Wall clock time and date at job start Tue Mar 31 2020 13:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46971 * 2 1 4 4 C 1.50706 * 109.47028 * 180.02562 * 3 2 1 5 5 C 1.37478 * 122.44424 * 265.02203 * 4 3 2 6 6 C 1.36651 * 113.29119 * 179.97438 * 5 4 3 7 7 C 1.46587 * 125.45220 * 179.97438 * 6 5 4 8 8 O 1.21702 * 120.00133 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99339 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99365 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46808 * 179.97438 * 10 9 7 12 12 H 1.09004 * 112.73875 * 56.24171 * 11 10 9 13 13 C 1.53499 * 113.47029 * 187.06026 * 11 10 9 14 14 C 1.53492 * 83.34580 * 140.85024 * 13 11 10 15 15 N 1.47067 * 113.47106 * 285.49642 * 11 10 9 16 16 C 1.36935 * 136.05326 * 38.05935 * 15 11 10 17 17 H 1.08002 * 120.00578 * 0.02562 * 16 15 11 18 18 C 1.38821 * 119.99536 * 180.02562 * 16 15 11 19 19 N 1.31610 * 120.00406 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99692 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46719 * 90.00336 * 20 18 16 22 22 H 1.48499 * 109.47139 * 210.00117 * 20 18 16 23 23 H 1.48494 * 109.47072 * 330.00300 * 20 18 16 24 24 S 1.75826 * 109.08553 * 0.02562 * 6 5 4 25 25 C 1.33808 * 122.45004 * 84.73163 * 4 3 2 26 26 C 1.50703 * 124.52442 * 0.02636 * 25 4 3 27 27 H 1.09002 * 109.47711 * 60.00066 * 1 2 3 28 28 H 1.09001 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47096 * 299.99977 * 1 2 3 30 30 H 1.09004 * 109.47172 * 240.00531 * 2 1 3 31 31 H 1.08998 * 109.47218 * 119.99935 * 2 1 3 32 32 H 1.08996 * 109.47547 * 60.00285 * 3 2 1 33 33 H 1.08998 * 109.47097 * 300.00010 * 3 2 1 34 34 H 1.07993 * 123.35504 * 0.02562 * 5 4 3 35 35 H 0.96993 * 120.00719 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47431 * 299.99622 * 10 9 7 37 37 H 1.08995 * 109.47326 * 60.00059 * 10 9 7 38 38 H 1.09000 * 114.20988 * 254.44026 * 13 11 10 39 39 H 1.09007 * 114.20518 * 27.25891 * 13 11 10 40 40 H 1.09005 * 113.46446 * 219.15353 * 14 13 11 41 41 H 1.08993 * 113.47167 * 88.71845 * 14 13 11 42 42 H 0.96996 * 120.00929 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.47350 * 89.99771 * 26 25 4 44 44 H 1.09004 * 109.46550 * 209.99791 * 26 25 4 45 45 H 1.08995 * 109.46886 * 329.99279 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2850 1.5430 1.1549 6 6 5.6340 1.5237 0.9378 7 6 6.6638 1.6145 1.9771 8 8 6.3413 1.7175 3.1460 9 7 7.9679 1.5849 1.6378 10 6 8.9971 1.6762 2.6764 11 6 10.3819 1.6190 2.0284 12 1 10.5259 2.3914 1.2729 13 6 11.5293 1.5346 3.0445 14 6 12.1288 0.5634 2.0182 15 7 10.7587 0.2735 1.5694 16 6 10.1161 -0.7840 0.9830 17 1 9.0622 -0.7174 0.7565 18 6 10.8194 -1.9418 0.6798 19 7 12.1036 -2.0233 0.9563 20 14 9.9430 -3.3843 -0.1208 21 1 10.0160 -3.2498 -1.5979 22 1 10.5959 -4.6521 0.2937 23 1 8.5206 -3.3976 0.3054 24 16 5.9366 1.3738 -0.7877 25 6 4.2645 1.3390 -1.1253 26 6 3.6744 1.2124 -2.5063 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8427 1.6279 2.1364 35 1 8.2250 1.5032 0.7061 36 1 8.8866 2.6169 3.2157 37 1 8.8868 0.8439 3.3714 38 1 12.0902 2.4616 3.1634 39 1 11.2543 1.0703 3.9917 40 1 12.6276 -0.2935 2.4712 41 1 12.7390 1.0547 1.2604 42 1 12.5950 -2.8324 0.7447 43 1 3.5325 2.2052 -2.9331 44 1 4.3510 0.6381 -3.1391 45 1 2.7132 0.7023 -2.4452 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039004689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:18 Heat of formation + Delta-G solvation = 12.086936 kcal Electronic energy + Delta-G solvation = -24655.171556 eV Core-core repulsion = 21185.646873 eV Total energy + Delta-G solvation = -3469.524683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00465 -40.00036 -39.39741 -35.61615 -35.11910 -34.26584 -32.98121 -30.20492 -29.84286 -28.93459 -26.61793 -25.40916 -24.65963 -23.44705 -22.59986 -21.62470 -20.97837 -19.79664 -19.08908 -18.42432 -17.58169 -17.14585 -16.80362 -16.32374 -16.02943 -15.72282 -15.68745 -15.20072 -15.09600 -14.79257 -14.54187 -14.33818 -13.89910 -13.70843 -13.63487 -13.38488 -13.00506 -12.98780 -12.84302 -12.71938 -12.70049 -12.60330 -12.38185 -12.33151 -11.99009 -11.87973 -11.69229 -11.64648 -11.46296 -11.37390 -10.96746 -10.83958 -10.19821 -9.63784 -9.38462 -8.90726 -7.88916 -5.20648 -0.53540 0.43487 0.88931 1.29982 1.41939 1.43651 1.51314 2.04897 2.16301 2.45693 3.32693 3.41484 3.70694 3.80683 3.91951 4.02401 4.09160 4.11870 4.26056 4.29020 4.31017 4.53493 4.59101 4.62932 4.66879 4.70933 4.74836 4.85126 4.88213 4.95106 5.02041 5.04563 5.06265 5.08217 5.17140 5.22733 5.30165 5.33729 5.42377 5.49314 5.54087 5.57634 5.72631 5.96162 6.38441 6.92762 7.03620 7.62556 8.62227 9.28544 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003576 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.057379 B = 7828.163161 C = 8952.058135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.052 4.052 4 C -0.130 4.130 5 C -0.046 4.046 6 C -0.299 4.299 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.709 5.709 10 C 0.129 3.871 11 C 0.131 3.869 12 H 0.070 0.930 13 C -0.133 4.133 14 C 0.144 3.856 15 N -0.630 5.630 16 C -0.209 4.209 17 H 0.082 0.918 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.963 3.037 21 H -0.281 1.281 22 H -0.296 1.296 23 H -0.275 1.275 24 S 0.205 5.795 25 C -0.184 4.184 26 C -0.088 4.088 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.024 0.976 42 H 0.246 0.754 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.397 10.403 -6.353 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.092 4.092 4 C -0.142 4.142 5 C -0.080 4.080 6 C -0.419 4.419 7 C 0.372 3.628 8 O -0.461 6.461 9 N -0.358 5.358 10 C 0.005 3.995 11 C 0.025 3.975 12 H 0.087 0.913 13 C -0.171 4.171 14 C 0.018 3.982 15 N -0.356 5.356 16 C -0.337 4.337 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.792 3.208 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.200 1.200 24 S 0.475 5.525 25 C -0.304 4.304 26 C -0.146 4.146 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.164 0.836 35 H 0.238 0.762 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.273 10.073 -6.576 21.877 hybrid contribution -0.863 -1.171 0.264 1.478 sum -19.136 8.902 -6.312 22.029 Atomic orbital electron populations 1.21758 0.94348 1.02036 1.02476 1.21510 0.96659 0.95836 1.01817 1.20368 0.87061 0.97759 1.03992 1.18813 0.98766 1.06162 0.90452 1.20773 0.90650 0.96061 1.00526 1.24404 0.97960 1.21488 0.98031 1.17320 0.82274 0.75840 0.87391 1.90748 1.82385 1.52905 1.20016 1.45848 1.05167 1.73254 1.11505 1.21707 0.86545 1.01176 0.90064 1.22593 0.92115 0.88004 0.94795 0.91312 1.23483 0.96616 1.00131 0.96890 1.22050 0.88061 0.95125 0.92967 1.46002 1.07270 1.10673 1.71671 1.19143 0.92758 0.91011 1.30788 0.90047 1.25490 0.96583 1.00545 1.03357 1.69991 1.08053 1.27839 1.54221 0.85296 0.77735 0.79233 0.78518 1.20748 1.22318 1.20033 1.83218 1.04633 1.67515 0.97144 1.24498 0.97414 1.06615 1.01875 1.20583 1.01776 1.04231 0.88015 0.91513 0.92599 0.92503 0.91792 0.93428 0.90530 0.89007 0.83570 0.76193 0.89791 0.93661 0.87985 0.90181 0.94464 0.95779 0.94477 0.88594 0.90497 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.12 -1.79 5.85 30.59 0.18 -1.61 16 3 C -0.05 -0.79 4.82 29.85 0.14 -0.65 16 4 C -0.13 -2.78 5.04 -21.05 -0.11 -2.89 16 5 C -0.05 -1.26 9.78 21.72 0.21 -1.04 16 6 C -0.30 -9.36 6.45 24.08 0.16 -9.21 16 7 C 0.58 21.92 7.78 86.42 0.67 22.59 16 8 O -0.58 -24.98 16.84 -4.35 -0.07 -25.06 16 9 N -0.71 -25.76 5.33 -467.17 -2.49 -28.25 16 10 C 0.13 4.76 5.52 86.38 0.48 5.23 16 11 C 0.13 4.93 4.10 41.79 0.17 5.10 16 12 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.13 -4.59 8.03 30.93 0.25 -4.34 16 14 C 0.14 6.59 7.39 83.18 0.62 7.20 16 15 N -0.63 -30.92 3.65 -713.86 -2.61 -33.53 16 16 C -0.21 -11.36 10.55 84.04 0.89 -10.48 16 17 H 0.08 4.28 7.50 -2.91 -0.02 4.26 16 18 C -0.07 -3.80 5.50 84.87 0.47 -3.33 16 19 N -0.95 -57.43 11.51 21.65 0.25 -57.18 16 20 Si 0.96 46.07 29.55 68.60 2.03 48.10 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 S 0.21 5.20 22.10 -56.49 -1.25 3.95 16 25 C -0.18 -3.75 6.28 24.68 0.15 -3.59 16 26 C -0.09 -1.13 9.71 71.24 0.69 -0.44 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.94 7.21 -2.38 -0.02 0.92 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 33 H 0.09 1.03 7.47 -2.39 -0.02 1.02 16 34 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 35 H 0.40 14.11 7.49 -92.71 -0.69 13.41 16 36 H 0.08 2.72 8.14 -2.39 -0.02 2.71 16 37 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.08 2.80 8.12 -2.38 -0.02 2.78 16 40 H 0.04 1.96 7.12 -2.38 -0.02 1.94 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.10 0.97 6.37 -2.39 -0.02 0.95 16 Total: -1.00 -70.84 382.34 1.83 -69.01 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.29 Total: 21.38 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.68 Total: 1.58 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -4.85 Total: -118.96 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.07 Total: -25.06 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.25 Total: 3.95 kcal Total: -70.84 1.83 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039004689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.094 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds