Wall clock time and date at job start Tue Mar 31 2020 13:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46971 * 2 1 4 4 C 1.50706 * 109.47028 * 180.02562 * 3 2 1 5 5 C 1.37478 * 122.44424 * 265.02203 * 4 3 2 6 6 C 1.36651 * 113.29119 * 179.97438 * 5 4 3 7 7 C 1.46587 * 125.45220 * 179.97438 * 6 5 4 8 8 O 1.21702 * 120.00133 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99339 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99365 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46808 * 179.97438 * 10 9 7 12 12 H 1.09004 * 112.73875 * 56.24171 * 11 10 9 13 13 C 1.53499 * 113.47029 * 187.06026 * 11 10 9 14 14 C 1.53492 * 83.34580 * 140.85024 * 13 11 10 15 15 N 1.47067 * 113.47106 * 285.49642 * 11 10 9 16 16 C 1.36935 * 136.05326 * 38.05935 * 15 11 10 17 17 H 1.08002 * 120.00578 * 0.02562 * 16 15 11 18 18 C 1.38821 * 119.99536 * 180.02562 * 16 15 11 19 19 N 1.31610 * 120.00406 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99692 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46719 * 90.00336 * 20 18 16 22 22 H 1.48499 * 109.47139 * 210.00117 * 20 18 16 23 23 H 1.48494 * 109.47072 * 330.00300 * 20 18 16 24 24 S 1.75826 * 109.08553 * 0.02562 * 6 5 4 25 25 C 1.33808 * 122.45004 * 84.73163 * 4 3 2 26 26 C 1.50703 * 124.52442 * 0.02636 * 25 4 3 27 27 H 1.09002 * 109.47711 * 60.00066 * 1 2 3 28 28 H 1.09001 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47096 * 299.99977 * 1 2 3 30 30 H 1.09004 * 109.47172 * 240.00531 * 2 1 3 31 31 H 1.08998 * 109.47218 * 119.99935 * 2 1 3 32 32 H 1.08996 * 109.47547 * 60.00285 * 3 2 1 33 33 H 1.08998 * 109.47097 * 300.00010 * 3 2 1 34 34 H 1.07993 * 123.35504 * 0.02562 * 5 4 3 35 35 H 0.96993 * 120.00719 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47431 * 299.99622 * 10 9 7 37 37 H 1.08995 * 109.47326 * 60.00059 * 10 9 7 38 38 H 1.09000 * 114.20988 * 254.44026 * 13 11 10 39 39 H 1.09007 * 114.20518 * 27.25891 * 13 11 10 40 40 H 1.09005 * 113.46446 * 219.15353 * 14 13 11 41 41 H 1.08993 * 113.47167 * 88.71845 * 14 13 11 42 42 H 0.96996 * 120.00929 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.47350 * 89.99771 * 26 25 4 44 44 H 1.09004 * 109.46550 * 209.99791 * 26 25 4 45 45 H 1.08995 * 109.46886 * 329.99279 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2850 1.5430 1.1549 6 6 5.6340 1.5237 0.9378 7 6 6.6638 1.6145 1.9771 8 8 6.3413 1.7175 3.1460 9 7 7.9679 1.5849 1.6378 10 6 8.9971 1.6762 2.6764 11 6 10.3819 1.6190 2.0284 12 1 10.5259 2.3914 1.2729 13 6 11.5293 1.5346 3.0445 14 6 12.1288 0.5634 2.0182 15 7 10.7587 0.2735 1.5694 16 6 10.1161 -0.7840 0.9830 17 1 9.0622 -0.7174 0.7565 18 6 10.8194 -1.9418 0.6798 19 7 12.1036 -2.0233 0.9563 20 14 9.9430 -3.3843 -0.1208 21 1 10.0160 -3.2498 -1.5979 22 1 10.5959 -4.6521 0.2937 23 1 8.5206 -3.3976 0.3054 24 16 5.9366 1.3738 -0.7877 25 6 4.2645 1.3390 -1.1253 26 6 3.6744 1.2124 -2.5063 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8427 1.6279 2.1364 35 1 8.2250 1.5032 0.7061 36 1 8.8866 2.6169 3.2157 37 1 8.8868 0.8439 3.3714 38 1 12.0902 2.4616 3.1634 39 1 11.2543 1.0703 3.9917 40 1 12.6276 -0.2935 2.4712 41 1 12.7390 1.0547 1.2604 42 1 12.5950 -2.8324 0.7447 43 1 3.5325 2.2052 -2.9331 44 1 4.3510 0.6381 -3.1391 45 1 2.7132 0.7023 -2.4452 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039004689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:19 Heat of formation + Delta-G solvation = 30.565290 kcal Electronic energy + Delta-G solvation = -24654.370274 eV Core-core repulsion = 21185.646873 eV Total energy + Delta-G solvation = -3468.723401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62862 -38.73497 -37.95116 -34.39091 -34.06034 -32.26304 -32.06240 -29.00558 -28.08403 -27.71280 -25.65490 -23.55128 -23.47943 -22.22901 -21.53853 -20.33678 -19.32062 -18.68109 -17.84780 -16.74414 -16.35769 -15.47157 -15.33654 -14.97830 -14.79270 -14.72711 -14.26298 -13.96485 -13.68235 -13.57303 -13.32058 -13.17848 -12.95459 -12.84085 -12.31467 -12.13776 -11.97588 -11.83114 -11.55759 -11.47947 -11.29708 -11.13305 -11.00008 -10.90872 -10.77217 -10.68715 -10.58923 -10.04449 -9.84653 -9.76920 -9.26094 -8.82757 -8.75356 -8.54070 -8.37440 -6.91985 -5.78570 -3.11300 0.54946 1.48046 1.90367 2.34473 3.36533 3.40960 3.43107 3.44330 3.52745 4.41904 4.61124 4.68809 4.79806 4.90991 4.98511 5.07179 5.20355 5.27514 5.30121 5.37835 5.38686 5.45285 5.54688 5.58352 5.60251 5.68591 5.70570 5.78897 5.87563 5.89784 5.96275 6.08412 6.10274 6.27673 6.32519 6.38444 6.41545 6.58092 6.68859 6.83366 7.21012 7.37550 7.56286 7.81771 7.95776 8.46409 9.01234 9.68485 10.60891 11.38571 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003576 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.057379 B = 7828.163161 C = 8952.058135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.056 4.056 4 C -0.121 4.121 5 C -0.054 4.054 6 C -0.258 4.258 7 C 0.586 3.414 8 O -0.541 6.541 9 N -0.708 5.708 10 C 0.122 3.878 11 C 0.126 3.874 12 H 0.049 0.951 13 C -0.160 4.160 14 C 0.152 3.848 15 N -0.602 5.602 16 C -0.215 4.215 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.905 3.095 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 S 0.208 5.792 25 C -0.203 4.203 26 C -0.085 4.085 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.400 0.600 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.137 9.124 -4.829 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.096 4.096 4 C -0.134 4.134 5 C -0.087 4.087 6 C -0.378 4.378 7 C 0.371 3.629 8 O -0.421 6.421 9 N -0.358 5.358 10 C -0.002 4.002 11 C 0.018 3.982 12 H 0.066 0.934 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.342 4.342 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.735 3.265 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 S 0.478 5.522 25 C -0.323 4.323 26 C -0.143 4.143 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.167 0.833 35 H 0.235 0.765 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.000 8.759 -5.043 18.925 hybrid contribution -1.492 -0.843 -0.183 1.724 sum -17.492 7.916 -5.226 19.899 Atomic orbital electron populations 1.21784 0.95729 1.01678 1.01737 1.21530 0.95481 0.96283 1.02632 1.20305 0.89256 0.97305 1.02734 1.18593 0.97251 1.06177 0.91358 1.20547 0.90927 0.97561 0.99630 1.24622 0.98110 1.17858 0.97245 1.16948 0.81889 0.76870 0.87174 1.90786 1.81858 1.51060 1.18411 1.45859 1.05112 1.73256 1.11542 1.21868 0.86723 1.01270 0.90361 1.22437 0.91335 0.90096 0.94325 0.93414 1.23661 0.97996 0.99823 0.98444 1.22029 0.88588 0.95130 0.91651 1.45683 1.06168 1.09070 1.71825 1.18842 0.92495 0.90232 1.32627 0.90288 1.24756 0.95825 0.97997 1.01634 1.69816 1.06789 1.27642 1.52204 0.86217 0.78740 0.82351 0.79145 1.21514 1.21556 1.20549 1.83266 1.02739 1.67269 0.98937 1.24026 0.98685 1.09242 1.00308 1.20388 1.01127 1.02687 0.90107 0.92811 0.92714 0.92673 0.91866 0.91652 0.90938 0.91076 0.83257 0.76500 0.91977 0.90808 0.92275 0.90138 0.90933 0.95699 0.93657 0.90623 0.91088 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.04 5.85 -26.73 -0.16 -1.19 16 3 C -0.06 -0.50 4.82 -27.88 -0.13 -0.64 16 4 C -0.12 -1.41 5.04 -106.45 -0.54 -1.94 16 5 C -0.05 -0.75 9.78 -40.43 -0.40 -1.14 16 6 C -0.26 -4.05 6.45 -36.79 -0.24 -4.29 16 7 C 0.59 10.85 7.78 -12.89 -0.10 10.75 16 8 O -0.54 -11.45 16.84 5.19 0.09 -11.36 16 9 N -0.71 -12.90 5.33 -61.65 -0.33 -13.23 16 10 C 0.12 2.27 5.52 -4.04 -0.02 2.25 16 11 C 0.13 2.45 4.10 -72.39 -0.30 2.15 16 12 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 13 C -0.16 -2.92 8.03 -26.22 -0.21 -3.13 16 14 C 0.15 3.46 7.39 -8.51 -0.06 3.40 16 15 N -0.60 -14.72 3.65 -176.99 -0.65 -15.36 16 16 C -0.21 -5.79 10.55 -15.06 -0.16 -5.95 16 17 H 0.08 2.06 7.50 -52.49 -0.39 1.67 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -26.92 11.51 55.49 0.64 -26.28 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 S 0.21 2.76 22.10 -107.50 -2.38 0.38 16 25 C -0.20 -2.31 6.28 -35.86 -0.23 -2.54 16 26 C -0.08 -0.70 9.71 36.01 0.35 -0.35 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.06 0.55 7.21 -51.93 -0.37 0.17 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.07 0.54 7.47 -51.93 -0.39 0.16 16 34 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.40 7.05 7.49 -40.82 -0.31 6.75 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 40 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.57 6.37 -51.93 -0.33 0.23 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -31.88 382.34 -11.02 -42.89 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.21 Total: 3.70 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.91 Total: -3.54 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.34 Total: -54.87 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.38 Total: 0.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.88 -11.02 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039004689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.459 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds