Wall clock time and date at job start Tue Mar 31 2020 13:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47245 * 2 1 4 4 C 1.53000 * 109.47179 * 119.99846 * 2 1 3 5 5 C 1.50700 * 109.47016 * 175.00104 * 4 2 1 6 6 C 1.33812 * 124.52658 * 89.99956 * 5 4 2 7 7 C 1.37472 * 115.10656 * 179.72878 * 6 5 4 8 8 C 1.36648 * 113.29275 * 0.45093 * 7 6 5 9 9 C 1.46591 * 125.45759 * 179.84016 * 8 7 6 10 10 O 1.21701 * 119.99910 * 359.72123 * 9 8 7 11 11 N 1.34771 * 119.99644 * 179.72222 * 9 8 7 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09007 * 112.96750 * 53.32018 * 13 12 11 15 15 C 1.53946 * 113.77378 * 184.99939 * 13 12 11 16 16 C 1.53945 * 86.29134 * 137.90550 * 15 13 12 17 17 N 1.47581 * 86.11961 * 336.39637 * 16 15 13 18 18 C 1.36929 * 134.49167 * 204.63911 * 17 16 15 19 19 H 1.08003 * 120.00188 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00102 * 0.02562 * 18 17 16 21 21 N 1.31623 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47369 * 119.99643 * 22 20 18 25 25 H 1.48500 * 109.47186 * 239.99558 * 22 20 18 26 26 S 1.70624 * 124.52339 * 269.97557 * 5 4 2 27 27 H 1.09006 * 109.46980 * 300.00411 * 1 2 3 28 28 H 1.08997 * 109.47219 * 59.99808 * 1 2 3 29 29 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47092 * 240.00316 * 2 1 3 31 31 H 1.08994 * 109.47198 * 59.99597 * 3 2 1 32 32 H 1.08997 * 109.47433 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46854 * 300.00354 * 3 2 1 34 34 H 1.08993 * 109.47322 * 54.99940 * 4 2 1 35 35 H 1.09001 * 109.47168 * 294.99739 * 4 2 1 36 36 H 1.08002 * 122.44957 * 359.97438 * 6 5 4 37 37 H 1.08005 * 123.35804 * 180.27291 * 7 6 5 38 38 H 0.96996 * 120.00772 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 40 40 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 41 41 H 1.09003 * 113.74151 * 252.25618 * 15 13 12 42 42 H 1.09006 * 113.73813 * 23.45283 * 15 13 12 43 43 H 1.08999 * 113.76275 * 90.69660 * 16 15 13 44 44 H 1.08993 * 113.76995 * 221.97658 * 16 15 13 45 45 H 0.96998 * 119.99367 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1889 6 6 4.3883 0.0834 1.6798 7 6 5.7214 -0.2140 1.5243 8 6 5.9390 -1.3989 0.8794 9 6 7.2532 -1.9703 0.5706 10 8 8.2657 -1.3755 0.8905 11 7 7.3402 -3.1541 -0.0675 12 6 8.6536 -3.7254 -0.3756 13 6 8.4719 -5.0629 -1.0959 14 1 7.8258 -4.9905 -1.9709 15 6 9.7917 -5.8103 -1.3593 16 6 9.0390 -7.0842 -0.9344 17 7 8.1343 -6.1824 -0.1953 18 6 7.3120 -6.3265 0.8900 19 1 6.7360 -5.4853 1.2466 20 6 7.2194 -7.5534 1.5327 21 7 7.9217 -8.5784 1.0984 22 14 6.0970 -7.7501 3.0129 23 1 5.4222 -6.4583 3.2976 24 1 5.0762 -8.7895 2.7254 25 1 6.9009 -8.1588 4.1928 26 16 4.3901 -2.1322 0.4859 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6054 -1.7197 1.2952 35 1 1.7517 -0.1582 2.1370 36 1 4.0490 0.9859 2.1665 37 1 6.5176 0.4264 1.8742 38 1 6.5333 -3.6283 -0.3222 39 1 9.2069 -3.0392 -1.0169 40 1 9.2071 -3.8838 0.5499 41 1 10.0956 -5.8086 -2.4061 42 1 10.5982 -5.5286 -0.6823 43 1 8.5588 -7.6071 -1.7615 44 1 9.6221 -7.7460 -0.2941 45 1 7.8567 -9.4358 1.5473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038350271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:02 Heat of formation + Delta-G solvation = 29.211970 kcal Electronic energy + Delta-G solvation = -24568.861070 eV Core-core repulsion = 21100.078985 eV Total energy + Delta-G solvation = -3468.782086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.52620 -38.44871 -37.81413 -36.01567 -34.08530 -32.19448 -30.88205 -28.44586 -27.86420 -27.48253 -26.43585 -23.74594 -23.37365 -22.34772 -21.01213 -20.46709 -19.50817 -18.90884 -17.87607 -16.63159 -16.24687 -15.50805 -15.33609 -15.21776 -14.92775 -14.74289 -14.49806 -14.06050 -13.76309 -13.38246 -13.27495 -13.02472 -12.86661 -12.58103 -12.52179 -12.28006 -11.90717 -11.81373 -11.44894 -11.27673 -11.15138 -11.12144 -11.04178 -11.02406 -10.81369 -10.74994 -10.53362 -10.06326 -9.78503 -9.73338 -9.40524 -8.81569 -8.79791 -8.60231 -8.49632 -6.90209 -5.77152 -3.09640 0.53357 1.45572 1.89143 2.40295 3.37217 3.40763 3.43907 3.45551 3.52087 4.39124 4.42650 4.54412 4.61648 4.92766 4.98664 5.14755 5.18910 5.27594 5.32337 5.35268 5.39017 5.44879 5.52235 5.58308 5.60513 5.67488 5.69404 5.82986 5.90412 5.93845 5.99581 6.03366 6.06447 6.15213 6.31099 6.34470 6.39594 6.60964 6.68211 6.83275 7.24365 7.40114 7.59053 7.80051 7.97871 8.45055 9.03926 9.70549 10.58426 11.39584 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.003500 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.313554 B = 7997.768848 C = 9114.878545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.047 4.047 5 C -0.195 4.195 6 C -0.152 4.152 7 C -0.060 4.060 8 C -0.260 4.260 9 C 0.585 3.415 10 O -0.541 6.541 11 N -0.709 5.709 12 C 0.124 3.876 13 C 0.124 3.876 14 H 0.050 0.950 15 C -0.155 4.155 16 C 0.159 3.841 17 N -0.602 5.602 18 C -0.219 4.219 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 S 0.210 5.790 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.400 0.600 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.027 0.973 44 H 0.074 0.926 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 16.962 -4.114 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.087 4.087 5 C -0.315 4.315 6 C -0.183 4.183 7 C -0.093 4.093 8 C -0.380 4.380 9 C 0.371 3.629 10 O -0.421 6.421 11 N -0.358 5.358 12 C -0.001 4.001 13 C 0.017 3.983 14 H 0.067 0.933 15 C -0.194 4.194 16 C 0.034 3.966 17 N -0.329 5.329 18 C -0.347 4.347 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 S 0.479 5.521 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.234 0.766 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.013 15.814 -4.353 19.757 hybrid contribution -0.735 0.862 1.488 1.870 sum -11.748 16.676 -2.865 20.599 Atomic orbital electron populations 1.21845 0.94759 1.01946 1.01940 1.21136 0.95668 0.96767 0.97609 1.21911 1.01877 0.95432 1.01556 1.20300 0.87432 1.01721 0.99206 1.24209 1.00901 1.00085 1.06335 1.19894 0.91883 1.01384 1.05134 1.20695 0.97023 0.95013 0.96572 1.24703 0.97090 1.02555 1.13673 1.16958 0.86862 0.81109 0.77977 1.90790 1.36003 1.61403 1.53859 1.45863 1.10650 1.20596 1.58723 1.21823 0.83420 0.94194 1.00620 1.22521 0.94889 0.88319 0.92586 0.93284 1.23771 0.96467 0.99657 0.99493 1.22194 0.89397 0.91877 0.93137 1.46083 1.51335 1.06238 1.29213 1.18982 1.17868 0.95675 1.02129 0.90392 1.24744 1.00308 0.95746 0.99467 1.69829 1.43713 1.01147 1.41907 0.86154 0.80104 0.77618 0.82608 1.20420 1.21731 1.21696 1.83263 0.94844 1.20086 1.53955 0.92573 0.92448 0.92509 0.90894 0.92721 0.91957 0.92797 0.90503 0.89864 0.84172 0.83191 0.76584 0.91873 0.90675 0.92757 0.90444 0.95554 0.90787 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.70 2.91 -90.62 -0.26 -0.96 16 3 C -0.15 -1.10 8.87 37.16 0.33 -0.77 16 4 C -0.05 -0.40 5.12 -27.88 -0.14 -0.54 16 5 C -0.20 -2.12 5.05 -35.86 -0.18 -2.30 16 6 C -0.15 -1.67 8.50 -41.41 -0.35 -2.02 16 7 C -0.06 -0.80 10.01 -40.44 -0.40 -1.21 16 8 C -0.26 -3.97 6.45 -36.79 -0.24 -4.20 16 9 C 0.59 10.68 7.78 -12.89 -0.10 10.58 16 10 O -0.54 -11.32 16.84 5.19 0.09 -11.23 16 11 N -0.71 -12.70 5.52 -61.64 -0.34 -13.04 16 12 C 0.12 2.29 5.54 -4.04 -0.02 2.27 16 13 C 0.12 2.41 4.33 -66.86 -0.29 2.12 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.15 -2.82 7.86 -25.80 -0.20 -3.03 16 16 C 0.16 3.64 7.51 -2.97 -0.02 3.62 16 17 N -0.60 -14.70 3.57 -170.73 -0.61 -15.31 16 18 C -0.22 -5.91 10.51 -15.06 -0.16 -6.06 16 19 H 0.08 2.05 7.80 -52.48 -0.41 1.64 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -26.92 11.39 55.49 0.63 -26.29 16 22 Si 0.90 22.12 29.55 -169.99 -5.02 17.09 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 S 0.21 2.69 22.10 -107.50 -2.38 0.31 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.52 6.38 -51.93 -0.33 0.19 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.40 6.87 7.59 -40.82 -0.31 6.56 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -31.69 382.74 -10.99 -42.68 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.32 Total: 3.41 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.80 Total: -3.39 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.32 Total: -54.64 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.38 Total: 0.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.69 -10.99 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038350271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.888 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds