Wall clock time and date at job start Tue Mar 31 2020 13:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47245 * 2 1 4 4 C 1.53000 * 109.47179 * 119.99846 * 2 1 3 5 5 C 1.50700 * 109.47016 * 175.00104 * 4 2 1 6 6 C 1.33812 * 124.52658 * 89.99956 * 5 4 2 7 7 C 1.37472 * 115.10656 * 179.72878 * 6 5 4 8 8 C 1.36648 * 113.29275 * 0.45093 * 7 6 5 9 9 C 1.46591 * 125.45759 * 179.84016 * 8 7 6 10 10 O 1.21701 * 119.99910 * 359.72123 * 9 8 7 11 11 N 1.34771 * 119.99644 * 179.72222 * 9 8 7 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09007 * 112.96750 * 53.32018 * 13 12 11 15 15 C 1.53946 * 113.77378 * 184.99939 * 13 12 11 16 16 C 1.53945 * 86.29134 * 137.90550 * 15 13 12 17 17 N 1.47581 * 86.11961 * 336.39637 * 16 15 13 18 18 C 1.36929 * 134.49167 * 204.63911 * 17 16 15 19 19 H 1.08003 * 120.00188 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00102 * 0.02562 * 18 17 16 21 21 N 1.31623 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47369 * 119.99643 * 22 20 18 25 25 H 1.48500 * 109.47186 * 239.99558 * 22 20 18 26 26 S 1.70624 * 124.52339 * 269.97557 * 5 4 2 27 27 H 1.09006 * 109.46980 * 300.00411 * 1 2 3 28 28 H 1.08997 * 109.47219 * 59.99808 * 1 2 3 29 29 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47092 * 240.00316 * 2 1 3 31 31 H 1.08994 * 109.47198 * 59.99597 * 3 2 1 32 32 H 1.08997 * 109.47433 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46854 * 300.00354 * 3 2 1 34 34 H 1.08993 * 109.47322 * 54.99940 * 4 2 1 35 35 H 1.09001 * 109.47168 * 294.99739 * 4 2 1 36 36 H 1.08002 * 122.44957 * 359.97438 * 6 5 4 37 37 H 1.08005 * 123.35804 * 180.27291 * 7 6 5 38 38 H 0.96996 * 120.00772 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 40 40 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 41 41 H 1.09003 * 113.74151 * 252.25618 * 15 13 12 42 42 H 1.09006 * 113.73813 * 23.45283 * 15 13 12 43 43 H 1.08999 * 113.76275 * 90.69660 * 16 15 13 44 44 H 1.08993 * 113.76995 * 221.97658 * 16 15 13 45 45 H 0.96998 * 119.99367 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1889 6 6 4.3883 0.0834 1.6798 7 6 5.7214 -0.2140 1.5243 8 6 5.9390 -1.3989 0.8794 9 6 7.2532 -1.9703 0.5706 10 8 8.2657 -1.3755 0.8905 11 7 7.3402 -3.1541 -0.0675 12 6 8.6536 -3.7254 -0.3756 13 6 8.4719 -5.0629 -1.0959 14 1 7.8258 -4.9905 -1.9709 15 6 9.7917 -5.8103 -1.3593 16 6 9.0390 -7.0842 -0.9344 17 7 8.1343 -6.1824 -0.1953 18 6 7.3120 -6.3265 0.8900 19 1 6.7360 -5.4853 1.2466 20 6 7.2194 -7.5534 1.5327 21 7 7.9217 -8.5784 1.0984 22 14 6.0970 -7.7501 3.0129 23 1 5.4222 -6.4583 3.2976 24 1 5.0762 -8.7895 2.7254 25 1 6.9009 -8.1588 4.1928 26 16 4.3901 -2.1322 0.4859 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6054 -1.7197 1.2952 35 1 1.7517 -0.1582 2.1370 36 1 4.0490 0.9859 2.1665 37 1 6.5176 0.4264 1.8742 38 1 6.5333 -3.6283 -0.3222 39 1 9.2069 -3.0392 -1.0169 40 1 9.2071 -3.8838 0.5499 41 1 10.0956 -5.8086 -2.4061 42 1 10.5982 -5.5286 -0.6823 43 1 8.5588 -7.6071 -1.7615 44 1 9.6221 -7.7460 -0.2941 45 1 7.8567 -9.4358 1.5473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038350271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:02 Heat of formation + Delta-G solvation = 10.988371 kcal Electronic energy + Delta-G solvation = -24569.651305 eV Core-core repulsion = 21100.078985 eV Total energy + Delta-G solvation = -3469.572320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91879 -39.71741 -39.12440 -36.78006 -35.60215 -34.21704 -31.82234 -29.98470 -29.58689 -28.05909 -27.47500 -25.29995 -24.75081 -23.79095 -22.32014 -21.15034 -20.99852 -20.28580 -19.10822 -18.37195 -17.41571 -17.13094 -16.75534 -16.36610 -16.14168 -15.76452 -15.71120 -15.36022 -15.16406 -14.86826 -14.65431 -14.05206 -13.77236 -13.68146 -13.44992 -13.26885 -13.12308 -12.98343 -12.97272 -12.72490 -12.58828 -12.54407 -12.28744 -12.04153 -11.85950 -11.76550 -11.73034 -11.54138 -11.52734 -11.44146 -11.04787 -10.84419 -10.20725 -9.63453 -9.54997 -8.88884 -7.87464 -5.18999 -0.51705 0.44051 0.91011 1.38100 1.42057 1.43813 1.52348 2.07343 2.19084 2.46701 3.31806 3.37789 3.64793 3.77652 3.94695 3.98601 4.04046 4.10629 4.21954 4.32559 4.37932 4.50677 4.59456 4.68827 4.69990 4.73232 4.85147 4.85883 4.93388 5.01585 5.05810 5.06523 5.07536 5.11568 5.17283 5.29868 5.32075 5.34870 5.40786 5.47044 5.49036 5.61160 5.74032 5.98111 6.39685 6.95691 7.05188 7.64845 8.59444 9.29394 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.003500 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.313554 B = 7997.768848 C = 9114.878545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.049 4.049 5 C -0.175 4.175 6 C -0.155 4.155 7 C -0.050 4.050 8 C -0.301 4.301 9 C 0.584 3.416 10 O -0.578 6.578 11 N -0.709 5.709 12 C 0.132 3.868 13 C 0.130 3.870 14 H 0.071 0.929 15 C -0.129 4.129 16 C 0.151 3.849 17 N -0.630 5.630 18 C -0.213 4.213 19 H 0.081 0.919 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.290 1.290 25 H -0.298 1.298 26 S 0.205 5.795 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.170 0.830 37 H 0.151 0.849 38 H 0.403 0.597 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.039 0.961 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 19.088 -4.414 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.088 4.088 5 C -0.295 4.295 6 C -0.184 4.184 7 C -0.084 4.084 8 C -0.421 4.421 9 C 0.372 3.628 10 O -0.460 6.460 11 N -0.359 5.359 12 C 0.007 3.993 13 C 0.024 3.976 14 H 0.089 0.911 15 C -0.167 4.167 16 C 0.025 3.975 17 N -0.356 5.356 18 C -0.342 4.342 19 H 0.098 0.902 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.217 1.217 25 H -0.225 1.225 26 S 0.474 5.526 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.187 0.813 37 H 0.169 0.831 38 H 0.238 0.762 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.041 0.959 44 H 0.058 0.942 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.995 17.966 -4.683 22.662 hybrid contribution -0.185 0.303 1.539 1.580 sum -13.180 18.269 -3.143 22.745 Atomic orbital electron populations 1.21824 0.93616 1.02212 1.02603 1.21117 0.96570 0.96687 0.96615 1.21909 1.01093 0.95358 1.02373 1.20464 0.85398 1.02502 1.00450 1.24591 1.02177 0.98596 1.04109 1.20092 0.90643 1.02431 1.05254 1.20943 0.98314 0.94098 0.95048 1.24487 0.96724 1.04115 1.16779 1.17343 0.87708 0.80713 0.77082 1.90752 1.37567 1.62306 1.55409 1.45848 1.10468 1.20690 1.58846 1.21644 0.83795 0.94350 0.99486 1.22696 0.95519 0.87363 0.92006 0.91142 1.23562 0.95595 0.95666 1.01920 1.22168 0.89747 0.93135 0.92401 1.46428 1.51076 1.08511 1.29598 1.19285 1.16900 0.95392 1.02579 0.90173 1.25468 1.02331 0.95926 1.02307 1.70000 1.45638 1.01264 1.43284 0.85247 0.78396 0.77789 0.79471 1.19144 1.21715 1.22514 1.83242 0.93879 1.21042 1.54430 0.91697 0.92046 0.92474 0.91948 0.91587 0.93108 0.92411 0.90109 0.88000 0.81304 0.83141 0.76212 0.89698 0.93632 0.88591 0.90282 0.95857 0.94211 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.19 71.98 0.66 -0.77 16 2 C -0.09 -1.13 2.91 -10.79 -0.03 -1.16 16 3 C -0.15 -1.78 8.87 71.98 0.64 -1.15 16 4 C -0.05 -0.67 5.12 29.85 0.15 -0.52 16 5 C -0.17 -3.37 5.05 24.68 0.12 -3.24 16 6 C -0.15 -3.01 8.50 21.08 0.18 -2.83 16 7 C -0.05 -1.27 10.01 21.72 0.22 -1.06 16 8 C -0.30 -9.06 6.45 24.08 0.16 -8.91 16 9 C 0.58 21.39 7.78 86.42 0.67 22.06 16 10 O -0.58 -24.53 16.84 -4.35 -0.07 -24.60 16 11 N -0.71 -25.23 5.52 -467.16 -2.58 -27.81 16 12 C 0.13 4.78 5.54 86.38 0.48 5.26 16 13 C 0.13 4.86 4.33 45.09 0.20 5.05 16 14 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 15 C -0.13 -4.46 7.86 31.25 0.25 -4.22 16 16 C 0.15 6.93 7.51 86.48 0.65 7.58 16 17 N -0.63 -30.78 3.57 -694.07 -2.48 -33.26 16 18 C -0.21 -11.58 10.51 84.04 0.88 -10.70 16 19 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 20 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.95 -57.38 11.39 21.65 0.25 -57.14 16 22 Si 0.96 46.13 29.55 68.60 2.03 48.16 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 26 S 0.21 5.02 22.10 -56.49 -1.25 3.77 16 27 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.72 6.38 -2.39 -0.02 0.71 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.40 13.70 7.59 -92.71 -0.70 12.99 16 39 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.08 2.73 8.10 -2.38 -0.02 2.71 16 43 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 44 H 0.04 2.09 7.16 -2.39 -0.02 2.07 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -70.00 382.74 1.85 -68.15 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.27 Total: 20.70 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.69 Total: 2.04 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -4.81 Total: -118.21 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.07 Total: -24.60 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.25 Total: 3.77 kcal Total: -70.00 1.85 -68.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038350271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.137 kcal (2) G-P(sol) polarization free energy of solvation -70.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds