Wall clock time and date at job start Tue Mar 31 2020 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47020 * 2 1 4 4 C 1.50708 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.37472 * 122.44306 * 265.28899 * 4 3 2 6 6 C 1.36648 * 113.29275 * 180.18020 * 5 4 3 7 7 C 1.46591 * 125.45759 * 179.84016 * 6 5 4 8 8 O 1.21701 * 119.99910 * 359.72123 * 7 6 5 9 9 N 1.34771 * 119.99644 * 179.72222 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.96693 * 306.67860 * 11 10 9 13 13 C 1.53944 * 113.77224 * 175.00107 * 11 10 9 14 14 C 1.53950 * 86.29079 * 222.09231 * 13 11 10 15 15 N 1.47585 * 113.77049 * 78.49995 * 11 10 9 16 16 C 1.36932 * 134.49495 * 318.94949 * 15 11 10 17 17 H 1.08007 * 119.99670 * 359.97438 * 16 15 11 18 18 C 1.38814 * 120.00453 * 179.97438 * 16 15 11 19 19 N 1.31623 * 119.99581 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00371 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46895 * 60.00085 * 20 18 16 22 22 H 1.48497 * 109.47213 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47229 * 300.00375 * 20 18 16 24 24 S 1.75827 * 109.08561 * 359.57756 * 6 5 4 25 25 C 1.33812 * 122.44980 * 84.99848 * 4 3 2 26 26 C 1.50700 * 124.52658 * 359.97438 * 25 4 3 27 27 H 1.09005 * 109.46836 * 60.00353 * 1 2 3 28 28 H 1.09001 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47117 * 300.00097 * 1 2 3 30 30 H 1.09007 * 109.47013 * 239.99618 * 2 1 3 31 31 H 1.09006 * 109.46880 * 120.00202 * 2 1 3 32 32 H 1.08999 * 109.47255 * 59.99988 * 3 2 1 33 33 H 1.09005 * 109.47028 * 299.99529 * 3 2 1 34 34 H 1.08005 * 123.35804 * 0.02562 * 5 4 3 35 35 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 37 37 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 38 38 H 1.09005 * 113.73705 * 336.43429 * 13 11 10 39 39 H 1.08994 * 113.74699 * 107.63859 * 13 11 10 40 40 H 1.08997 * 113.77044 * 137.90682 * 14 13 11 41 41 H 1.08997 * 113.76603 * 269.19409 * 14 13 11 42 42 H 0.97001 * 120.00214 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.46956 * 179.97438 * 26 25 4 44 44 H 1.09001 * 109.46669 * 299.99933 * 26 25 4 45 45 H 1.09005 * 109.47039 * 59.99788 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2851 1.5375 1.1553 6 6 5.6341 1.5236 0.9378 7 6 6.6640 1.6134 1.9772 8 8 6.3414 1.7149 3.1463 9 7 7.9679 1.5835 1.6380 10 6 8.9972 1.6727 2.6767 11 6 10.3820 1.6155 2.0288 12 1 10.5115 0.7511 1.3776 13 6 11.5404 1.8238 3.0210 14 6 12.1778 2.7109 1.9362 15 7 10.8070 2.8909 1.4198 16 6 10.1809 3.8544 0.6750 17 1 9.1363 3.7475 0.4221 18 6 10.8887 4.9684 0.2449 19 7 12.1616 5.0987 0.5535 20 14 10.0348 6.2823 -0.7717 21 1 8.9052 6.8530 0.0052 22 1 11.0023 7.3596 -1.1015 23 1 9.5179 5.6793 -2.0264 24 16 5.9368 1.3731 -0.7876 25 6 4.2646 1.3441 -1.1258 26 6 3.6746 1.2228 -2.5072 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9562 -0.8901 34 1 3.8428 1.6179 2.1374 35 1 8.2251 1.5022 0.7063 36 1 8.8872 2.6128 3.2174 37 1 8.8864 0.8394 3.3706 38 1 11.2547 2.3683 3.9211 39 1 12.1040 0.9156 3.2347 40 1 12.6250 3.6261 2.3239 41 1 12.8371 2.1696 1.2576 42 1 12.6562 5.8773 0.2533 43 1 4.4780 1.1593 -3.2411 44 1 3.0599 0.3244 -2.5621 45 1 3.0592 2.0976 -2.7175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039004691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:23 Heat of formation + Delta-G solvation = 8.289558 kcal Electronic energy + Delta-G solvation = -24566.091924 eV Core-core repulsion = 21096.402575 eV Total energy + Delta-G solvation = -3469.689349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97414 -39.88394 -39.32647 -35.62733 -35.09583 -34.22312 -32.98904 -30.19851 -29.79902 -28.95376 -26.62483 -25.30257 -24.70717 -23.53722 -22.60566 -21.62637 -20.86767 -19.78821 -19.08901 -18.40823 -17.57714 -17.13105 -16.80126 -16.34746 -16.00422 -15.70444 -15.67279 -15.22449 -15.10076 -14.79085 -14.57281 -14.34428 -13.88194 -13.71186 -13.61886 -13.32170 -12.97260 -12.92939 -12.86930 -12.71719 -12.71174 -12.61403 -12.37052 -12.31610 -11.98060 -11.87435 -11.68082 -11.55943 -11.44814 -11.44427 -11.05423 -10.83126 -10.21146 -9.64259 -9.37831 -8.89621 -7.87701 -5.19476 -0.53076 0.43972 0.88336 1.30426 1.42090 1.44846 1.50216 2.04745 2.15800 2.46637 3.30973 3.37154 3.70722 3.80904 3.97189 4.02553 4.09215 4.10834 4.27376 4.30711 4.31838 4.53588 4.58230 4.64222 4.68135 4.70695 4.74646 4.84926 4.91370 4.96085 5.03259 5.05395 5.06398 5.08468 5.18402 5.22600 5.31003 5.33562 5.43440 5.50020 5.55202 5.60340 5.73549 5.97841 6.38221 6.94948 7.03662 7.64392 8.59035 9.28833 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.003360 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.195051 B = 8330.370546 C = 9477.397723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.054 4.054 4 C -0.131 4.131 5 C -0.045 4.045 6 C -0.300 4.300 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.709 5.709 10 C 0.132 3.868 11 C 0.130 3.870 12 H 0.071 0.929 13 C -0.129 4.129 14 C 0.151 3.849 15 N -0.630 5.630 16 C -0.215 4.215 17 H 0.080 0.920 18 C -0.067 4.067 19 N -0.953 5.953 20 Si 0.962 3.038 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.272 1.272 24 S 0.207 5.793 25 C -0.184 4.184 26 C -0.085 4.085 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.403 0.597 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.024 0.976 42 H 0.246 0.754 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.536 -12.898 -5.006 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.080 4.080 6 C -0.420 4.420 7 C 0.372 3.628 8 O -0.460 6.460 9 N -0.358 5.358 10 C 0.007 3.993 11 C 0.024 3.976 12 H 0.089 0.911 13 C -0.167 4.167 14 C 0.025 3.975 15 N -0.357 5.357 16 C -0.344 4.344 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.602 5.602 20 Si 0.791 3.209 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.197 1.197 24 S 0.477 5.523 25 C -0.304 4.304 26 C -0.143 4.143 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.164 0.836 35 H 0.238 0.762 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.387 -12.616 -5.264 22.912 hybrid contribution -0.904 1.217 0.106 1.520 sum -19.291 -11.399 -5.158 22.993 Atomic orbital electron populations 1.21768 0.94588 1.02100 1.02280 1.21466 0.96418 0.95444 1.02056 1.20369 0.87131 0.98147 1.03697 1.18788 0.98728 1.06278 0.90466 1.20766 0.90659 0.96014 1.00537 1.24395 0.97931 1.21605 0.98022 1.17320 0.82259 0.75806 0.87410 1.90751 1.82381 1.52800 1.20117 1.45837 1.05165 1.73338 1.11461 1.21648 0.86373 1.01147 0.90104 1.22695 0.92187 0.89335 0.93352 0.91120 1.23563 0.96130 1.00196 0.96858 1.22176 0.87604 0.96048 0.91635 1.46425 1.08218 1.18943 1.62098 1.19202 0.93730 0.97487 1.23974 0.90269 1.25479 0.96646 1.00727 1.03162 1.69984 1.08610 1.30057 1.51572 0.85389 0.77117 0.79155 0.79232 1.21224 1.22094 1.19735 1.83201 1.04599 1.67370 0.97125 1.24501 0.97409 1.06651 1.01814 1.20546 1.01404 1.04546 0.87785 0.91800 0.92302 0.92741 0.91476 0.93027 0.90920 0.89381 0.83639 0.76186 0.93661 0.89694 0.90314 0.88537 0.94197 0.95800 0.94486 0.90623 0.88445 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.99 0.71 -0.82 16 2 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 3 C -0.05 -0.81 5.11 29.85 0.15 -0.66 16 4 C -0.13 -2.76 5.04 -21.05 -0.11 -2.87 16 5 C -0.05 -1.24 9.78 21.72 0.21 -1.02 16 6 C -0.30 -9.27 6.45 24.08 0.16 -9.12 16 7 C 0.58 21.75 7.78 86.42 0.67 22.42 16 8 O -0.58 -24.91 16.84 -4.35 -0.07 -24.99 16 9 N -0.71 -25.49 5.52 -467.16 -2.58 -28.07 16 10 C 0.13 4.83 5.54 86.38 0.48 5.31 16 11 C 0.13 4.90 4.33 45.09 0.20 5.09 16 12 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 13 C -0.13 -4.49 7.86 31.25 0.25 -4.25 16 14 C 0.15 6.96 7.52 86.48 0.65 7.61 16 15 N -0.63 -31.02 3.57 -694.01 -2.48 -33.50 16 16 C -0.22 -11.78 10.51 84.03 0.88 -10.89 16 17 H 0.08 4.18 7.80 -2.91 -0.02 4.15 16 18 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 19 N -0.95 -57.61 11.38 21.65 0.25 -57.36 16 20 Si 0.96 46.21 29.55 68.60 2.03 48.24 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 24 S 0.21 5.15 22.08 -56.49 -1.25 3.90 16 25 C -0.18 -3.67 6.28 24.68 0.15 -3.52 16 26 C -0.08 -1.05 9.44 71.24 0.67 -0.38 16 27 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.81 7.41 -2.38 -0.02 0.80 16 31 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.07 1.10 8.11 -2.39 -0.02 1.08 16 33 H 0.09 1.05 7.45 -2.38 -0.02 1.03 16 34 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.40 13.82 7.59 -92.71 -0.70 13.11 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.08 2.74 8.10 -2.38 -0.02 2.72 16 39 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.04 2.10 7.15 -2.39 -0.02 2.08 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 44 H 0.10 0.90 7.40 -2.39 -0.02 0.88 16 45 H 0.09 0.95 7.92 -2.38 -0.02 0.94 16 Total: -1.00 -70.99 383.92 1.90 -69.10 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.28 Total: 20.49 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.73 Total: 2.19 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -4.81 Total: -118.92 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.07 Total: -24.99 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.25 Total: 3.90 kcal Total: -70.99 1.90 -69.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039004691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.385 kcal (2) G-P(sol) polarization free energy of solvation -70.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds