Wall clock time and date at job start Tue Mar 31 2020 13:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 C 1.33811 * 124.51992 * 60.00235 * 5 2 1 7 7 C 1.37473 * 115.10059 * 180.02562 * 6 5 2 8 8 C 1.36641 * 113.29683 * 359.97438 * 7 6 5 9 9 C 1.46587 * 125.45984 * 180.02562 * 8 7 6 10 10 O 1.21705 * 119.99461 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00257 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99950 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46731 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.96464 * 53.32333 * 13 12 11 15 15 C 1.53952 * 113.76441 * 184.99519 * 13 12 11 16 16 C 1.53953 * 86.28336 * 137.90876 * 15 13 12 17 17 N 1.47571 * 86.12046 * 336.39293 * 16 15 13 18 18 C 1.36936 * 134.49361 * 204.63969 * 17 16 15 19 19 H 1.08004 * 119.99695 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00306 * 0.02562 * 18 17 16 21 21 N 1.31622 * 119.99614 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00196 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47013 * 60.00235 * 22 20 18 24 24 H 1.48500 * 109.46810 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47144 * 299.99889 * 22 20 18 26 26 S 1.70616 * 124.52248 * 239.69966 * 5 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 1.08008 * 122.44899 * 0.02562 * 6 5 2 37 37 H 1.08007 * 123.34988 * 180.02562 * 7 6 5 38 38 H 0.96996 * 119.99803 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.47100 * 299.99851 * 12 11 9 40 40 H 1.08993 * 109.47150 * 60.00232 * 12 11 9 41 41 H 1.09000 * 113.74346 * 252.25284 * 15 13 12 42 42 H 1.09002 * 113.74132 * 23.45962 * 15 13 12 43 43 H 1.08997 * 113.76454 * 90.69778 * 16 15 13 44 44 H 1.09002 * 113.76837 * 221.97753 * 16 15 13 45 45 H 0.96990 * 119.99934 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 1.7654 -0.3329 -2.4862 7 6 2.3231 -1.1226 -3.4636 8 6 3.0577 -2.1614 -2.9653 9 6 3.7663 -3.1634 -3.7669 10 8 3.7279 -3.1085 -4.9821 11 7 4.4610 -4.1449 -3.1583 12 6 5.1696 -5.1460 -3.9595 13 6 5.8715 -6.1388 -3.0307 14 1 5.1992 -6.5826 -2.2965 15 6 6.7487 -7.1659 -3.7695 16 6 7.7833 -6.9357 -2.6529 17 7 7.1305 -5.6271 -2.4553 18 6 7.5317 -4.4220 -1.9436 19 1 6.8407 -3.5926 -1.9101 20 6 8.8268 -4.2660 -1.4690 21 7 9.6690 -5.2766 -1.5103 22 14 9.3743 -2.6218 -0.7716 23 1 8.5211 -2.2686 0.3913 24 1 10.7906 -2.7162 -0.3353 25 1 9.2463 -1.5739 -1.8160 26 16 3.0233 -2.0992 -1.2084 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 1.1564 0.5292 -2.7151 37 1 2.1941 -0.9395 -4.5202 38 1 4.4918 -4.1885 -2.1898 39 1 4.4565 -5.6791 -4.5884 40 1 5.9093 -4.6508 -4.5884 41 1 6.3312 -8.1726 -3.7802 42 1 7.0805 -6.8329 -4.7529 43 1 7.6740 -7.6135 -1.8063 44 1 8.8100 -6.8667 -3.0126 45 1 10.5740 -5.1676 -1.1790 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039047832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:10 Heat of formation + Delta-G solvation = 33.416657 kcal Electronic energy + Delta-G solvation = -24899.414922 eV Core-core repulsion = 21430.815165 eV Total energy + Delta-G solvation = -3468.599757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.53610 -38.75373 -37.87111 -35.93470 -34.07423 -32.18695 -29.62399 -27.96935 -27.73054 -27.54916 -27.44219 -24.82564 -23.36686 -22.34852 -20.91371 -20.59876 -19.40524 -18.70699 -17.60804 -16.61208 -16.12994 -15.56573 -15.31808 -15.16226 -14.75960 -14.48758 -14.25432 -14.16276 -13.80400 -13.38302 -13.20566 -13.01740 -12.86489 -12.71699 -12.28821 -12.09425 -11.97655 -11.84466 -11.53412 -11.42208 -11.25121 -11.23029 -11.11701 -11.01504 -10.73483 -10.66988 -10.56363 -10.06275 -9.78166 -9.73966 -9.39632 -8.80568 -8.78808 -8.59037 -8.48105 -6.89853 -5.76454 -3.08992 0.56051 1.47822 1.92392 2.42918 3.38050 3.41827 3.43680 3.44336 3.53485 4.24913 4.43194 4.54576 4.64807 4.96448 5.00343 5.15942 5.27530 5.31762 5.32516 5.39468 5.45024 5.46768 5.56665 5.59836 5.60967 5.66540 5.69354 5.81914 5.90616 5.91307 6.00052 6.04356 6.07824 6.18597 6.31942 6.35421 6.40070 6.61477 6.68970 6.84161 7.24472 7.40529 7.59046 7.81244 7.98416 8.46461 9.04398 9.71077 10.59089 11.40188 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003940 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.483152 B = 7104.813795 C = 8437.098377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 C -0.137 4.137 4 C -0.156 4.156 5 C -0.188 4.188 6 C -0.153 4.153 7 C -0.059 4.059 8 C -0.266 4.266 9 C 0.586 3.414 10 O -0.541 6.541 11 N -0.709 5.709 12 C 0.124 3.876 13 C 0.125 3.875 14 H 0.050 0.950 15 C -0.155 4.155 16 C 0.159 3.841 17 N -0.602 5.602 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.284 1.284 26 S 0.217 5.783 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.400 0.600 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.027 0.973 44 H 0.074 0.926 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.060 7.473 3.234 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 C -0.195 4.195 4 C -0.214 4.214 5 C -0.308 4.308 6 C -0.184 4.184 7 C -0.092 4.092 8 C -0.386 4.386 9 C 0.371 3.629 10 O -0.421 6.421 11 N -0.359 5.359 12 C 0.000 4.000 13 C 0.017 3.983 14 H 0.067 0.933 15 C -0.194 4.194 16 C 0.034 3.966 17 N -0.328 5.328 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.566 5.566 22 Si 0.735 3.265 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.211 1.211 26 S 0.487 5.513 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.234 0.766 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.146 6.786 3.662 18.800 hybrid contribution -0.246 1.852 -0.151 1.875 sum -17.392 8.638 3.510 19.734 Atomic orbital electron populations 1.21883 0.93006 1.02339 1.02106 1.19141 0.95858 0.94926 0.90161 1.21897 1.01680 0.93855 1.02092 1.22035 1.01956 1.00637 0.96792 1.24302 1.04966 1.02404 0.99159 1.19818 1.04835 1.02788 0.90937 1.20672 0.94980 0.92343 1.01199 1.24770 1.11314 1.04930 0.97595 1.16963 0.78602 0.80350 0.86964 1.90788 1.63371 1.74856 1.13104 1.45859 1.50762 1.28673 1.10559 1.21818 0.94870 0.89163 0.94193 1.22521 0.90338 0.92230 0.93227 0.93291 1.23773 0.98901 0.96776 0.99943 1.22192 0.97074 0.85356 0.91952 1.46061 1.06716 1.07572 1.72479 1.18880 0.95615 0.86734 1.33521 0.90537 1.24732 0.96368 0.97438 1.01621 1.69802 1.05541 1.29654 1.51635 0.86318 0.77737 0.83478 0.79011 1.21137 1.21506 1.21095 1.83236 1.44319 1.22852 1.00922 0.92212 0.91991 0.92284 0.91976 0.92134 0.92190 0.91867 0.91694 0.91312 0.84280 0.83283 0.76601 0.91903 0.90688 0.92767 0.90450 0.95569 0.90800 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.33 37.16 0.31 -0.68 16 2 C 0.00 0.01 0.90 -155.66 -0.14 -0.13 16 3 C -0.14 -1.11 8.33 37.15 0.31 -0.80 16 4 C -0.16 -1.34 7.52 37.16 0.28 -1.06 16 5 C -0.19 -2.10 4.97 -35.86 -0.18 -2.28 16 6 C -0.15 -1.73 9.18 -41.41 -0.38 -2.11 16 7 C -0.06 -0.80 10.01 -40.44 -0.40 -1.21 16 8 C -0.27 -4.11 6.45 -36.79 -0.24 -4.35 16 9 C 0.59 10.77 7.78 -12.89 -0.10 10.67 16 10 O -0.54 -11.43 16.84 5.18 0.09 -11.35 16 11 N -0.71 -12.77 5.52 -61.65 -0.34 -13.11 16 12 C 0.12 2.30 5.54 -4.04 -0.02 2.28 16 13 C 0.12 2.41 4.33 -66.86 -0.29 2.12 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.15 -2.83 7.86 -25.80 -0.20 -3.03 16 16 C 0.16 3.65 7.51 -2.98 -0.02 3.63 16 17 N -0.60 -14.71 3.57 -170.73 -0.61 -15.32 16 18 C -0.22 -5.94 10.51 -15.06 -0.16 -6.10 16 19 H 0.08 2.00 7.80 -52.48 -0.41 1.59 16 20 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 21 N -0.92 -26.92 11.39 55.49 0.63 -26.29 16 22 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 S 0.22 2.80 20.43 -107.50 -2.20 0.61 16 27 H 0.06 0.42 7.86 -51.93 -0.41 0.01 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.46 7.86 -51.93 -0.41 0.05 16 33 H 0.06 0.54 7.91 -51.93 -0.41 0.13 16 34 H 0.06 0.61 7.89 -51.93 -0.41 0.20 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.14 1.25 7.90 -52.48 -0.41 0.84 16 37 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 38 H 0.40 6.90 7.59 -40.82 -0.31 6.59 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -31.79 381.20 -10.39 -42.18 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.35 Total: 3.71 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.33 Total: -3.27 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.32 Total: -54.72 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.20 Total: 0.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.79 -10.39 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039047832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.595 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds