6.73 2.19 45.03 0.10 6.83 16 14 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 15 N -0.73 -35.32 4.41 -322.77 -1.42 -36.75 16 16 C -0.23 -12.28 9.93 84.03 0.83 -11.44 16 17 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 19 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 20 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C -0.10 -3.26 2.46 -10.71 -0.03 -3.29 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 C -0.13 -4.15 9.03 71.98 0.65 -3.50 16 27 C 0.13 3.65 5.70 86.36 0.49 4.14 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 1.66 8.12 -2.39 -0.02 1.64 16 32 H 0.06 1.75 6.69 -2.39 -0.02 1.73 16 33 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.09 2.04 8.14 -2.38 -0.02 2.03 16 36 H 0.10 2.24 4.24 -12.87 -0.05 2.18 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.37 19.78 7.52 -92.70 -0.70 19.08 16 40 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 41 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.04 1.63 7.38 -2.39 -0.02 1.62 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.09 2.57 7.03 -2.39 -0.02 2.56 16 45 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -67.58 370.24 3.15 -64.44 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.25 Total: 31.65 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 5.68 Total: -10.73 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -3.59 Total: -114.87 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.07 Total: -20.78 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.14 Total: 3.04 kcal Total: -67.58 3.15 -64.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036300718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.036 kcal (2) G-P(sol) polarization free energy of solvation -67.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds