Wall clock time and date at job start Tue Mar 31 2020 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47020 * 2 1 4 4 C 1.50708 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.37472 * 122.44306 * 265.28899 * 4 3 2 6 6 C 1.36648 * 113.29275 * 180.18020 * 5 4 3 7 7 C 1.46591 * 125.45759 * 179.84016 * 6 5 4 8 8 O 1.21701 * 119.99910 * 359.72123 * 7 6 5 9 9 N 1.34771 * 119.99644 * 179.72222 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.96693 * 306.67860 * 11 10 9 13 13 C 1.53944 * 113.77224 * 175.00107 * 11 10 9 14 14 C 1.53950 * 86.29079 * 222.09231 * 13 11 10 15 15 N 1.47585 * 113.77049 * 78.49995 * 11 10 9 16 16 C 1.36932 * 134.49495 * 318.94949 * 15 11 10 17 17 H 1.08007 * 119.99670 * 359.97438 * 16 15 11 18 18 C 1.38814 * 120.00453 * 179.97438 * 16 15 11 19 19 N 1.31623 * 119.99581 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00371 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46895 * 60.00085 * 20 18 16 22 22 H 1.48497 * 109.47213 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47229 * 300.00375 * 20 18 16 24 24 S 1.75827 * 109.08561 * 359.57756 * 6 5 4 25 25 C 1.33812 * 122.44980 * 84.99848 * 4 3 2 26 26 C 1.50700 * 124.52658 * 359.97438 * 25 4 3 27 27 H 1.09005 * 109.46836 * 60.00353 * 1 2 3 28 28 H 1.09001 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47117 * 300.00097 * 1 2 3 30 30 H 1.09007 * 109.47013 * 239.99618 * 2 1 3 31 31 H 1.09006 * 109.46880 * 120.00202 * 2 1 3 32 32 H 1.08999 * 109.47255 * 59.99988 * 3 2 1 33 33 H 1.09005 * 109.47028 * 299.99529 * 3 2 1 34 34 H 1.08005 * 123.35804 * 0.02562 * 5 4 3 35 35 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 37 37 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 38 38 H 1.09005 * 113.73705 * 336.43429 * 13 11 10 39 39 H 1.08994 * 113.74699 * 107.63859 * 13 11 10 40 40 H 1.08997 * 113.77044 * 137.90682 * 14 13 11 41 41 H 1.08997 * 113.76603 * 269.19409 * 14 13 11 42 42 H 0.97001 * 120.00214 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.46956 * 179.97438 * 26 25 4 44 44 H 1.09001 * 109.46669 * 299.99933 * 26 25 4 45 45 H 1.09005 * 109.47039 * 59.99788 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2851 1.5375 1.1553 6 6 5.6341 1.5236 0.9378 7 6 6.6640 1.6134 1.9772 8 8 6.3414 1.7149 3.1463 9 7 7.9679 1.5835 1.6380 10 6 8.9972 1.6727 2.6767 11 6 10.3820 1.6155 2.0288 12 1 10.5115 0.7511 1.3776 13 6 11.5404 1.8238 3.0210 14 6 12.1778 2.7109 1.9362 15 7 10.8070 2.8909 1.4198 16 6 10.1809 3.8544 0.6750 17 1 9.1363 3.7475 0.4221 18 6 10.8887 4.9684 0.2449 19 7 12.1616 5.0987 0.5535 20 14 10.0348 6.2823 -0.7717 21 1 8.9052 6.8530 0.0052 22 1 11.0023 7.3596 -1.1015 23 1 9.5179 5.6793 -2.0264 24 16 5.9368 1.3731 -0.7876 25 6 4.2646 1.3441 -1.1258 26 6 3.6746 1.2228 -2.5072 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9562 -0.8901 34 1 3.8428 1.6179 2.1374 35 1 8.2251 1.5022 0.7063 36 1 8.8872 2.6128 3.2174 37 1 8.8864 0.8394 3.3706 38 1 11.2547 2.3683 3.9211 39 1 12.1040 0.9156 3.2347 40 1 12.6250 3.6261 2.3239 41 1 12.8371 2.1696 1.2576 42 1 12.6562 5.8773 0.2533 43 1 4.4780 1.1593 -3.2411 44 1 3.0599 0.3244 -2.5621 45 1 3.0592 2.0976 -2.7175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039004691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:23 Heat of formation + Delta-G solvation = 26.807101 kcal Electronic energy + Delta-G solvation = -24565.288943 eV Core-core repulsion = 21096.402575 eV Total energy + Delta-G solvation = -3468.886368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62141 -38.68579 -37.80692 -34.40611 -34.07407 -32.23580 -32.06617 -29.02339 -28.04255 -27.71391 -25.67487 -23.58886 -23.36848 -22.31282 -21.61874 -20.35422 -19.23476 -18.66209 -17.85276 -16.73287 -16.34720 -15.46990 -15.34378 -14.99209 -14.81895 -14.71529 -14.27873 -13.99924 -13.67690 -13.59489 -13.31871 -13.19768 -12.98319 -12.87900 -12.32021 -12.15014 -11.95947 -11.85192 -11.51853 -11.42658 -11.32981 -11.12013 -11.01398 -10.91451 -10.73204 -10.71488 -10.56451 -10.06991 -9.78790 -9.74533 -9.40004 -8.80036 -8.77124 -8.56073 -8.38543 -6.90180 -5.76627 -3.09261 0.54146 1.47063 1.88373 2.33690 3.38268 3.40315 3.43843 3.44140 3.51162 4.43096 4.59421 4.66386 4.76911 4.88436 4.97642 5.04457 5.15223 5.23086 5.29659 5.36778 5.39321 5.45640 5.55988 5.59750 5.60694 5.67218 5.68887 5.76240 5.84676 5.90589 5.94753 6.05973 6.07507 6.26918 6.32216 6.39082 6.40824 6.61193 6.68414 6.83442 7.24271 7.40269 7.58976 7.80215 7.98294 8.45251 9.04173 9.70866 10.58829 11.40012 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.003360 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.195051 B = 8330.370546 C = 9477.397723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.057 4.057 4 C -0.122 4.122 5 C -0.053 4.053 6 C -0.259 4.259 7 C 0.586 3.414 8 O -0.541 6.541 9 N -0.709 5.709 10 C 0.124 3.876 11 C 0.125 3.875 12 H 0.050 0.950 13 C -0.155 4.155 14 C 0.159 3.841 15 N -0.602 5.602 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.905 3.095 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.284 1.284 24 S 0.208 5.792 25 C -0.203 4.203 26 C -0.081 4.081 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.400 0.600 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.027 0.973 42 H 0.254 0.746 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.307 -11.481 -3.556 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.097 4.097 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.379 4.379 7 C 0.371 3.629 8 O -0.420 6.420 9 N -0.358 5.358 10 C 0.000 4.000 11 C 0.017 3.983 12 H 0.067 0.933 13 C -0.194 4.194 14 C 0.034 3.966 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.735 3.265 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 S 0.478 5.522 25 C -0.322 4.322 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.167 0.833 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.143 -11.160 -3.806 19.991 hybrid contribution -1.516 0.855 -0.327 1.771 sum -17.659 -10.305 -4.133 20.860 Atomic orbital electron populations 1.21788 0.95743 1.01615 1.01828 1.21496 0.95468 0.96304 1.02410 1.20303 0.89261 0.97259 1.02833 1.18579 0.97257 1.06261 0.91352 1.20548 0.90916 0.97460 0.99661 1.24618 0.98114 1.17979 0.97199 1.16944 0.81869 0.76859 0.87193 1.90789 1.81843 1.50935 1.18468 1.45858 1.05147 1.73367 1.11464 1.21823 0.86531 1.01812 0.89879 1.22519 0.91455 0.90961 0.93370 0.93289 1.23771 0.97418 0.99711 0.98496 1.22198 0.88004 0.96440 0.89971 1.46074 1.07161 1.17353 1.62292 1.18885 0.93507 0.97043 1.25334 0.90520 1.24742 0.95891 0.98458 1.01128 1.69806 1.07363 1.29706 1.49803 0.86302 0.78395 0.81578 0.80177 1.21080 1.21521 1.21112 1.83259 1.02771 1.67192 0.99003 1.24030 0.98648 1.09278 1.00266 1.20348 1.00782 1.02903 0.89944 0.92771 0.92761 0.92651 0.91973 0.91770 0.90941 0.91051 0.83256 0.76585 0.90667 0.91884 0.90451 0.92742 0.90780 0.95543 0.93627 0.91348 0.90475 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 3 C -0.06 -0.50 5.11 -27.88 -0.14 -0.64 16 4 C -0.12 -1.40 5.04 -106.45 -0.54 -1.94 16 5 C -0.05 -0.73 9.78 -40.44 -0.40 -1.12 16 6 C -0.26 -4.02 6.45 -36.79 -0.24 -4.25 16 7 C 0.59 10.77 7.78 -12.89 -0.10 10.67 16 8 O -0.54 -11.39 16.84 5.19 0.09 -11.30 16 9 N -0.71 -12.79 5.52 -61.64 -0.34 -13.13 16 10 C 0.12 2.30 5.54 -4.04 -0.02 2.28 16 11 C 0.12 2.42 4.33 -66.86 -0.29 2.13 16 12 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.16 -2.84 7.86 -25.80 -0.20 -3.04 16 14 C 0.16 3.65 7.52 -2.97 -0.02 3.63 16 15 N -0.60 -14.79 3.57 -170.71 -0.61 -15.40 16 16 C -0.22 -5.97 10.51 -15.06 -0.16 -6.12 16 17 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -27.04 11.38 55.49 0.63 -26.41 16 20 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 S 0.21 2.71 22.08 -107.50 -2.37 0.34 16 25 C -0.20 -2.27 6.28 -35.86 -0.23 -2.50 16 26 C -0.08 -0.66 9.44 36.01 0.34 -0.32 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.47 7.41 -51.92 -0.38 0.09 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.07 0.56 7.45 -51.93 -0.39 0.17 16 34 H 0.15 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.40 6.92 7.59 -40.82 -0.31 6.61 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.89 7.15 -51.93 -0.37 1.52 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 44 H 0.08 0.52 7.40 -51.93 -0.38 0.14 16 45 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -32.00 383.92 -11.00 -43.00 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.28 Total: 3.13 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.88 Total: -3.17 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.32 Total: -54.93 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.37 Total: 0.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.00 -11.00 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039004691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.809 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds